Podospora pseudocomata: QC762_609880
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Entry
QC762_609880 CDS
T09797
Symbol
CLP1
Name
(RefSeq) Cleavage polyadenylation factor subunit clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
QC762_609880 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsd03019
]
QC762_609880 (CLP1)
Enzymes [BR:
ppsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
QC762_609880 (CLP1)
Messenger RNA biogenesis [BR:
ppsd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
QC762_609880 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
AAA_33
MMR_HSR1
AAA_22
AAA_18
ABC_tran
AAA_16
KTI12
Motif
Other DBs
NCBI-GeneID:
87912570
NCBI-ProteinID:
XP_062741271
LinkDB
All DBs
Position
6:complement(3805559..3807332)
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AA seq
470 aa
AA seq
DB search
MSIPGLGHISAQQASLPSTRTLTLHPFSEWRFQISATSTATCRLLSGTAERDGTELAQTK
TYNLTRCRSKIVTFTGATLEITGEFESEHVKHYPHSADSSFVTYLNLHFLLQARRSQSSS
GSGHGPRVMICGPPASGKSSLAKMLIGWATRQGEQPVLATVDPRDGMLALPGTLSAAVFG
TVMDVEDPEGGVGVGCTPSSGPSAVPVKLPVGYYFGRERVEDDEGLWKDLVRRLGSSVRA
KTGGDQGVRRGGVVVDTPAVEVRKGEVKVKGEDGEEERERGGGVEGLMHVIREFAVNIVI
VLGSPDLEAELRRRDRKTPLGEPVEIVNLDKPDGVVEQDRQHLLSSRKALIKDYFFGDSK
RALSPSVQSFSFDDVVIFRAVDAMDLDDPNQVLERAEISEEMSHWTLAVMDASVNDPLET
IRQAPVIGWVCVSDVDKDRRRLKILSTVSGRLTRPMVWGRWPEPYVNLLG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtccatccccggcctagggcacatatccgcccagcaagcctccctcccatcaacccgc
actctcaccctccaccccttctccgaatggcgcttccaaatatccgccacctccaccgcc
acctgccgactgctctccggaaccgccgagcgcgacggcaccgagctcgcccagacaaaa
acctacaacctcacccgctgccgctccaagatcgtcaccttcacgggcgccacgctcgaa
ataacgggtgaattcgagtccgagcacgtaaaacactacccccattctgccgactcgtct
tttgtcacctatctgaacttgcacttcctcctccaggcacggaggtcgcagagcagcagt
gggagtggtcatgggccgagggttatgatctgtggcccgccggcgagcgggaagagctcg
ctggcgaagatgctgattggttgggcgacgaggcagggggagcagcctgtgctggcgacg
gtggatccgagggatgggatgttggctttgccggggacgttgtcggcggcggtgtttggt
acggtgatggatgtggaggacccggaggggggggttggggtggggtgtaccccgtctagt
gggccgagtgcggtgccggtgaagttgccggtggggtattactttgggagggagagggtg
gaggatgatgaggggctttggaaggatctggtgagacggttggggagctcggtgagggcg
aagacggggggggatcaaggggtgaggagaggaggtgtagttgttgataccccggccgtg
gaggtgaggaagggggaggtgaaggtaaaaggggaggatggagaggaagagagggaaagg
gggggaggggtggaggggttgatgcacgtcattagagaatttgctgtcaatatcgttatc
gtgcttgggtcaccagacttggaagctgagttgagacgccgggataggaagacaccacta
ggggagccggttgagattgtgaatcttgacaaacctgatggagtggtggagcaagacaga
cagcatctgctctcgtcacgcaaggctctgatcaaggactacttttttggcgattccaag
cgagctcttagtccttcggtgcagtcgttcagttttgacgacgtcgtgatcttcagggcc
gttgatgccatggatctcgatgacccgaaccaggttctggagcgcgcagaaatctcagag
gaaatgtcacactggacgctggcggtcatggatgcctcggtcaatgaccccctggagaca
atacgacaggcgcctgtcatcggttgggtttgcgtatcggacgtggacaaggacagacgg
agactgaagatactgtctacggttagcggccggttgactcggccgatggtctggggacgg
tggccggagccgtatgtcaacctgttgggttag
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