Poecilia reticulata (guppy): 103471362
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Entry
103471362 CDS
T05149
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pret
Poecilia reticulata (guppy)
Pathway
pret03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pret00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103471362 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pret03019
]
103471362 (clp1)
Enzymes [BR:
pret01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
103471362 (clp1)
Messenger RNA biogenesis [BR:
pret03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103471362 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
TniB
AAA_22
AAA_16
AAA_18
Motif
Other DBs
NCBI-GeneID:
103471362
NCBI-ProteinID:
XP_008418531
UniProt:
A0A3P9PWS3
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All DBs
Position
LG10:complement(23362628..23365931)
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AA seq
441 aa
AA seq
DB search
MAAEGVEKTSEDASSSGKVCTRFDLEKETELRFEVEAGEAADQVEMELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRETRDEKIREYFYGFRALSFFPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVDDGDEDARKSIVESPVCGFIVVTNVDTQAQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagggtgtggaaaagaccagtgaagatgcatcgtcttcggggaaggtgtgc
accaggttcgacctggagaaggagaccgagcttcgcttcgaggtggaggccggagaggcc
gcggatcaggtggagatggagctcctgacggggatggcagaggtgtttggctctgagctg
aaccgtaacaagaagtacaccttcggaccaggctccaagatcgctgttttcacttggcag
ggctgcagtgtgaatctgtatggcaagccagaggtggcctatgtgtccaaggatactcct
atgctgctctacctgaacacccatgctgccctggaacagatgagaaaacaagctgagcgg
gaaaatgagagggggcccagggtgatggtagtgggacctacagacgtggggaagtccaca
gtgtgccggctgcttctcagctatgctgtgagagttggaaggagacctacgctggtggaa
ctggatgttggacagagtggggtttctgttccagggacagtatcagctctgtgcattgag
cgtcctgcagacgtggaggagggcttctctgtccaggctcctttagtttatcactttggc
tctacgactcctggaaccaacatcaaactttacaacaagctgacatcgtgcctggccgaa
gtgttctctcaacgctgtgaggtaaacaggaaggccagcgttggcggctgcatcatcaac
acctgtggctgggtgaagggttctgggtaccaggcgctggtccactgtgcctccaccttc
caggtggacgtggtgcttgtgctggaccatgagaggctctacaatgaactcaaacgggac
ctgccgcactttgtgcgcgttgtgctgctgccaaagtccggaggagtggtggagcgctcc
aaggagtgccggcgggagactcgggatgaaaagatccgcgagtacttctacggcttccgc
gcgctgtccttcttccctttctcttttgaagtgcgattctcggatgttcgcatctacaag
atcggggcgccgtccatcccggactcctgcctgccactgggaatgtctcaggacgacacg
cagctgaaactggtgccggtgactccagggagggacctgacgtatcacgtgctgagtgtg
agcagcgtcgacgacggagacgaagacgccaggaagagcatcgtggagagccccgtctgc
ggattcattgtggtcacaaacgttgacactcaggcgcaggtgatgaaagtgctgtcacct
gcacccagaccactgcccagacacacgctgctcatcatggacatccgctttatggacatg
aaatga
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