Pieris rapae (cabbage white): 110992822
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Entry
110992822 CDS
T05162
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110992822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
110992822
Enzymes [BR:
prap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110992822
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110992822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
DUF6179
Motif
Other DBs
NCBI-GeneID:
110992822
NCBI-ProteinID:
XP_022114483
LinkDB
All DBs
Position
4:5225646..5231225
Genome browser
AA seq
1648 aa
AA seq
DB search
MNVDINLSSAIKGLVSVDPESVQFLTFSDEDVKELSVVKITNSQSFDSLGNATRGGLYDP
LMGPIRDRNDECATCGNILLNCPGHFGHIELPLVVANPLYIKNMYILFRASCLKCYKIQL
DDKLRFILKLQLDLLDAGHVTAALDLENFVIDMKDKSASPDKPHKTIRKYQKLLKKSDPV
TKTFQNKNIDKLRGKVINHYFKAINTLKTCIFCRNRLIKVTTSDNKIMYNTSAESGTKGG
SIKIMMPDELQQICASVAENNEDVLMYCLPILKYSNVKPITDIFFMKVLPVLPINVRPCN
VLRGEIMENPQSKVYQGILKRSLAARVILQIMKSTDQTKTIGQLNTELRQAYESSPGASP
PEKLHTCWQELQRNVNEILNCEGAGVVSQGLKQVIEKKQGVIRMHMMGKRVNFAARSVIT
PDPNLDIDEIGIPDAFATKLTYPVPVTEWNVHELRKMVINGPNVHPGAEKIEIRNGRTIR
IPPDCINKRKSLAKRLLTPEEYKKSDLKIVHRHLINGDVLILNRQPSLHKPSMMAHRARI
LKGEKTIRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVRKQYLVPKDGTPLS
GLIQDHVISGVRMSLRGTFFSKADYQQLVFQALSSHRGEIKLLPPTILKPVLLWSGKQVL
STIIINSIPKGKPYLSLVGKAKIGDKAWQKVPARTWIAGGTPLENNDLSEAQVVIRNGEL
LCGVLDKTHYGATPYGLVHCMYELYGGDSSTALLSSFSKVFTFYLQWIGFTLGVKDILVV
EEANKKRDEIVQLVRQIGKVAAVKATDLPADVDDNVLKETIGELMAKDPKFRANLDRQYK
NMLDSYTNNINTVCLSQGLLEKFPSNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKRP
PLMISGRSLPSFPPYEVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSG
YLQRCLIKHLEGLSVAYDHTVRDADGSVIQFAFGEDGLDVLKCQYLKRSQLPFLDINSNA
VVGKSVIKKLKEDDDIKVVAKAQKSLKKWKKRHGNPTDREKSNGFALFSVQTKKDIKLDE
MPTDRTRDPYYWELESMWRSLDEDEKAQYTRKRCPDPIPCKMSPEYKFGVINEQLDGLIQ
NYLKNRNKNIFNEYTDNDKFGEVMNAKYLASMAAPGEPVGLLAAQSIGEPSTQMTLNTFH
FAGRGDMNVTLGIPRLREILMTASVNVKTPNMDIPFYGSISGLTQKAEKLRKKMNRVTVS
DVLEKIDIECEIVTQPDRKLKTIMRFFFLPYNQYKTQYSVKPSQIIKHMQKKFFTEMFSF
IRKQAKGNSGIAWSTEKKKKKKLSSDDEDDDLQDEPVKKSVNIDDSSDEEAPNDDDDNTE
VKLRNKRAEEQEYEDPESDEGEKSDEEVENDDESVKEIDDTESISVADSKAMADVVERIS
HATNYIFDTKNHEWCELTVLFPISFLRVDLTQALREAATKSVIYEIKNIKRAITNTEKGV
LFLKTEGINIVQMFKYNDLLDLNKLYSNDIHAIANTYGIEAANKVIIKEIQNVFNVYGIE
VDPRHLSLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLIFLKEAVLNAKVDNLRS
ASSCLMLGQPCRSGTGAFSLQLCSKVIS
NT seq
4947 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtggatataaatttatcttcggccataaaggggctagtgtcagttgaccctgaa
tctgttcaatttcttacattctctgatgaggatgttaaagaacttagtgttgttaaaata
accaactctcagtcttttgattccttaggcaatgccacacgaggaggtctctatgatcct
ttgatgggaccaataagagatagaaacgatgaatgtgctacttgtggaaacattttgtta
aattgccctggccattttggacatattgagctgcctttagtagtagctaatccactttat
attaaaaatatgtatatcttattccgtgcatcttgcttgaaatgctacaaaattcagcta
gatgataaactgagatttattcttaagttacaattagatcttctggatgctggacatgtt
acagctgctttggatcttgaaaattttgtgattgatatgaaagataagtctgcctctcca
gataaacctcacaaaacaattcgaaaatatcagaaactgcttaaaaagtcagacccagta
acaaagacctttcaaaataagaatattgataaactaagaggtaaagtaataaatcattat
ttcaaagcaataaatactttaaaaacttgtattttctgtagaaatcgattaatcaaagtt
acaacttctgataataaaataatgtataatacaagtgcagaaagtggcactaaaggtggc
agtataaaaataatgatgccagatgaattgcaacaaatttgtgcttcagtagcagaaaat
aatgaagatgttttgatgtactgtctacctattttaaaatattcaaacgttaaaccaata
actgatatatttttcatgaaagttttgccagttttaccaatcaatgttagaccttgtaat
gttttacggggtgaaattatggaaaaccctcaaagcaaagtttatcaaggtattttaaaa
aggtcacttgcagctcgagttatccttcaaataatgaaatcaacagatcaaaccaaaacc
attggtcaattaaatacagagttaagacaggcttatgaatcttcacctggggcatctcca
cctgagaaattacacacctgttggcaagaacttcagagaaatgtaaatgaaatattaaat
tgtgaaggtgcaggggttgtgtctcaaggattaaaacaggttatagaaaaaaaacagggg
gtcataagaatgcatatgatgggtaaaagagtaaattttgcagctcgctctgtcattact
cctgatcctaacttagatattgatgaaattggtatccctgatgcttttgctacaaaatta
acttatccagtaccagttactgaatggaatgttcatgagttgagaaaaatggtgattaat
ggtcctaatgtacatccaggtgctgaaaaaattgagattagaaatggcagaacaatacga
atcccaccagattgtataaataaaagaaaaagtcttgctaaacggttactcactccagaa
gaatataagaagagtgacctgaaaattgttcacaggcatttaatcaatggtgatgtatta
attttgaaccgtcaaccatctctacataaacctagtatgatggcacatagggctagaata
ctaaaaggagaaaagaccattcgattacattatgctaattgtaaatcctataatgctgat
tttgatggtgatgaaatgaatgcacattttccacaaaatgaaattgcaaggagtgaagcg
tataatattatgtcagtccgaaagcaatatttagtaccaaaagatggtacaccactaagt
ggtttgattcaagatcatgtgatttctggggtgcggatgtctttacgtggcacatttttt
tctaaggcagattatcaacaattagtgtttcaagctttatctagccatagaggtgaaata
aaactactacctcccaccattttaaaaccagtattattatggtcagggaaacaggttctt
tcaaccataataataaatagcattccaaagggtaaaccatatttatcattagtagggaaa
gcaaaaatcggtgataaggcttggcagaaggtgccagctagaacttggattgcaggaggt
acaccacttgaaaacaatgatttgtcagaggcacaagtagttattagaaatggagaactt
ttatgtggtgttttagataaaactcattatggtgcaactccatatggtttagttcactgt
atgtatgagttatatggtggggattcctctacagcattactcagttccttctcaaaagtt
tttaccttctacctacagtggattgggtttactttgggtgtcaaagatattttagttgtg
gaagaagctaataaaaagagagatgaaatagtgcaacttgtaaggcaaattggtaaagta
gctgcagtaaaagccactgatctgccagcagatgttgatgacaatgtacttaaagaaaca
attggagaattgatggctaaagatcccaagtttcgtgcaaatcttgatagacaatataaa
aatatgcttgattcatacactaataatattaacactgtttgtttatctcaaggtttatta
gaaaaatttccatcgaataatcttcaattgatggtacagtctggtgccaaaggttccact
gttaatactatgcagatttcttgtttgcttgggcaaattgagttggaaggtaaaaggcct
ccattgatgatatctggtagatctttgcccagttttcctccttatgaagtttcaccaaga
gcgggaggatttatagatggtcggtttatgacaggcattcaacctcaggaattttttttc
cattgtatggctgggcgtgaaggtcttattgacacggctgtgaaaactagtcgttcaggc
tatttacaaaggtgccttataaaacatttagaaggtttgagtgttgcgtatgatcatact
gtgcgtgacgctgatggaagtgtgatacaatttgcatttggtgaagatggactagatgta
ttaaaatgccaatatctaaaacgcagccaattacctttccttgacataaattccaatgca
gtagttggcaaatcagttattaaaaaactcaaggaagatgatgacattaaagtagttgcc
aaagctcaaaaatctctaaaaaagtggaagaaaagacatggaaatcctacagatagagaa
aaatccaacgggtttgcacttttttctgttcagaccaagaaagatatcaaactggacgaa
atgccgactgatcgaacacgtgacccctattattgggaattagaatctatgtggagatca
ttagatgaagatgagaaggcacagtacaccagaaaacgttgtcctgacccaattccatgt
aaaatgtctccagaatataaatttggtgttataaatgaacaattagatggtctaattcaa
aactacttaaaaaaccgtaataaaaacatatttaacgagtacactgacaatgataaattc
ggcgaagttatgaatgcaaaatatctagcatctatggcagcaccaggagaacctgttggc
ttattagctgctcaatctattggagaaccttcaacgcagatgacattgaatactttccat
tttgccggtagaggagacatgaacgtcacactaggtattccgcgtctaagagaaattctt
atgactgcttccgtaaacgttaaaacccctaatatggatataccattctacggtagtata
tcaggcttgacccaaaaagcagaaaagctacggaagaaaatgaatcgtgttaccgtatcc
gatgtactggaaaaaatagatatagaatgcgaaatcgttacgcagccagacagaaaattg
aagacaattatgcgttttttctttcttccatacaatcaatataaaactcagtactcggta
aaaccgtcgcaaataataaagcacatgcaaaaaaaatttttcacagaaatgttttcgttt
atccgtaaacaagccaagggtaatagtggaattgcttggtctactgaaaaaaagaaaaaa
aagaagctttctagtgatgatgaagatgatgaccttcaggatgaaccagtaaagaaatct
gttaatattgatgacagttctgatgaagaggccccaaatgatgatgatgataatacagag
gtaaagcttcgaaataagcgagctgaagaacaagaatatgaagatccagaatcggatgaa
ggggagaaatctgatgaagaagttgaaaatgacgacgaaagtgttaaagaaattgatgat
acagaaagcatctctgttgcggacagtaaagcaatggctgacgttgtggagcgaattagt
catgcgaccaattatatattcgatactaaaaaccacgaatggtgtgaactaactgttctc
tttcctatatcattccttcgagttgatcttactcaagcgttgcgtgaagctgctacaaaa
tcggtcatttacgaaatcaagaacattaagcgagcaattactaatactgaaaaaggagtt
ttatttttaaagactgaagggataaatatcgtgcaaatgttcaaatacaatgatttgcta
gatttgaataaactctacagcaatgacatacatgcaattgccaatacatacggaatagag
gcagcgaataaagttataattaaagaaatccaaaacgtatttaatgtatatggtattgaa
gttgatcctcgacatttgtcactgatagcagattatatgacttacaatggaatctttgag
cccatgagtcgtaaaggcatggaggcatcatcatcacccttacagcaaatgtcatttgaa
tcgtcgctaatatttttaaaggaggcagttctaaatgctaaagtagataatttgcgctca
gcgtctagctgtcttatgttaggacagccgtgccgcagtggaacaggtgcttttagttta
caactttgtagtaaagtaataagttaa
DBGET
integrated database retrieval system
