Podarcis raffonei (Aeolian wall lizard): 128419035
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Entry
128419035 CDS
T09310
Symbol
PRDM9
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Pathway
praf00310
Lysine degradation
praf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
128419035 (PRDM9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
praf03000
]
128419035 (PRDM9)
03036 Chromosome and associated proteins [BR:
praf03036
]
128419035 (PRDM9)
Enzymes [BR:
praf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
128419035 (PRDM9)
Transcription factors [BR:
praf03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
128419035 (PRDM9)
Chromosome and associated proteins [BR:
praf03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
128419035 (PRDM9)
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
128419035 (PRDM9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
PRDM2_PR
SET
SSXRD
KRAB
Motif
Other DBs
NCBI-GeneID:
128419035
NCBI-ProteinID:
XP_053255253
LinkDB
All DBs
Position
8:10844649..10861065
Genome browser
AA seq
1123 aa
AA seq
DB search
MASGAEMSTGTEAQERGQKMPAGAGAQGMWEEMLRDDECQGQEGRGSSSMGEAGGMRREA
SDKNDTPGKRATEAEWPVPSGGDLMENDPRDLRGEPLEKGASGTPPPSDSLLTKSVEAGR
TGSGSPKNSCLDRGSTERVKKPSHKKRGQRPKAEDTFKGLAIYFPKEQWAEMGEWEKIRY
KNMKENYEFMTQLGLPTPKPTFMYHARQPPKTTNESSESDEEWTPKSMVKSFRTPCNLSS
WKEEKQKKYPVDQNKQINTMGLTSKDQEHIKKTDKNTCADVHTTDIAAESKTDIEKKALS
GKTKNRKRDQEKEVSTYSLRKRERKTYMEINEPNDDDYLFCEYCLLFFIDECSVHGSPVF
IKDTAVEVGLEERATLTLPPGLRIGPSGIPKAGFGVWNEGEILPPGIHFGPYEGKITEEE
EAANSGYSWLITRGQNCYVYIDGKDETNSNWMRYVNCARNEEEQNLVAFQYHGKIYYRAC
KIILIHSELLVWYGEEYGKELGIKWGSRWKSRKGLCNFCLHRHMKWKHSGYGIQPEVPEN
VLAEKSLFKITNSASNRTMLQHQVPSCVDKDKDEETLFLKDINKETQSRIQFSRCNESGA
TLKQLSHPAQQLCIGERPRSFRNCERSFSYSSVLVTHMQTHTREKPYSCGQCGKSFSRSG
HLAIHKRMHTGEKPYSCGECGKSFSWSGHLAVHKRTHTGEKPYSCGECGKSFSCSGHLAV
HKRTHTGEKPYSCGECGKSFNRSEHLAVHKRTHTGEKPYSCGECGKSFSCSGHLAVHKRT
HTGEKPYSCGECGKSFSQSGDLARHKQTHTGEKPYSCGECGKSFSCSGNLAAHTRTHTGE
KPYSCGECGKSFSCSGNLAKHKRMHTGEKPYSCGQCRKSFSCSGNLAVHTRTHTGEKPYS
CGECGKSFSCSGDLAKHKRMHTGEKPYSCGECGESFNRSEHLAVHKRTHTGEKPYSCGEC
GKSFSCSGHLAVHKRTHTGEKPYSCGECGKSFSCSGNLAAHTRTHTGEKPYSCGECGKSF
SCSGDLAKHKRMHTGEKPYSCGQCGKSFSCSGNLAVHTRTHTGEKPYSCGECGKSFSQSG
DLARHKRMHTGEKPYSCGECGKSFSCSGNLARHKQTHTGEKPP
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atggcatctggagctgagatgtccactgggacagaagcccaggaaagagggcagaaaatg
ccagctggggcaggagcccagggaatgtgggaagagatgctcagggatgatgaatgccaa
gggcaggagggcagaggcagttccagcatgggagaagcgggagggatgaggagagaggca
tctgacaaaaacgataccccagggaagagggcaactgaggctgaatggcctgttcccagt
gggggagatctcatggagaatgatcccagggatctgagaggagagcccttggagaaagga
gccagtgggacaccacctccttctgattctcttcttacaaaaagtgttgaggcggggagg
acggggtcaggtagcccaaaaaatagttgcttagacaggggttctacagagagggtcaaa
aagccaagccataagaaaagggggcagaggcccaaggctgaagatacttttaaagggctg
gccatctacttccctaaagagcaatgggctgaaatgggagaatgggaaaaaattcgttat
aagaatatgaaagagaactatgagtttatgactcaattaggtcttcctacacctaaacca
acatttatgtatcatgcacggcaacctcccaaaactacaaatgagtcctctgagtccgat
gaggaatggacaccaaaatctatggtaaaatcttttaggacaccatgtaacctgagtagc
tggaaagaggaaaagcaaaaaaagtaccctgttgatcaaaataagcaaataaacactatg
ggacttacttccaaagaccaagaacatataaagaaaactgacaaaaatacatgtgcagat
gttcatactacagacattgcagcagaatcgaagactgatattgagaagaaagctttgtcg
gggaaaacaaagaataggaaaagagatcaggagaaagaagttagtacatatagtttgcgg
aagagggagagaaaaacatatatggaaataaatgagccaaatgatgatgattacttgttt
tgtgaatactgcctgctattctttattgatgaatgttcagttcatggttctccagttttc
atcaaggatacagcagtagaagtaggactggaagagagggccaccctcactttacctcca
ggtttgagaattggcccttcaggtatccccaaagctggctttggagtctggaatgaagga
gaaattctgcctccaggaattcattttgggccctacgaagggaaaatcacagaggaagaa
gaagcagccaacagtggttattcttggctgattactagagggcaaaactgctatgtttac
attgatggaaaggatgaaactaattccaactggatgaggtatgttaactgtgcccggaat
gaggaagagcaaaatcttgttgccttccagtatcatgggaaaatctactacagagcatgt
aaaataatccttattcattctgagcttctggtttggtatggagaagaatatggaaaggag
cttggcatcaagtggggctctagatggaaatcaagaaaaggcttatgcaatttctgcctt
cacagacatatgaaatggaagcattcaggatatggaatacagcctgaagtacctgaaaat
gtactagcagagaaatctctattcaaaatcacaaatagtgcttcaaacagaactatgctg
cagcaccaagtgccaagttgtgttgacaaagataaagatgaggagacactgtttttaaaa
gatataaacaaagagacacagagtagaattcagttttctagatgcaatgaaagtggggca
actttaaagcagttgtcacacccagcccaacaattatgtataggagagaggccacgttca
tttagaaactgtgagagaagcttcagctactcatcagtgctggtcactcacatgcaaaca
cacacaagagagaagccatattcatgtggacagtgtgggaaaagcttcagccgttcagga
cacctggccatccacaagcgaatgcacacaggagagaagccatattcatgtggagagtgt
gggaaaagcttcagctggtcaggacacctggctgtccacaagcgaacacacacaggagag
aagccatattcatgtggagagtgtgggaaaagcttcagctgttcaggacacctggctgtc
cacaagcgaacacacacaggagagaagccatattcatgtggagagtgtgggaaaagcttc
aaccggtcagaacacctggctgtccacaagcgaacacacacaggagagaagccatattca
tgtggagagtgtgggaaaagcttcagctgttcaggacacctggctgtccacaagcgaaca
cacacaggagagaagccatattcatgtggagagtgtgggaaaagcttcagccagtcagga
gacctggccaggcacaagcaaacacacacaggagagaagccatattcatgtggagagtgt
gggaaaagcttcagctgttcaggaaacctggctgcccacacgcgaacgcacacaggagag
aagccatattcatgtggagagtgtgggaaaagcttcagctgttcaggaaacctggccaag
cacaagcgaatgcacacaggagagaagccatattcatgtggacagtgtcggaaaagcttc
agctgttcaggaaacctggctgtccacacgcgaactcacacaggagagaagccatattca
tgtggagagtgtgggaaaagcttcagctgttcaggagacctggccaagcacaagcgaatg
cacacaggagagaagccatattcatgtggagagtgtggggaaagcttcaaccggtcagaa
cacctggctgtccacaagcgaacacacacaggagagaagccatattcatgtggagagtgt
gggaaaagcttcagctgttcaggacacctggctgtccacaagcgaacacacacaggagag
aagccatattcatgtggagagtgtgggaaaagcttcagctgttcaggaaacctggctgcc
cacacgcgaacgcacacaggagagaagccatattcatgtggagagtgtgggaaaagcttc
agctgttcaggagacctggccaagcacaagcgaatgcacacaggagagaagccatattca
tgtggacagtgtgggaaaagcttcagctgttcaggaaacctggctgtccacacgcgaact
cacacaggagagaagccatattcatgtggagagtgtgggaaaagcttcagccagtcagga
gacctggccaggcacaagcgaatgcacacaggagagaagccatattcatgtggagagtgt
gggaaaagcttcagctgttcaggaaacctggccaggcacaagcaaactcacacaggagag
aagccaccttag
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integrated database retrieval system
