Pseudomonas pseudoalcaligenes: BN5_0104
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Entry
BN5_0104 CDS
T03772
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppse
Pseudomonas pseudoalcaligenes
Pathway
ppse03030
DNA replication
ppse03410
Base excision repair
ppse03420
Nucleotide excision repair
ppse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN5_0104 (polA)
03410 Base excision repair
BN5_0104 (polA)
03420 Nucleotide excision repair
BN5_0104 (polA)
03440 Homologous recombination
BN5_0104 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppse03032
]
BN5_0104 (polA)
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_0104 (polA)
Enzymes [BR:
ppse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN5_0104 (polA)
DNA replication proteins [BR:
ppse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN5_0104 (polA)
DNA repair and recombination proteins [BR:
ppse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BN5_0104 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN5_0104 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CDM38720
UniProt:
W6QP39
LinkDB
All DBs
Position
101678..104473
Genome browser
AA seq
931 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLRSLRKQYPNSPFAVVFD
AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR
QAAGEKRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDEGGVKEKFGVGPELIIDYLALM
GDKVDNIPGVPGVGEKTALGLLVGIGGGLDMLYANLDKVPELPIRGAKNLPAKLEEHREM
AYLSYQLATIKTDVPLNIEIDSLHPDEPDQAALVELYGELEFKNWLDDLLRQNKSLAAKT
AAPAEDLFAEPTDAAAEDAAEPAPASTGDYQLVLEQAQFDAWLKKLEQAELIAFGSETTS
IDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQLDRDAVLKALKPILEDPAKAKVGQH
AKYDINVLANASTPIMVQGVAFDTMLESYVLDSTATRHDMDSLALKYLNHSTIRFEDIAG
KGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLA
RIERNGALVDAKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPV
ISKTAKGQPSTAEAVLAELAEQDFELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHT
SYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHL
AKDKGLLDAFHHDLDVHRATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQI
DVERKEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRK
GAERAAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDELVLEVREELIDEVS
AKLKSLMSGAADLDVPLLVEVGVGANWDEAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgttctggtcgacggttcctcgtacctgtaccgcgccttccac
gccctgccgccgctgaccacttccaagggcatgcccaccggagcggtaaaaggcgtgctg
aacatgctcaggagcctgcgcaagcagtacccgaacagccccttcgccgtggtcttcgac
gccaagggcggcacctttcgcgacgagctgttcgccgagtacaaggccaatcgcccgtcc
atgccggacgagttgcgcgtccaggtcgagccgctgcatgccagcgtgcgcgccctgggg
ttgccgctgctgtgcgtcgaaggcgttgaagctgacgacgtgatcggcaccctggcgcgc
caggcggcgggggaaaagcgcgacgtggtgatctccaccggcgacaaggacatggcgcag
ctggtctgcccgcacgttacgctggtcaacaccatgaccggaagcgtctatgacgaaggt
ggcgtgaaagagaaattcggtgtcggccctgagctgatcatcgactatctggccctgatg
ggcgacaaggtcgacaacatccccggcgtgcccggcgtcggcgagaagaccgccctcggt
ctgctggtcggcattggcggcggtctcgatatgctctacgccaacctcgacaaggtccct
gagctgccgatccgcggcgctaagaacctgccggccaagctcgaagaacaccgcgagatg
gcctacctgtcgtatcaactggcgaccatcaagaccgacgtgccgctgaatatcgagatc
gactcgctgcatcccgacgagccggatcaggccgcgctggtggagctttacggcgaactg
gaattcaagaactggctggacgacctgctgcggcagaacaagtcactggcggccaagact
gctgcgccggctgaagatctgttcgccgaaccgactgacgcagccgccgaagatgccgct
gaacccgcaccggcaagcaccggtgattaccagcttgtgctggaacaggcgcagttcgat
gcctggctgaagaaactggagcaggcagagctgatcgccttcggcagtgagaccaccagc
atcgacgcccagcaggcgcaactggtcggcctgtccttcgcggtcaaggccggtgaagcg
gcctatatcccgctggcgcactcctacatgggcgtgccgcagcagctcgaccgcgatgcg
gtgctcaaggcgctcaagccgattcttgaggatccggccaaggccaaggtcggccagcac
gccaagtacgacatcaacgtcctggccaatgccagcacaccgatcatggtgcagggtgtg
gcctttgacaccatgctcgaatcctatgtgctggactccaccgccacccgccacgacatg
gacagcctggcgctgaagtacctgaaccacagcaccattcgtttcgaggacatcgccggc
aagggcgccaagcaactgaccttcgaccagatcgctctggagcaggccggcccctacgcc
gccgaagatgccgacgtgaccttgcgtctgcatcaggagctttggggacgcctcgaagcc
gtgccctccttggccaaggtgctgcgcgaaatcgagatcccgctggtgccggtgctggcg
cgtatcgagcgcaacggcgcactggtcgacgccaagctgcttggcgagcaaagtgtcgag
ctgggcgaaaaactggtggagctggagcgcaaggcgttcgagatcgccggtgaggaattc
aatctggcctcacccaagcaactcggcgtgatcctctacgaaaaactcggctacccggtg
atcagcaagactgccaagggccagccctccaccgccgaagcggtactggcggaactggcc
gagcaagatttcgagctgcccaaggtgctgatgcagtaccgcagcttgagcaagctcaag
agcacctacaccgacaagttgccggagcagatcaacccgcgcacggggcgtatccatacc
agctatcaccaggcggtcgccgctactggccgcctgtcgtcgagcgacccgaacctgcag
aacatcccgatccgcaccgccgaaggccggcgcatccgccaggctttcgtggcgcccaag
ggctacaagctgatggcggcggactactcgcagatcgagctgcgcatcatggctcatctg
gccaaggacaaaggtctgctcgatgccttccaccatgacctggacgtgcacagggccact
gctgccgaggtgtttggtgtggcactggaagaggtgaccagcgaccagcggcgcaaggcc
aaggccatcaacttcggcctgatctacggcatgagcgccttcggcctggccaagcagatc
gatgtcgaacgcaaggaggcgcaggcctacatcgaccgctacttcgcccgttacccgggg
gtgctgacctacatggaaagcacccgcgcgcaggccgccgagcagggttatgtggagacg
gtctacggccggcgcctgtacctgccggaaatccacgcgcagaaccaggccatgcgcaag
ggcgccgagcgcgcggcgatcaacgcaccgatgcagggcacggcggcggacatcatcaag
cgcgccatgatcgccgtggatggttggctgcaggacagcggcatcgacgcccgcatcatc
ctgcaggtgcacgacgaactggtactggaagtgcgtgaggaactgatcgacgaggtcagc
gccaaactcaagagcctgatgagtggtgccgccgacttggacgtaccgctgttggtggaa
gtcggtgtcggcgccaactgggacgaagcgcattaa
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