Pimephales promelas (fathead minnow): 120472008
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Entry
120472008 CDS
T08155
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120472008 (cdkal1)
Enzymes [BR:
pprm01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
120472008 (cdkal1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
120472008 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
120472008
NCBI-ProteinID:
XP_039517924
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MPSACDSLVDDIEDMVTSNDPTPHERQFARGSIVPRARKHKQQPVGEELLADSVIPGTQK
IWVRTWGCSHNSSDGEYMAGQLAASGYKITENPSDADLWLLNSCTVKNPAEDHFRNSIKK
AQEQNKKVVLAGCVPQAQPRMDYLKDLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEK
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPSLLWELVKEIPEGAMLRLGMTNPPYILEHLEEM
AKILNNPRVYAFLHVPVQSASDSVLMDMKREYCCADFRQVMDFLKEKVPGITIATDIICG
FPGETDEDFEQTMELVRQYRFPSLFINQFYPRPGTPAAKMEQIPAHVKKQRTKDLSALFH
SYNPYDHKIGEKQHVLVTEESFDSQYYVAHNKFYEQVLVPKKPEFKGKMIEVNIYEAGKH
YMKGRPVEDAQVFTPSIAQPLQKGQVSGLPQVSLLDHVLSD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgcttgtgactctcttgttgatgatatcgaggatatggtaacctccaatgac
cctacaccccatgagcgccagtttgccaggggaagcattgtgcctcgtgcacgcaagcac
aagcaacagcctgtaggagaagagcttctggcagacagtgtgattcctggcacacagaag
atctgggtgaggacgtggggctgctctcacaacagctctgatggcgaatacatggcgggg
cagttggctgccagcggttataagataacagagaatccatctgatgctgatctgtggtta
ctgaacagttgcacagtcaaaaaccctgcagaagatcacttcaggaactccataaagaaa
gctcaggagcagaataagaaggtggttttagcgggatgtgtgccacaggcccagcccagg
atggactacctgaaagacctgagcatcatcggggttcagcagattgatagagtggtggag
gttgtggacgaggctgtcaaaggtcactctgtgcgtcttctgggtcagaagaaggagaaa
gggaaacgactgggaggagcgcggctggatttgcccaagatcagaaagaacccgctgatt
gaaataatttccatcaatacaggctgtctgaacgcttgcacgtactgcaaaaccaaacac
gctagaggggatctggccagttaccccatagaggagctggtagagagagccagacagtct
ttccaggagggtgtctgtgagatctggctgaccagtgaggacacgggtgcgtacggccgt
gacatcggcactgacctgccgtctctgctctgggaactggtgaaggagatcccggaggga
gcgatgttgcgcctgggcatgaccaacccaccctatattttggaacatctggaggaaatg
gccaaaatccttaacaacccgcgagtctacgccttcctccatgtgcctgtccaatcagca
tctgacagcgtcctgatggacatgaagagagagtactgctgtgccgactttagacaggtc
atggacttccttaaggagaaggttccaggcatcactattgccactgacatcatctgcggc
ttcccaggtgagacggatgaggactttgaacagacaatggaactcgtgaggcagtaccgc
tttcccagcctctttattaaccagttctacccacgacctggaactcctgcagccaagatg
gaacagattccagcacacgtgaaaaaacaaagaaccaaagatctctccgctctcttccac
tcatacaacccttatgaccacaagattggagaaaagcagcatgtcctggtcactgaagag
tcctttgactcccagtactacgtggcccacaacaagttctatgagcaggtgctggtgccg
aagaagcctgagttcaaagggaagatgatcgaagtgaatatatatgaggctgggaagcac
tacatgaagggacggccagtggaggatgcacaggtcttcactccctctattgctcagcct
cttcagaagggccaggtgtctggactccctcaggtcagtctacttgaccatgtcttatcg
gattag
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