Pseudomonas putida NBRC 14164: PP4_37140
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Entry
PP4_37140 CDS
T02707
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ppun
Pseudomonas putida NBRC 14164
Pathway
ppun00071
Fatty acid degradation
ppun00280
Valine, leucine and isoleucine degradation
ppun00310
Lysine degradation
ppun00362
Benzoate degradation
ppun00380
Tryptophan metabolism
ppun00410
beta-Alanine metabolism
ppun00640
Propanoate metabolism
ppun00650
Butanoate metabolism
ppun00907
Pinene, camphor and geraniol degradation
ppun00930
Caprolactam degradation
ppun01100
Metabolic pathways
ppun01110
Biosynthesis of secondary metabolites
ppun01120
Microbial metabolism in diverse environments
ppun01200
Carbon metabolism
ppun01212
Fatty acid metabolism
Module
ppun_M00087
beta-Oxidation
ppun_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
PP4_37140 (fadB)
00650 Butanoate metabolism
PP4_37140 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
PP4_37140 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PP4_37140 (fadB)
00310 Lysine degradation
PP4_37140 (fadB)
00380 Tryptophan metabolism
PP4_37140 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
PP4_37140 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
PP4_37140 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
PP4_37140 (fadB)
00930 Caprolactam degradation
PP4_37140 (fadB)
Enzymes [BR:
ppun01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
PP4_37140 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
PP4_37140 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
PP4_37140 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
PP4_37140 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
BAN55567
LinkDB
All DBs
Position
complement(4221487..4223634)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFSAFEDLEVPTVAAINGIALGGGLE
MCLAADYRVMSTSAKIGLPEVKLGIYPGFGGTVRLPRLIGSDNAVEWIASGKENRAEDAL
KVGAVDAVVAPELLQAGALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGNRVDKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVK
EDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVFDAAVLDVLKPIVFEQREVTDEDIINWMMVPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgagctc
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgcctgaccctgaacgagctt
cgccaggccgtcgatgccatcaaggccgacgcctcggtcaagggcgttatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cccgaggccgaactggtcgccggcaacctggaagccaaccgcatcttcagcgccttcgaa
gacctcgaagtgccgaccgttgcggccatcaacggcatcgccctgggcggcggcctggag
atgtgcctggccgccgactaccgggtcatgtccaccagcgccaagatcggcctgccagaa
gtcaagctgggcatctaccccggctttggcggcaccgtacgcctgccgcgcctgatcggt
tcggacaacgctgtcgagtggatcgcttccggcaaggaaaaccgtgccgaagacgccctg
aaagtgggtgccgtcgacgccgtggtcgcccctgaattgctgcaggccggtgccctggac
ctgatcaagcgcgccatcagtggcgagctggactacaaggccaagcgccagcccaagctg
gaaaagctcaagctcaatgccatcgagcagatgatggccttcgagaccgccaagggcttc
gttgccggccaggccggcccgaactacccggccccggtcgaagccatcaagaccatccag
aaagccgccaacttcggccgcgacaaggccttggaagtcgaagccgcaggctttgccaag
ctggccaagacgtcggttgccgaaagcctgatcggtctgttcctgaatgaccaggaactc
aagcgcaaggccaaggcgcatgacgagatcgcccatgacgtgaagcaggccgccgtgctc
ggcgccggcatcatgggtggcggcatcgcttaccagtcggcggtcaaaggcaccccgatc
ctgatgaaggatatccgcgaggaagccattcagctgggcctgaacgaagcctccaagctg
ctcggcaaccgcgtcgacaagggtcgcctgaccccggccaagatggccgaggcgctcaac
gccattcgcccgaccctgtcctatggcgatttcgccaatgtcgacatcgtcgtcgaagcc
gtggtagagaacccgaaagtgaagcaggccgtgctggccgaggtggaaggccaggtgaaa
gaggatgcgatccttgcgtccaacacctcgaccatctccatcaacctgctggcaaaagcg
ctcaagcgcccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagtgaagtggcggtcgccaccaccgtggcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgattgcccgggctttttggtc
aaccgcgtgctgttcccgtattttggcggctttgccaagctggtcagtgccggtgtcgac
ttcgtgcgcatcgacaaggtcatggaaaaattcggctggccgatgggcccagcctacctg
atggacgtggtcggcatcgacaccggccaccacgggcgtgacgtgatggccgaaggcttc
ccggaccgcatgaaggacgagcgccgctcggccgtcgacgcgctgtacgaggcgaaccgc
ctgggccagaagaacggcaagggcttctatgcctacgaaaccgacaagcgcggcaagccg
aagaaagtcttcgacgccgccgtgctggacgtgctcaagccaatcgtgttcgaacagcgc
gaagtcaccgacgaagacatcatcaactggatgatggtcccgctgtgcctggagaccgtg
cgctgcctggaagacggcattgtcgaaaccgccgccgaagccgacatgggcctggtgtat
ggcattggtttccctcccttccgcggtggtgcgctgcgttacatcgactcgatcggtgtg
gccgaattcgtcgccctggccgatcagtacgccgatctggggccgctgtaccacccgact
gcgaagctgcgtgaaatggccaagaacggccagcgcttcttcaactga
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