Podospora pseudopauciseta: QC763_503880
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Entry
QC763_503880 CDS
T09815
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
QC763_503880 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsp03400
]
QC763_503880 (MSH6)
DNA repair and recombination proteins [BR:
ppsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
QC763_503880 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_23
AAA_27
AAA_21
AAA_29
Motif
Other DBs
NCBI-GeneID:
87933317
NCBI-ProteinID:
XP_062764212
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Position
5
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AA seq
1217 aa
AA seq
DB search
MGDKTAARTPAKTPSTAKKQGQAPSTGKQQSILGFFSKTPASSANAPNSSPSVKPTPSLK
KASSSQCLQETTKSNSARRPPDATPVPSSDAPEPTSSQENRDVSTAKACVSKSRTTMRDT
TTLPSSPSRKVKKAVNYAESSDEEDEEFIASLTSRKSRQRRPRAAVIDEDDEDTYEAGAN
EIEEEDDEMEDFVVSDDSDAPSRSKKRKRPAAKTSAPRKKTTNPSPPRSAAPDLDGDEPM
EDVPPSTSTAQKWKYDPDSIDHDEPQETVVKATPAAKKPSSTPKPKPKAHTQEPEKRYPW
LANILDGNKKPPTDPEFDPTSIYIPPAAEKQFSAFEKQYWDIKKNLWDTVVFFKKGKFYE
LYENDATIGHQLFDLKMTDRVNMRMVGVPESSLDMWVNQFVAKGFKVARVDQMESALGKE
MRERDAKAKKADKIIRRELACILTAGTLVDGSMLQDDMATYCAAIKESVVDGKPCFGIAF
VDAATGQFLISEFEDDVDLTKFETFVAQTCPRELVLEKSRLSTKALRILKNNTAPTTIWN
YLKPDTEFWDAETSRRELECNGYFSNADNQEEVWPEKLEKVKEKDLLMSALGGLVHYLRF
LKLERSLLSQGNFEPYNPIHRNGTLILDGQTLINLEIFSNTANGGVEGTLFNLLNRCITP
FGKRLFRQWVCHPLCNIQKINERLDAVDMLSNDKSALAEFSSHMSKMPDLERLISRIHAG
SCRPEDFVRVLEGFEQIDYTMNFLGAFGGGNGLVDRLISCMPDLKEPLGYWETAFDRKKA
RDSKVLIPERGIEEDYDNSEDELNRIKEELAQLLEKQKTALKCRQLKFTDVGKEVYQIEV
PKSTKVPSSWRQMSATAAVKRYYFRELESLVRELQETEETHSQIVKEVASRFFKKFDVDY
EVWLQAIRIISQLDCLMSLAKSSLALGLPSCRPEFVDDERSVLHFEELRHPCMINRVDDF
IPNDVHLGGEQAKINLLTGANAAGKSTVLRMTCTAVIMAQIGCYVPAVSAKLTPVDRIMS
RLGANDNIFAAQSTFFVELSETKKILAEATSRSLVILDELGRGTSSYDGLAVAQAVLHHV
ASHIGCVGFFATHYHSLATEFENHPEIRARRMQIHVDGGNRRVTFLYKLEDGVAEGSFGM
HCAAMCGIPNKVIEEAEVAAKEWEHTSRLKESLERAKTGCYIPLGVLSDVASLLRVGGEA
EVQERGVEVLLRAIEAL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaagacagcagcccgcaccccggcaaagacgccgtctacagctaagaaacag
ggacaggcgccgtcaacgggcaagcagcagagcattctcggcttcttttctaagacacca
gcaagcagtgccaatgctcccaattcttcgccctcggtcaagccgacaccttccctcaag
aaagccagctcctcgcaatgcctccaagagacaaccaagtccaactctgcgcgacgacca
cctgatgctacacctgtccccagcagtgacgcccctgagccgaccagctctcaggaaaac
agagacgttagcactgccaaggcatgtgtgtcgaaatcgaggacgaccatgagggacacc
acgacgctgcccagcagcccttcccgaaaggtcaaaaaagccgtcaactatgccgaatca
tccgacgaagaagacgaggagttcatcgcctcattgacatctcggaagagccgacagcgc
cgcccgcgtgcggcggtcatcgacgaggatgatgaggacacgtacgaggcaggcgccaat
gaaattgaagaggaggacgatgaaatggaagactttgtagtctcggacgactcagatgct
ccatccagatcgaagaagaggaaacggccggctgccaaaacctctgcgccacggaagaag
accactaacccatcgccgcctcgttcagctgccccagacctggacggtgacgagccaatg
gaagacgtccccccgtcgacgtccaccgcacagaagtggaaatacgaccctgacagcatc
gatcatgacgagccacaggagacggtcgtcaaggccactccagctgcgaagaagccgtcg
tcaacacccaaaccgaaaccgaaagcgcacactcaggaacccgagaagagatatccctgg
ctggccaacatcctggatggcaacaaaaagccaccaaccgacccagagtttgatcccacg
tccatctacatcccaccggcagcggagaagcagttctctgcctttgagaagcagtactgg
gacatcaagaagaatctctgggataccgtcgtgttcttcaaaaagggcaagttctacgag
ctgtacgaaaatgatgcaaccattggtcaccagttgtttgatctgaagatgacagaccgc
gtcaacatgcgcatggtgggtgtccctgagagctcactcgatatgtgggtcaaccagttc
gtcgcgaaaggcttcaaggtcgctcgtgtggaccagatggagtccgcgcttggcaaggag
atgcgcgagcgtgacgcaaaggccaagaaggcggacaagatcatccgacgtgagcttgct
tgcatcttgactgccggcaccctggtggacggcagcatgctccaggatgatatggccaca
tactgcgcagccatcaaggagtctgttgtggatggcaagccttgctttggcattgcgttt
gtggatgccgccactggtcagtttttaatttccgagtttgaggatgatgtcgacctcact
aagttcgagacctttgttgcccagacatgccctcgggaactggtgctggaaaagtcgcgg
ctgtccaccaaggccctccgcatcctcaagaacaacactgcacctaccaccatctggaac
tatctcaaacccgacaccgagttttgggatgctgagacgtcgaggcgggaactggagtgc
aacggttacttctccaacgctgataaccaggaggaagtctggccggagaagctcgagaag
gtcaaggagaaggacctcttgatgtcggctcttggcgggctagttcattacctgcgcttc
ctcaagctcgaacggagcttgctctcgcaagggaactttgaaccatacaatccaatccac
cgcaatggcacgctcattttggacggccagaccctcatcaacctcgagatcttctccaac
acggccaacggtggcgtggaaggaacgctttttaacctcctcaacaggtgtattacgccg
tttgggaagcgtctcttccggcagtgggtctgccacccgctctgcaacatccagaagatc
aacgaacgtcttgatgcggtggacatgctcagcaacgacaagagtgcgcttgccgagttc
tcgtcccacatgagtaagatgcccgacctggagcgattgatctcgcgcatccacgccggc
tcctgcagacctgaagactttgtccgtgttctcgagggctttgagcagattgactacacc
atgaacttccttggcgcttttgggggtggcaatgggctggtggaccggctcatttcttgc
atgcccgatctcaaagagccccttggttactgggagacggcctttgacaggaagaaggct
cgcgacagcaaggttctcatccccgagcgggggatcgaggaggattatgacaacagcgag
gacgagctgaaccgcatcaaggaagagttggctcagctgctcgagaagcaaaagacggcc
ttgaagtgcaggcaactcaagttcaccgacgtcggcaaggaggtgtaccagattgaagtg
cccaagtcgaccaaggtgccttcgagttggcgccagatgtcagctacggccgctgtcaag
cggtactacttccgagagctggaaagccttgtccgtgagctccaggaaaccgaggagacg
cactcccagatcgtcaaggaggtcgcgtcaaggttctttaagaaatttgacgttgattac
gaggtgtggttgcaggccattcgcatcatctcgcagctggactgcctgatgagcttggcc
aagtcgtctcttgccctcggccttcccagttgccgtccggagtttgttgatgacgagcgg
agcgtcttgcactttgaggagctccgtcacccgtgcatgatcaacagggtggatgacttt
attcccaacgatgtccacctcggcggcgagcaggccaagattaaccttcttactggtgcc
aacgcggctggaaagtcgactgttcttcgaatgacttgtactgccgtcatcatggcccag
attggctgttacgtcccggctgtgtcggccaagttgactcctgtcgaccgtatcatgtct
cgtctcggcgccaacgacaatatttttgccgcccaaagcaccttctttgttgagctgtcc
gaaaccaagaagattctggccgaggctacgtcccgctcccttgttattcttgacgagctc
ggacgtggcacctcttcgtatgatggcctggctgtcgcccaagctgttcttcaccatgtg
gcatcccacattggttgtgttgggttctttgctacccactaccacagcctggcaaccgag
tttgagaaccaccctgagatccgggcgcggaggatgcagattcacgtcgacggtgggaac
cggcgagtgacgttcttgtacaaactggaggacggtgttgcagagggatcgtttggtatg
cactgtgctgccatgtgcggtattcccaacaaggtcatcgaggaggccgaggtggcggcc
aaggagtgggagcacaccagccggttgaaggaaagcttggagagggccaagacggggtgt
tacatccctctcggagtgctgagcgatgtggcaagcttgctcagggttggtggtgaggca
gaagtgcaggagcggggggtggaggtgctgttgcgagccattgaggcgctctga
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