Pieris rapae (cabbage white): 123689485
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Entry
123689485 CDS
T05162
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
prap
Pieris rapae (cabbage white)
Pathway
prap03020
RNA polymerase
prap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123689485
09124 Replication and repair
03420 Nucleotide excision repair
123689485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prap03021
]
123689485
03400 DNA repair and recombination proteins [BR:
prap03400
]
123689485
Enzymes [BR:
prap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123689485
Transcription machinery [BR:
prap03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123689485
DNA repair and recombination proteins [BR:
prap03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123689485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
123689485
NCBI-ProteinID:
XP_045485705
LinkDB
All DBs
Position
1:5927460..5938374
Genome browser
AA seq
1835 aa
AA seq
DB search
MVTTVDSKAPVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMESGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKKGSGHGGCGHYQPS
IRRQGLDLTAEXANEDTQEKKIIITAERVWEILKQITDEESFILGMDPKFARPDWMIVTV
LPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQTGAAAHVLADNIRMLQF
HVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPN
LRIDQVGVPRSIAQNLTFPELVTPFNIGRMQELVRRGNAQYPGAKYIVRDNGERIDLRFH
PKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPY
NADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRD
VFLTKEQVMNLLMFLPTWDGKIPQPCILKPTPLWTGKQIFTLIIPGNVNMIRTHSTHPDE
EDDGPYKWISPGDTKVIVDHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNI
QTVINNWLLLEGHSIGIGDTIADPQTYQEIKNTIVKAKDDVIEVIQKAHNMELEPTPGNT
LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN
VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV
KTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTIKLS
NKAFEKKFKFDPTNERYLKRIFNEDIIKELTESGYVIGDLESEWDQLGKDRSVLREIFPS
GESKVVLPCNFKRMIWNVQKIFHINKRSTTDLSPIKVIQSVRDLLKKCVIVAGEDRLSKQ
ANENATLLFQCLVRSTLCAKLVSEDYRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAA
QSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE
KAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFDPTKISPWLL
RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDN
DEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIVITEQGEFKAI
AEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGL
YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPM
RGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGLGVGGGMYFGVGTPSMTPL
MTPWSNQNTPGYGSSVWSPGPVGSSMTPGPSFSPSGASDASGMSPSRSSPWSPQPGSSGA
LGAPFSPYASPSYSPTIPIYAAPSPSLIPTYPHYSPTNASYSPTSLFYSPSPAYSPNSPG
YSPNSPGYSPTSPRYSPNSPGYSPTSPRYSPTSPRYSPTSPIYSPNSPVYTSGAHSYSSS
SPNYTPRSLAYSPTNHSYSPTSHDDYSPTSRNYSPSSSIYFLTSSNYSSTSPTVSKGSPR
YPANSLQYYLTITHSRSSHYTVSSPNYSPSSPNYSSPGCSLSSSKYSPTSPTLTPASNNY
SPSSPAYSPASSGPSTYSPTSPASPTSPNYEEDED
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggtgactacggttgattcgaaggcgcctgtgcgccaagtaaaacgagtgcagtttggt
atattatccccagatgaaattcgtcgtatgtctgtcacggaaggggggatacgcttccca
gaaaccatggagagtggacgaccaaagcttggaggtcttatggacccacgacaaggggtg
atagatagaacatctagatgtcagacttgtgcgggaaatatgactgagtgtcctggtcat
tttgggcacatagatttggctaagccagtattccacataggattcatcacaaaaaccata
aaaattttgagatgtgtctgtttttattgttccaaactccttgtcagtccgacaaatccc
aaaataaaagaagtagtaatgaaatctaaagggcaaccacgtaaacgattgacttatgtt
tatgacttatgtaaaggaaaaaatatttgtgagggtggtgaagatatggatattggtaaa
gaaggtgaagagggtaaaaaaggctctggtcatggtggttgtggtcactatcagccttca
attagacgacaaggtctagatctcacagctgaanntgcaaatgaagatactcaagagaaa
aaaataattataactgcagaacgggtctgggaaatattgaaacaaataacagatgaagag
tccttcatactgggtatggacccaaagtttgctagacctgattggatgatagtaacagtt
ttacctgtaccaccattgtctgttagacctgcggttgtcatgtttgggtctgccaaaaat
caagatgatttgacccataaactggctgatattataaaagcaaataatgaactgatgagg
aatgaacaaactggtgctgccgctcatgttttagccgacaatattagaatgttacagttc
catgttgccacatttgtagataatgatatgcctggtatgccaaaagctatgcagaaatct
ggaaagccacttaaagccattaaagctcgtctgaaaggaaaagagggaagaataagagga
aatcttatggggaagcgtgttgatttttcagccagaactgtcattacaccagatcccaat
cttcgtattgaccaagtaggggttccaaggtctatagctcaaaatttgacattcccggaa
ctagtgacaccatttaacattggtaggatgcaggaattagtgaggagaggaaatgcgcaa
tatcctggtgccaaatatatagttcgtgacaatggagaacgtattgatttgagattccac
cccaaaccttctgatcttcatctacaatatggttataaagttgaacgtcatttgcgtgac
gacgatctggttatatttaataggcagccgacacttcacaaaatgagtatgatgggtcac
agagttaaggtcttaccatggtcaacattccgtatgaatttgagctgtacttcgccatac
aacgccgattttgatggtgatgaaatgaatttgcatgtaccgcagtcaatggagacacgg
gctgaagttgaaaacattcatattactcccagacagattatcactcctcaagcaaataaa
cctgtcatgggtattgtacaggacacactcacagctgttagaaaaatgactaaacgagat
gtgtttctgacaaaagaacaggtaatgaatcttcttatgtttttgcctacatgggatggc
aaaattccccaaccttgcatcctgaagccaacaccactctggactggcaaacaaatattt
accctgatcattcctggtaatgtgaatatgataagaacacattctacacatccagatgaa
gaagatgatggcccctataaatggatatcaccgggagacacaaaagtcattgtggaccat
ggagaactattaatgggtatattatgtaaaaaatcacttggtgcctctgctggatcactt
ctgcatatttgtatgttggaattaggacacgaaacggcaggacggttttatggtaatatt
caaacggtaatcaacaactggctccttctagaaggtcactcaattggtattggagatact
attgctgatccgcaaacctaccaagaaattaaaaatactattgtgaaagccaaagatgat
gtaatagaggtgatacagaaagcccacaatatggaattggagccgactcctggtaatact
ctgaggcaaaccttcgaaaatcaagtaaatcgtatattgaatgacgctcgtgacaaaact
ggaggttcagctaaaaaatctctaactgaatacaacaatctcaaagctatggtggtctct
ggttcaaaagggtctaacattaacatctctcaggttatcgcttgtgtgggtcaacagaac
gtggaaggtaaacgtattccattcggtttccgtaaaaggacattgccccatttcatcaaa
gatgattatggtcccgaatctaggggctttgtagaaaattcttatcttgctggtttgaca
ccttcggagttttactttcacgctatgggaggtcgtgagggtctcattgatactgctgta
aaaactgctgaaactggatacattcaacgacgtctcataaaggctatggagtctgttatg
gttaattatgatggcactgttcgaaactctgtcggtcaacttatccagttacgttatggg
gaagatggtttagctggagaaactgtcgagttccaaaacctaccaacaattaagctatca
aataaagcttttgaaaagaagtttaagtttgatcccacaaatgaaagatacttgaagaga
atcttcaatgaggatatcattaaagaactcacagaatcaggatatgttattggagattta
gaaagcgagtgggatcaactaggaaaggacagatcggtgttgagagaaattttcccaagt
ggagaatcaaaagttgtgttaccctgtaacttcaagagaatgatttggaatgtgcaaaaa
attttccatattaataagagatcgactactgatttaagtccaataaaagttattcaatct
gttagggatttattaaagaaatgtgtgattgtggctggagaggatcgcctttcgaaacaa
gccaatgaaaatgcgaccttactctttcaatgccttgtgaggtcaactttgtgcgctaag
cttgtatcagaagattatcggctctcaacggaagctttcgagtggttaataggagaaatc
gaaactcgtttccaacaagctcaagcaaacccaggtgaaatggtaggagccctagctgcc
caatctctgggagaacctgctacacagatgacattgaacaccttccactttgctggagtc
tcctccaaaaacgtaactctcggtgtgcctcgtttgaaggaaattattaatatatccaag
aagcctaaagctccctctctcacagtatttctaactggtggagccgctcgagatgcagaa
aaagctaaaaacgtcttgtgtcgtttggaacacacaactttacgcaaagtaaccgcaaac
actgctatatactacgatcccgacccacagaatactgttatcggtgaagatcaagagttt
gtcaatgtttactatgaaatgcctgactttgatcctactaaaatatctccatggctgttg
cgtattgagttggaccgtaagagaatgaccgacaagaaacttactatggaacaaattgca
gaaaaaatcaacgcgggcttcggagatgatctcaactgtatatttaatgacgataatgcc
gaaaaacttgttcttcgtataagaattatgaacaatgaagagagtaaattccaagacaat
gacgaggaaactgttgataagatggaagatgatatgttcctgagatgtattgaagcaaat
atgttgtctgacatgactttacaaggcattgaagcaatagcaaaagtgtacatgcatttg
ccacaaactgaagctaagaaacgtatagtcattacggaacagggagaattcaaagcaatt
gcagagtggctgttggaaacggatggaacatctttgatgaaagtactttccgagcgagat
gtagacccgataagaaccttcagtaacgatatctgtgagatattccaagttttaggtatc
gaggcggttcgaaaatccgttgagaaagaaatgaatgctgtattgcagttctatggtcta
tatgtaaactaccgccacttggctttgctttgtgacgtaatgactgctaaaggtcacctt
atggccattactcgtcacggcattaacaggcaagatactggcgcgttgatgagatgctcc
ttcgaagaaactgtagacgtattgctcgacgcggcaagccacgctgaagtagaccctatg
agaggcgtgtctgagaatattatcatgggacaactccctagaatgggaacaggatgtttt
gatttactactggatgctgagaaatgtaagcacggtatggaaatgggtggtttgggcgta
ggcctaggagtaggtggcggaatgtacttcggagtcggcacaccatccatgactccgctt
atgactccatggtcgaaccagaatactcctggctatggtagcagtgtttggtctcctgga
ccggtgggtagcagtatgactccgggtccatcattctcaccatcaggtgcatctgacgct
tcgggaatgtcaccatcgcgtagcagcccttggtcgccacagcccggctcttctggtgct
cttggagccccgttctcaccttacgcatcgccgtcgtactctcccacaattcctatttat
gctgctccgtcccccagtctcatcccaacttacccacactactcgccgacaaacgcatcc
tattcgccgacgagtctgttttattcgccgagtccagcttactcgccgaattctccgggt
tactcgccgaattctccgggttactcgccgacttcacccagatactctccgaattctccg
ggttactcgccaacttcacccagatactctccgacttcacccagatactctccgacatca
cccatatactctccgaatagtccagtatacacttccggggcacacagttactcctcgtca
tcaccaaattacacgcccagatcactagcatattctcccacgaatcattcttattctccg
acctcacatgacgactattcaccgacatcacgcaattactcgccttcatcgtctatatat
tttttgacgtcttcaaactattcgtcgacatcgccaaccgtatcgaaaggtagtcctaga
tatccggcgaacagtcttcagtactatctaaccataactcattccagaagctcacactac
acagtatcctcaccaaattactcgccgtcttcaccaaattattcatctcctggatgttct
ctgtcctcctctaaatattccccaacatcgccaacattgacgccagcctcaaataattat
tcgccatcatccccggcctactctcctgcttctagtggaccatcaacttactcgccaact
tctcctgcatcccctacttcacctaattatgaagaagatgaagattga
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integrated database retrieval system
