Paroceanicella profunda: FDP22_20355
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Entry
FDP22_20355 CDS
T06319
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppru03009
]
FDP22_20355 (rimO)
Enzymes [BR:
ppru01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
FDP22_20355 (rimO)
Ribosome biogenesis [BR:
ppru03009
]
Prokaryotic type
ribosomal protein modification factors
FDP22_20355 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
CLP1_P
Thioredoxin_6
Motif
Other DBs
NCBI-ProteinID:
QDL94208
UniProt:
A0A5B8FJE2
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All DBs
Position
pD4M1A:508146..509531
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AA seq
461 aa
AA seq
DB search
MSTNPPDLRPDRAPAPLLDGTARPGQPRVGMVSLGCPKALVDSERILTRLRAEGYAISPD
YAGADAVIVNTCGFLDSAKAESLEAIGEALTANGRVIVTGCLGAEEEYIRGTHPSVLAVT
GPHQYEQVLDAVHAAVPADPNPFIDLLPASSVSLTPRHYSYLKISEGCNHKCRFCIIPDM
RGKLASRPAHAVLREAEKLVEKGVRELLVISQDTSAYGLDRKHDLNPWKGGEVRSHITDL
ARELGGLGAWVRLHYVYPYPHVRELIPLMAEGLVLPYLDIPFQHSHPDTLKRMARPANQA
KTLETIAGWREICPDITLRSTFIVGFPGETEAEFSHLLDWMEEARLDRVGAFKYENVDGA
RSNALPDHVPEAVKQERFERFMEVAQRISAEKLEAKVGSVQQVIVDSVDGDGAVCRTKAD
APEIDGNLFIDAGFEALKPGDMVTVTVDEASEYDLWGSITG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaatccgccagacctgcgccccgaccgcgctccagccccgcttctcgacggc
accgcccgccccggccagccgcgtgtcggcatggtgagcctcggctgcccgaaggcgctg
gtggacagcgagcgcatcctcacccggctgcgcgccgagggctacgcgatctcgcccgat
tacgccggcgccgacgcggtgatcgtgaacacctgcggcttcctcgacagtgcgaaggcc
gagagcctggaggcgatcggcgaggcgctcaccgccaacggcagggtgatcgtgaccggc
tgcctcggcgcggaggaggagtacatccgcggcacgcacccgagcgtgcttgccgtcacc
ggcccgcaccagtacgagcaggtgctcgacgccgtccatgccgccgtgccggcggatccg
aacccgttcatcgacctgctgccggcaagctcggtctcgctcacgccgcggcattacagc
tacctgaagatttccgagggctgcaaccacaagtgccggttctgcatcatccccgacatg
cgcggaaagctcgcctcccgccccgcccacgcggtgctgcgcgaggcggagaagctggtg
gagaagggcgtgcgcgagctgctcgtcatctcgcaggacacctcggcctacgggctcgac
cgcaagcatgacctgaacccctggaaaggcggcgaggtgcgctcgcacatcaccgacctc
gcgcgtgagctgggcggcctcggggcctgggtgcggctgcattacgtctacccctacccg
catgtgcgcgagctgatcccgctgatggccgaggggctggtgctgccctatctcgacatc
cccttccagcattcgcacccggacacgctgaagcgcatggcccggcccgccaaccaggcg
aagacgctggagaccatcgcgggctggcgcgagatctgcccggacatcaccctgcgctcc
accttcatcgtgggcttccccggcgagacggaggcggagttctcccacctgctcgactgg
atggaggaggcccggctggaccgcgtgggcgccttcaagtacgagaacgtcgatggcgcg
cgctccaacgccctgcccgaccatgtgcccgaagcggtgaagcaggagcggttcgaacgc
ttcatggaagtggcgcagcggatctcggcggagaagctggaggccaaggttggcagcgtg
cagcaggtgatcgtcgattcggtggacggtgacggcgcggtgtgccgcacgaaggccgac
gcgccggagatcgacggcaacctcttcatcgacgcggggttcgaagcgctgaagcccggc
gacatggtgaccgtaaccgtggacgaggcctccgaatacgacctctggggcagcatcacc
ggctga
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