Pimephales promelas (fathead minnow): 120478884
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Entry
120478884 CDS
T08155
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03440
Homologous recombination
pprm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120478884 (brip1)
03460 Fanconi anemia pathway
120478884 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120478884 (brip1)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120478884 (brip1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120478884 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
120478884 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
120478884
NCBI-ProteinID:
XP_039527000
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MAATPVDYTIGGVKINFPCKAYPSQLAMMNSIIRGLNQGKHCLLESPTGSGKSLALLCSA
LAWQQAQFDKVQPNAASSSADCKKPEVVTPCQCVCHSQKAHTTFNRTASKPNLVDLAGEG
TAAEATTPLSKGVKSDQPKKSTLSSRLSEKLQASLSNGEQDDDFKMDRKRIRTPGTEQKN
SKRRCLERGVIYIDDDEEEDDLGRPVPGTQSWTMELNSGAKAASCQSQPQCCSPVSCSLC
PCANRKAGQKLLEKSKDNEKDKEGSERKKIPKIFFGTRTHKQITQIARELKRTLYSTVPM
TILSSRDHTCVHPEVVPHANRNERCRELLEAQNGLSCRYYHNVHKMRDQSSLQWVHGLNQ
AWDIEDLVRLGGKLRSCAYYAARDLMQEACIVFCPYNYLLDPLIRESMEINLKEQIVVLD
EAHNIEDCARESASFTLNQAQLLLARDEIDGMVTLNIRRDQHKPLLAFCCSLANWVQESC
DGLEEREFESSCKVWSGTEVLGIFHGLGITADIFSLLQKNLAAVLEKEERIGIVNGREDT
VQVPTISSNTQSMLKSLFMVLEFLFRQNCRFADDYRVALQQSYMWTTQQDLPDAQGFFAR
PQRRRQSTRTKTLVHTLSFWCLNPAVAFSDLSDSVRTIVLTSGTLSPMGSFSSELGIKFS
IQLEANHVINKSQVWVGTVGAGPQGRKLCATFQHAETFAFQDEVGALLLKVCHTVSRGVL
CFLPSYKMLDKLRDRWMNTGLWEKLEERKTVITEPRGGGKGDFDALLQTYYEAIRGTASN
CENRDGALLVAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDKHAKSR
GLLPGGRWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFKTNPNKYITGLSKWVRQLV
RHHDTFTGAMLSLESFSQGQRGAVETFEETQSQAVTQYPSPSNVTSPPPEIITPNKQFDP
QPAPLNLHTEMQAANSESRSSESGDQKCIQHPSEPTILPSRKRNVHRTVWPTDHLFTSSP
VSSQFKTSIFQIEQGANSVNNKQLQQGLIPALSVTPKNQINGAPDLNDSSLEPQLEQLFV
IPSSTLKLNTSGMDLDDTEEGEQSIFYSPELFEGDGEEKEESTEVERSPAEVSHPASSTA
SILLDDLFGLEQGKRTLSKDIVNSTVPDNTLLKGCVEQKESYCSADFENVSASQNDANSS
RSRRLSRSRQKRPSTSAASGKLTNYFKIVPPTSQPCIITVDD
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgactccagtagactacaccataggaggggtgaaaataaacttcccctgcaaa
gcttatccctctcagctggccatgatgaattcaatcattcgtggacttaaccaaggaaag
cactgtctattggagagtcctactggcagtgggaagagtcttgctttgctttgttcagcc
cttgcatggcagcaagcacagtttgataaggtacagccgaatgcagcatccagttcggcc
gactgtaagaaaccagaagtggttactccatgtcaatgtgtgtgccacagccaaaaagca
cacacaaccttcaacagaacagcatctaaaccaaatctggtggatcttgctggtgaaggt
actgctgctgaagctacaacccctctgtcaaaaggagtcaaaagtgaccagcctaaaaag
tcgactttgtcttcccgcctctctgagaaacttcaagcctctctctccaatggagaacaa
gatgatgattttaagatggacaggaagcgcattcgtacaccaggcacagagcaaaaaaac
agcaagcgaagatgtctcgaacgaggagtgatttacattgatgatgatgaagaggaggat
gatctgggcagacccgtgcctgggactcagagttggaccatggaattgaacagtggtgcc
aaagctgccagctgccagtcgcagccacagtgttgttctcccgtgtcttgttctctctgt
ccttgcgccaaccgcaaagcaggacagaaactgcttgaaaagtccaaggacaatgagaaa
gacaaagagggaagcgagaggaaaaaaatcccaaagatcttcttcggcactcgtactcat
aagcagatcacacagatcgcaagggagctgaaacggacgctttactccacggtgcccatg
acaatactgtccagccgagaccacacctgtgtccaccccgaagtggtacctcatgccaac
cgcaacgagcgctgcagggagctgctggaggcccagaacggtctgtcatgccggtactac
cacaatgtgcataaaatgcgtgatcagagctctttacagtgggttcatgggctaaaccag
gcctgggacattgaggatctggtgcgtcttggtggcaagctgcggtcctgtgcttactac
gcagctcgggatctcatgcaagaggcctgcattgtgttctgtccttacaactacctgctg
gacccccttattcgtgagagcatggaaatcaatctgaaggagcagattgtggtgctggac
gaggctcataacatagaggattgtgcccgtgagagtgccagtttcaccctgaatcaagct
cagctgttgctggcacgtgatgagatcgacggaatggtgacgcttaacatacggcgtgat
caacacaagccactgcttgcattctgctgcagccttgccaactgggtgcaggaaagctgc
gatggcttggaggagcgtgaatttgagtcttcatgtaaggtctggtcaggcacggaggtt
cttggcatcttccatggccttggcatcacagcagacatcttctctttgctacagaaaaac
ctggcagcggtgctagagaaggaggagcgaatagggatagtgaacgggagagaagacacg
gtgcaggttcccaccatcagctccaatactcagtcaatgctcaaaagcctctttatggtg
ctggaatttcttttcaggcaaaattgcaggtttgcagatgattaccgagtggctctccag
cagagctacatgtggacaacccagcaggacctgcccgatgctcagggcttttttgcacga
ccccagcgtcgccgacagagcacccgcaccaaaactctggtgcacaccctgagcttttgg
tgcctcaatcctgctgtggcattttcagacctgagcgattcagtgcggactatcgtgcta
acttcgggcaccctctctcccatgggctccttttcctctgaacttggcatcaaattctct
atccagctggaggccaatcacgttatcaacaagtcacaggtctgggtcggtacagttggt
gcagggcctcagggtcgtaaactttgtgccacatttcagcatgcagagacatttgccttc
caagatgaagtaggggccctgcttttgaaagtgtgccacacagtgagtcgaggggttctc
tgcttcctgccatcctacaagatgttggataaactgagggaccgctggatgaacacaggt
ctgtgggaaaagcttgaggagcgaaagactgtgatcactgagccacgtggtggtggcaag
ggtgattttgatgcgcttctgcagacctactatgaggccatcagaggaacagcatccaac
tgtgaaaacagagatggagcgctgctggtagctgtttgcagagggaaggtgagcgagggc
ttagacttcaccgatgacaatgccagagcagtggtcactattggtatcccattccctaat
atcaaggatttgcaggttgaactaaagatgaaatataatgacaagcatgccaagtcccga
gggcttctgcctggtgggcgctggtacgagattcaagcatatcgggcactaaaccaggca
ctcggaaggtgtattcgacatcgaaatgactggggggcacttatactggtggacgaccgg
tttaagacgaacccaaacaaatacatcacaggcctgtcaaaatgggtgcgtcagctagtg
aggcaccatgacaccttcactggcgccatgctgtccctggagtccttttctcaaggccag
cggggggcagtagagaccttcgaagaaacacaatctcaggctgtcactcaataccccagc
ccttccaatgttacctctccccctcctgagataatcacccccaacaagcaatttgaccct
cagcctgcaccactaaacctacacaccgagatgcaggcagccaactctgagagcaggtct
tctgagtcaggtgaccaaaagtgtatacagcatccatctgaacctaccatattgcctagc
agaaaacgtaatgtccacagaacagtatggcctacagaccatctattcacctcctctcca
gtcagtagccaattcaagacttctatttttcaaatcgagcagggtgcaaattcagtgaac
aacaaacaacttcagcagggacttattcctgcgctttctgtgacaccaaagaaccaaata
aatggcgctcctgacctaaatgacagctcattggaacctcagcttgagcagctctttgtg
atccctagctctacgttgaagctgaacaccagtggaatggaccttgatgacactgaagag
ggtgaacaaagtatcttctacagccctgagctgtttgaaggagacggggaagagaaggaa
gagtctactgaggtggaaagatctcctgcagaagtcagccatcctgctagcagcacagcc
agcattcttttggacgatctgtttggtttagagcagggaaagaggacactctccaaagac
attgtgaacagcactgtcccagacaacacattattaaagggttgtgtagagcagaaagaa
tcatactgtagtgcagactttgagaatgtgtctgcctcacaaaatgacgccaacagtagt
cggtcacgtagactctccagatctaggcagaaaaggccaagcacatcagcagcatcaggt
aaactcaccaactattttaaaattgtgcccccaaccagccaaccatgcatcatcacagtt
gatgactga
DBGET
integrated database retrieval system
