Podospora pseudopauciseta: QC763_102650
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Entry
QC763_102650 CDS
T09815
Symbol
RPO21
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03020
RNA polymerase
ppsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QC763_102650 (RPO21)
09124 Replication and repair
03420 Nucleotide excision repair
QC763_102650 (RPO21)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsp03021
]
QC763_102650 (RPO21)
03400 DNA repair and recombination proteins [BR:
ppsp03400
]
QC763_102650 (RPO21)
Enzymes [BR:
ppsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QC763_102650 (RPO21)
Transcription machinery [BR:
ppsp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
QC763_102650 (RPO21)
DNA repair and recombination proteins [BR:
ppsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
QC763_102650 (RPO21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MafB
zf-C4pol
Motif
Other DBs
NCBI-GeneID:
87927164
NCBI-ProteinID:
XP_062769708
LinkDB
All DBs
Position
1:1024016..1030576
Genome browser
AA seq
1757 aa
AA seq
DB search
MANLIFAHSSAPLRTIQEIQFGLLSPDEIKAMSVAHIVYPETMDETRTKPRDGGLNDPLL
GSVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSKVLADRS
DPAYAAAMKIRDPKTRFKRVWDICKAKRVCDNLAPQKPEDGSYDPNAGPADGGHGGCGNT
QPVVRQQALTLYAMVEHKDDEGVKTKEKKVLTPEMTLNIFRRMSEDEMVDIGLNISQARP
EWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAISEGSPQHI
ITDYENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDANISLDEVGVPRSIARTLTFPETVTPYNIEKLTGYVKNGPNEHPGAKYVIRS
DGTRIDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGHRVRVMPYSTF
RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQDTL
AGVYKLTRRDTFLTKEQVMDVMMWVPDWDGVIPLPAIWKPRPRWTGKQIISMVIPSIINL
AMGADGEERDAPLKDEGLLIQQGQLIYGLLTKKSVGAAGGGIIHLCYNELGPSGAMDFLN
GCQRVVNYWLLHCGHSIGIGDTIPDDKTIELIEKHINDEKAVVAKLTKMATENQLEALPG
MNVRETFENKVSAALNTARDKAGTSTEKSLKDLNNAVTMARSGSKGSSINISQMTALVGQ
QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT
AVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDIIQFVYGEDGLDGIAIEKQKVDHMN
LNNAKFDKRFRLDVMDETSSAAALDALEYGREMVSDPAVQSLLDEEYEQLLADRKQVREI
NRKKKDDDSMQLPLNIGRIIDTAKKLFKVDSTQRSDLTPKDVIPAVQALLARMVVVRGED
ELSKEADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGELENRWSRSMVSPGEMV
GVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYLDKER
ATQEDAKSMRNLVEHTSLRSVTAMTEIYYDPDITSTVIPEDFDLVESYFLIPDTSDSQPI
DSQSRWLLRIMLDRQKMLDKGLRVEDVAAAIKQEYKKDVAVIFSDNNAEEMVVRIRVIRQ
NDDKDADGNTIIEDDVMLKRLEKHLLDSCTLRGVEGIERAFLNKTARLLELPDGSQTANK
DKEPACEEWYLDTQGTALREVLTVEGVDTTRTYTNDLYQVVDVFGIEAARSALMAELTQV
LAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAAV
GELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRMGLMAGMTIKGNQLEG
AATPYDTGSPMADNGYLGGSYSPTMGNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYA
TSPGRPTSPFTTSPTSPFSYGYSPTSPAAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPT
SPMLRPGSPTSPSYSPTSPSYSPASPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASP
AFQATSPSYSPASPNWSPTSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGR
AAGSGGDQYSPTSPTND
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccttatcttcgctcactcgagcgcgccgctccggacaattcaggagatccag
tttggtctgctgtcgccggatgaaatcaaggccatgagcgtagcccacatcgtctatcct
gagactatggatgagacgagaaccaagccacgcgatggtggtctcaacgaccctctactc
ggctcagtagaccgacaattcaaatgcaagacatgtaccgaaaacatgtcagagtgccca
gggcatttcggacacatcgaactggcccgcccagtctaccatccaggattcatcaaacgg
acaaagaaattgctggaaatcgtctgccataactgtagcaaggttttggctgatagaagt
gatcctgcttacgccgcggctatgaagattcgcgaccccaaaactcgcttcaagcgtgtg
tgggacatctgcaaagcgaagcgcgtttgcgataaccttgcgccgcagaaacccgaagat
ggctcgtatgatcccaacgcgggcccagctgatggtggtcacggaggttgcggcaatacc
cagcccgttgtgcgtcagcaggctctgactctgtatgccatggtcgagcacaaggacgac
gaaggtgtgaagaccaaggagaagaaggttcttacacccgagatgactctcaacatcttc
cgtcgcatgtcagaggacgagatggtcgatatcggtctcaacatttcccaagcccgtccc
gagtggatgatcatcacagttcttcccgtgcccccgccgccagtgcgtcctagcatttct
atggacggtactggcaccggtatgcgcaacgaagacgatttaacgtacaaacttggcgat
atcattcgcgccaacggcaacgtcagacaggccatctcagaaggctctccccagcacatc
atcacggattatgagaatcttctccagtaccatgtcgccacctatatggacaacgacatt
gctggtcagccgcaagctctgcaaaagagcggccgtccagtgaaagccatccgcgcgcgt
ctcaagggcaaagaaggtcgtctgagaggtaacttaatgggaaagcgagtcgacttctcg
gcccgtactgtcatcacgggtgatgccaacatttctctggatgaagtcggtgtcccacgc
agcattgcccgcaccctcaccttccccgagactgtcactccctacaacattgagaagctg
accggctatgtcaaaaatgggccgaacgaacatcccggtgccaagtacgtaatcaggtcg
gacgggacgcgcatcgatcttcgccatcacaagcgtgcgggagctctgcagctggagtac
gggtggaaagtcgagcgtcatttgatcgacggtgactttatcatcttcaaccgtcagccc
tctctccacaaggagtccatgatgggtcacagagtgcgcgtcatgccctactctactttc
cgcctgaatttgtccgtcacatcgccttacaacgccgatttcgacggtgatgaaatgaac
ttgcacgttccgcagaccgaggagacacgtgctgaagtcaaggagctgtgcatggttcct
ctcaacatcgtctctccccagcgtaacggcccgctcatgggtatcgtccaggatacactg
gccggcgtatacaagctcactcgtcgcgacaccttcctcaccaaagaacaggtgatggat
gtcatgatgtgggtcccagactgggatggagtcattccccttcctgctatctggaagcct
aggccccggtggactggcaagcagatcatcagcatggtgattcccagcattatcaacctt
gccatgggtgccgatggcgaagagagggacgccccgcttaaggatgagggtcttctgatt
cagcaaggtcagctcatctacggcttgctcaccaagaagagtgtcggtgctgctggaggc
ggcatcattcatctgtgctacaatgagttgggcccctccggtgccatggacttcttgaac
gggtgccaaagagttgtcaactattggcttctccactgcggccacagcattggtatcggt
gacaccattcccgatgacaagaccattgagctcattgaaaagcacatcaatgatgagaag
gccgtggtcgccaagcttaccaagatggccactgaaaaccagctcgaggctctcccgggt
atgaacgtccgtgagacgttcgagaacaaggtgtcggctgccttgaatacggctcgtgac
aaggccggtacgtctaccgagaagagtttgaaggatctcaacaacgccgtcaccatggct
cgttcgggttccaagggctcttccatcaatatctcccaaatgacagcgttggtcggccag
cagattgtcgaaggaaagcgcattcccttcggcttcaaataccgcaccctccctcatttc
accaaggatgattactcccccgaggctcgcggtttcgtcgagaactcgtatctccgtggc
ttgactccttcggaatttttcttccacgccatggctggtagagaaggtttgatcgatact
gcagtcaagacagccgagactggttacattcagcgtcgcttggtcaaggctcttgaagac
gctgaggcgcattacgatggtacggtgcgcaactcgctgggtgatatcattcagttcgtg
tacggtgaggatggccttgatggtattgccattgaaaagcaaaaggtcgaccacatgaac
ttgaacaacgccaagttcgacaagcgcttccgtctcgacgtgatggacgaaacaagctct
gctgccgctctggacgccctggaatatggccgagagatggtcagcgatcctgccgtccag
tcgcttttggatgaggaatatgagcagcttcttgccgaccggaagcaagtccgtgaaatc
aaccgcaagaagaaggacgatgatagcatgcagctgcctcttaacattggccgtattatt
gatactgccaagaagctcttcaaggttgacagtacccagcgcagcgacctgacgcccaag
gatgtcattcctgctgtgcaggccttgcttgctcgcatggtggtagttagaggcgaggat
gaattgtccaaagaagctgattacaacgccaccattctcttcaagattcagattcgctct
cgtcttgcgttcaagcgcctggctgttgagcagcggctcaacaagctcgccttcgaccat
gttcttggtgagctcgaaaaccgttggtcccggtccatggtctctcctggtgagatggtt
ggcgtgttggctgcccagtccattggtgagcctgccacccagatgacgttgaacaccttc
catttcgccggtgtttcttctaagaacgtcaccctcggtgtaccgcgtctcaaggaaatc
ctcaacgttgccaaggacatcaagactccgtccatggttgtctaccttgacaaggagaga
gctacgcaagaagacgccaagtcgatgcgtaacttggttgaacacaccagtctgagatcc
gtcacagccatgactgagatctactacgaccccgatatcacttccactgtcatccccgag
gatttcgatctcgtcgagtcctacttccttattcccgacacctctgactcgcagcccatc
gatagtcaatcccgctggctactcagaatcatgctcgatcgtcaaaagatgcttgataag
ggcttgcgtgtggaggatgttgccgctgctatcaaacaggagtacaagaaggatgtcgcg
gttattttcagtgacaacaacgccgaggagatggttgttcgtatccgggtcattcgtcaa
aacgatgacaaggatgctgacggtaacactatcatcgaggatgacgttatgctgaagcgt
ctggagaagcatttgcttgattcttgtaccctccgtggcgttgaaggcatcgagcgtgct
ttcctgaacaagaccgccagattgctcgaactccccgacggatcgcaaacggccaacaag
gacaaggagccagcctgcgaggagtggtatcttgatacccagggtacggcccttagagag
gtcttgacggttgagggtgttgacactactcgcacctacaccaacgacttgtaccaggtt
gttgatgtgtttggaatcgaagctgctcgctcggctctcatggctgagttgacgcaagtg
cttgccttcgacggttcctatgtcaaccatcgccatttggctctattggtcgatgtcatg
acctatcgcggcagcattgctgccgttactcgtcatggtatcaatcgcgctgatactggt
gcgctcatgcgttgctctttcgaggagactgtcgagattcttctcgaagccgctgcggtt
ggtgagcttgacgactgccgcggtatttccgagaacgtcatgcttggtcagatggcgccc
atgggtactggtcactttgaggttcttctcgaccccaagatgctggagactgtcatctct
gataactctcgcatgggtctcatggctggcatgaccatcaagggtaaccagcttgagggt
gccgcgaccccctacgacacaggctcacctatggctgataacggctaccttggcgggtct
tactccccaaccatgggtaacttctcccctattgtgggcaatgaatctggtggcccgcct
gggttcgcatctgaatacggtggtggtgggtatggttccagctcggtcaacccgtatgct
acaagccctgggcgacctacgagtcccttcactacctccccgacgtcgcctttcagctac
ggttactccccgacgtcgcctgctgctgggtattcccccacctctccgctcatcgacgcc
ggtggtcggtttgcttcgagccctcagttcagcccgtcctcgccgtctttctcgccaacg
tcgcctatgcttcgtcctgggagcccaacaagccccagctacagcccgacttcgccgagc
tattctcctgcgtctccggctgccacccgtcactactccccgacatcgcccgcgcagttc
cagtcaccgacctcgccgtcgtactcgccgacgagtccgagctacagcccagcgtcccct
gcgttccaggccacgtcgccatcatactcgccggcgtcgcccaactggtcgcccacgtcg
ccagatgcttactcgccgacaagccccaccttccagcgctctcccgggcagcaaatgtct
ccaaccagccctggctattcaccaacgtctcctagcttctctcccagaacgccgggtcgc
gccgcgggaagtggtggtgatcaatactcgcctacctcccccacgaatgactga
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