Pungitius pungitius (ninespine stickleback): 119218783
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Entry
119218783 CDS
T07626
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03440
Homologous recombination
ppug03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119218783 (brip1)
03460 Fanconi anemia pathway
119218783 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppug03400
]
119218783 (brip1)
Enzymes [BR:
ppug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119218783 (brip1)
DNA repair and recombination proteins [BR:
ppug03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119218783 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
119218783 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PAS
Motif
Other DBs
NCBI-GeneID:
119218783
NCBI-ProteinID:
XP_037329362
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MASSPVEYMVGGVEIHFPCKAYPSQLSMMNSIIQGLKHGKHCLLESPTGSGKSLALLCSA
LGWQQAELDKQKMGEGLLEKSQLDKNIKPCHCVCHSKVSSCAAATAASQPVVDLTVSPCK
ELTQLPASEQSPFTEELHPRKQSLASRLSGKMLSSLIHEEDDDFQPEKKRFRTAEHQQRK
RQHVEQGVVFIDDEQENEPSCAQSWTTVPTTAASGLSSSSCSPERCFHCTCASTKDGANK
KVKDGKKKIPTIFFGTRTHKQITQIAHELKRTVYSKVPMTILSSRAHTCVNGRVAPHANR
NELCKELLDDKEGGSCSYYHGITKIRGRSTLQQALRLSDAWDIEDFVAQGRGRRFCSYYA
ARELMEEASIIFCPYNYLLDPLIRESMEIDLAGQIVLLDEAHNIEDCARESSSYTVDHQS
LLMCRQELDNMVKKNIKPSDHERLSGFCYSLINWIHENKSLMSDRGFEAACKVWNGRDVL
GMFNDIGITPGTYSLLKKSLAAVLEKENLQVIKGKEVKFDVPTISSATTTVLKSLFMVLG
FMYSGDSCSVADDYRIALQKTFTWTNQVALDAPDAQGFFVRPHNRQRNGTRVRSEVLTLS
FWCLNPAVAFAYFRTAVHSVVLTSGTLSPMGSFSSELGVDFTIKLEANHVIDKSQVWVGT
VGEGPQGRKLLATFKHTETYVFQDEVGALLLHVCQVVAKGVLCFLPSYKMLDKLRERWNN
TGLWKKLEHHKAVIPEPRGGGKGDFDQLLQQYYDAIKYCEEERDGALLIAVCRGKVSEGL
DFTDDNARAVITIGIPFPNIKDLQVELKMKYNDQHCKSRDLLAGHQWYEIQAYRALNQAL
GRCIRHKNDWGALILVDDRYGKSNKYITGLSKWVRQLVQHHDTFNNAMHSLVAFSQVQRK
VQGPPAAVSPPNSQLGGRGLRDATDPPTPCSCVKQPEPQKDASPSSFHLFAGTQGKAKQR
EKAEWSKMKQSPTTSHHKNAAKPPYSIFTSSPNCLKKPIFKRKAGCHSKPGDQHQTSASQ
WKTGATCTTRGAGDGSVEVTGEPHKLVSEPSRERTPPSCERELPSKDNPGEEKEDESEED
KSIYFTPELFEGEGDDEEETPQRETESGPTVLLVAESPTALSEELCGSEQARASDGKQAE
EGEQVEKSRSRKQAPSTPTGN
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatccccggtagagtacatggttggaggggtggaaatacatttcccctgcaag
gcgtacccgtcccagctgtctatgatgaattcaatcatacaaggactgaagcatgggaag
cactgtttgctggagagcccaacaggaagcgggaagagcttggctttgctctgctcggct
cttggctggcagcaggcggagttagataaacagaaaatgggagagggtcttttggagaaa
agccagttggataaaaacatcaagccatgccactgtgtgtgccatagcaaagtcagcagt
tgcgcagcagccacagcagcatcccaacctgttgtggacctcactgtgtcaccttgcaaa
gagttgacacagcttccagcatctgaacagagcccatttaccgaggagttgcatccaagg
aaacaatctctagcctctcgtctgtctgggaagatgctgtccagcctcattcatgaagaa
gatgatgactttcagccagagaagaagcgctttcgaactgctgaacaccagcagcgcaag
aggcagcatgtggagcagggagtggtatttatagatgatgagcaggaaaatgagccttcg
tgtgctcagagttggaccacggtgccaaccacggcagcatctggtctgtcctcatcatcc
tgctctcccgagcgctgcttccactgcacgtgtgcctcaaccaaagacggggcgaataaa
aaagtaaaagatggcaaaaagaagatcccgacgatcttctttggcactcggacacataag
cagataactcagattgcccacgagctgaagcgcaccgtttactctaaggtgcccatgacc
atcttatccagcagggcccacacatgtgtcaacggtagggtggcgcctcacgccaaccgc
aacgaactctgcaaggaactgctggatgataaagaaggcggttcatgcagttactaccat
ggtatcacaaagatacggggcaggtccacgctgcaacaggcccttcgactcagtgacgcc
tgggacattgaggactttgttgcacagggcagagggcgccggttctgctcctactatgct
gcccgtgaacttatggaggaagcctccatcatattctgtccatataactacctgctggac
ccattgatcagagagagtatggagatcgacctggcaggacagatcgtgctgctggacgag
gcccacaacattgaggactgtgcaagggaaagttccagctacacagtagaccaccagagt
ctgctgatgtgcaggcaggagcttgacaacatggtaaaaaaaaacatcaaaccctccgac
catgagcgactcagcggattctgctatagcttgatcaactggatccatgaaaacaaaagc
ctgatgtctgatcggggatttgaggcagcctgtaaagtctggaatggacgggatgtactg
ggcatgtttaacgacatcggcattactccaggcacctacagcctactaaagaaaagcctg
gcagcagtgttagagaaagagaaccttcaagtcatcaaaggtaaagaggtcaaatttgat
gtcccgaccatcagctcggcaaccaccactgtcctcaaaagcctcttcatggtgctgggc
ttcatgtactctggggacagctgcagtgttgcagacgactaccggatagctctgcagaag
accttcacttggacaaaccaagtcgcacttgacgctcctgatgcccagggcttttttgtt
cggccacacaacaggcaacgcaacggcaccagagtccggtcagaagtcctgactctcagc
ttttggtgccttaaccctgctgtggcttttgcctacttcaggacggcagtgcacagcgtt
gtgctgacttcagggaccctgtcacccatgggctccttctcctcagagcttggggttgat
ttcaccatcaagctggaggccaaccacgtgatcgacaagtcccaggtgtgggtgggcact
gttggtgaaggaccccagggcaggaagctgttggctaccttcaagcacactgaaacctac
gtctttcaggacgaggtgggcgctctgctgctccacgtctgccaagtcgtggcaaagggt
gtgctctgctttctgccttcctacaagatgctggacaagctgcgagagcgatggaacaac
actggcctctggaagaagctggaacaccacaaagctgtgatcccagagccccgtggaggg
ggaaagggggactttgaccaactgctccagcaatactatgacgccatcaagtactgcgag
gaagaaagagatggcgcgctgctcattgctgtctgtaggggaaaagtgagtgaaggactg
gactttactgatgacaacgccagggcggtcatcaccattggaatccccttcccaaacatc
aaagaccttcaagtggagctgaagatgaagtacaatgaccaacactgcaaatccagagat
cttcttgcaggccatcaatggtacgagattcaggcctacagagctctgaaccaggccctg
ggaaggtgtatccgccacaagaatgactggggcgcgctaattctggtggatgaccgttat
gggaaatccaacaagtacatcacaggtctgtctaaatgggtccgccagctggtgcagcat
cacgacacgttcaacaatgccatgcactctctggtagccttctctcaggtgcagcggaag
gtgcaggggcctcccgctgctgtctcacctccaaacagtcagttggggggtcggggtctg
cgcgatgccacagaccctccgaccccctgctcatgtgtcaaacagcctgaaccccagaag
gacgcaagtccttcaagcttccatctcttcgcgggtacacaggggaaggcgaagcaaagg
gagaaggcagaatggtcaaagatgaagcaaagtcctaccacgtcgcaccataaaaacgca
gctaagcctccatacagcattttcacctccagccccaactgcttgaagaagccaattttt
aaaagaaaagctgggtgtcactcaaagcctggtgatcagcaccagacctccgcttcacaa
tggaagactggagcaacttgtactacacgaggggctggagacgggtccgttgaagtcaca
ggggaaccacacaagctggtttcggagccttctcgagaaaggaccccgcccagctgtgag
agggaattgccatcaaaagacaatcctggcgaggagaaagaggatgagagcgaagaggac
aaaagcatctattttaccccagaacttttcgaaggtgaaggcgacgacgaagaagaaacc
ccacagagagagaccgaatcaggtcccacggtgcttttggtggcagagagccctaccgcc
ctgtcagaagaactctgtggctctgagcaggcccgagcctctgatggaaagcaagctgag
gagggagagcaggtggagaagagcaggtccagaaagcaagctccctctacccctacaggt
aactaa
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integrated database retrieval system
