Pseudomonas rhizosphaerae: LT40_04255
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Entry
LT40_04255 CDS
T03339
Name
(GenBank) diguanylate cyclase
KO
K21024
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
LT40_04255
Enzymes [BR:
prh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
LT40_04255
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
AIS16663
UniProt:
A0A089YJU7
LinkDB
All DBs
Position
complement(920063..922132)
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AA seq
689 aa
AA seq
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MKLEVRNSLSVKLLRVVLLSALVVGMVLSCAQIVFDGYKTRQAISADAERILAMFRDPST
QALYSLDREMGMQVIEGLFQDDAVRLASIGHPDEAMLAERSRPLQNLSSRWLTDRILGQE
RSFSTRLIGRGPYSEYYGDLHITLDTATYGEDFIVSSVIIFVSGTLRALALGLLLYLIYH
WLLTKPLSRIIEHLLQINPDRPGEYQLPLPRGHEHNELGLWVNTANQLLASIERNTQLRH
EAEDSMLHMARHDVLTGLANRMQLQQQLDKVLLDAHRLQRRVAVLCVGLDDFKGINEQFG
YQTGDQLLRALADRLRVHSGRFGTLARLGGDQFALVQADIEQPYEAAELAQRILDDLDAA
FALDAHAIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKVRSRNRYQFYIASVDTEMR
RRRELEKDLREALARNQLHLVYQPQISYRDHRIVGVEALLRWQHPEHGLVPPDQFIPLAE
QNRSIIAIGEWVLNQACSQLREWHDQGFSGLRMAVNLSTVQLHHNELPRVVSNILQMYRL
PPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI
DKSFVQDVLSDEDDATIVRAIIQLGKSLNMQVIAEGVETLEQEAYIVAQGCHEGQGYLYS
KPLAARELTALLKQSERSRPSLAPTPTRT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
ttgaagctggaagtcaggaacagcttgtccgtcaagttgcttcgcgtggtgctgctgtcg
gcgctcgtcgtgggcatggtactgagctgcgcacagatcgtcttcgatggctacaagacc
cgccaggccatctccgccgacgccgagcggatcctggccatgttccgcgatccctcgacc
caagcgctctacagcctggatcgggaaatgggcatgcaggtgatcgaaggcttgttccag
gacgacgcggtgcgtctggcctccatcggtcatcccgacgaagccatgctggccgaacgt
tcgcgaccgctgcagaacctgagcagtcgctggctgaccgatcgcatcctgggccaggag
cgcagcttcagtacgcgcctgatcggccgtgggccctacagcgagtactacggcgacctg
cacatcaccctggacaccgccacctacggtgaggatttcatcgtcagctcggtgatcatc
ttcgtctccggcaccttgcgcgccctggccctgggcctgttgctgtacctgatctatcac
tggctgctgaccaagccgttgtcgcggatcatcgagcatctgctgcagatcaaccccgac
cgacccggcgagtaccagttgccgttgccccgcggccatgaacacaacgaactgggcctg
tgggtgaataccgccaaccagctcctggcgtccatcgagcgcaacacccagctgcgccac
gaagccgaagacagcatgctgcacatggcccggcacgacgtgttgacgggcctggccaac
cgcatgcagttgcaacagcaactggacaaggtcctgctcgatgcgcaccgcctgcagcgt
cgggtggctgtgctgtgcgtcggcctcgacgacttcaagggcatcaacgaacagttcggc
taccagaccggcgaccagctgctgcgggcgctggccgaccgcttgcgggttcacagcggc
aggttcggcaccctggcacgcctgggtggcgaccagtttgccctggtccaggcagacatc
gaacagccctacgaagcggccgaactggcccagcgcatcctcgacgacctggatgccgcc
ttcgcgctcgacgcgcatgcgatccgcctgcgcgccaccatcggcatcaccctgttcccc
gaagacggcgacagcactgaaaagctgctgcaaaaagccgagcagaccatgaccctggcc
aaggttcgctcgcgcaaccgctaccagttctacatcgccagcgtcgacaccgagatgcgt
cgccgtcgtgagctggaaaaggacctgcgcgaagccttggcacgcaaccagctgcacctg
gtgtaccagccgcagatcagctatcgcgaccaccggatcgttggcgtcgaggcgctgctg
cgctggcagcaccccgaacacggcttggtgccgcccgaccagttcattccgctggccgag
cagaaccgcagcatcatcgccatcggtgagtgggtcctcaaccaggcctgcagccaactg
cgcgaatggcacgaccagggcttcagcggcctgcgcatggcggtcaacctgtccacggtg
cagttgcaccacaacgaactgccccgcgtagtcagcaacatcctgcaaatgtaccgcctg
ccgccccgcagcctggaactggaggtcaccgagaccggcctgatggaggacatcagcacc
gcagcgcaacacctgctgagcctgcgccgctcgggggcgctgatcgccatcgacgacttc
ggtactggctattcatccctcagttacctgaagtcactgcccctggacaagatcaagatc
gacaagagtttcgtgcaggacgtgctgagcgacgaggatgacgcgaccatcgtccgggcg
atcatccagctgggcaagagcctgaacatgcaggtcatcgccgaaggcgtggaaacgctg
gaacaggaagcgtacatcgtcgcccagggctgccatgaaggtcagggctacctctacagc
aagcccctggccgcccgcgaactgaccgctttgctcaagcagtccgaacgcagccgcccc
agcctggccccaacaccgacgcggacctag
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