Paraburkholderia sabiae: QEN71_10895
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Entry
QEN71_10895 CDS
T09203
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
psaa
Paraburkholderia sabiae
Pathway
psaa02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
psaa00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
QEN71_10895 (pdeR)
Enzymes [BR:
psaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
QEN71_10895 (pdeR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
WJZ76282
LinkDB
All DBs
Position
1:2424716..2426719
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AA seq
667 aa
AA seq
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MNDDQHDQVLFARFGTSSPCWRLSSDSNALELTPETEDDAATVAIALSGAQAAQIRRLTG
VTSHLTMDVRLYGEALRLHLVGKKLNGSTWAGTASAYEDTESVARDLVHGLSFAEQVVSE
VNSVVVIVDRAGRIQRFNRLAEELTGMKEEDVIGRNVWALFMSSEAGAASSQNISGFFQE
GVAYEVERRVRTVHGERLFLFRNKFVMSGSGVDEQFLICSGTDITKERNAQERLSELANT
DSLTGLPNRNAIHDKTRAAIESAAPGDALGILFLDLDNFKKVNDHYGHVFGDRLIQDVSS
AVRECLADEDTLARLGGDEFIVLSPVASVASMEAMAQRILERLRTPFSLGLVEVYTGCSI
GIAMFPEHGDSLEALIRAADTAMYVAKDDGKRTYRVFSPEMNRKVAEYMWLDTNLRRGLE
EGQLTLHYQPKLSLSTGTVYGVEALVRWNSPERGQIMPAAFIRYAEESGLIGPLGRWVMQ
TAAEQAAQWKAHGLSLRVAINVSARQLVDTAVVAHFNEALERAQLDPCLLDIELTESCLI
EDEAAAIDLITQFRDLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVSSINADRKSQ
ALVRSMVAVAQALQLQVVAEGIETEAEELFMKGLGVEYVQGYLYGKPMPAADFERWLHDR
QKIRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgatcaacacgatcaggtgcttttcgcccgattcggaacgagcagtccctgc
tggcgtctgtcgagcgacagcaatgcgctcgaactgacgcccgaaacggaagacgacgcg
gccacggtcgcgatcgcgctgtccggcgcgcaagccgcgcagatccgccgcctcacgggc
gtcacctcgcatctgacgatggacgtgcgcctgtacggcgaagcgctgcgtctgcacctc
gtcggcaagaagctcaatggcagcacctgggccggcacggcttccgcctacgaagacacg
gaatccgttgcgcgcgatctcgtgcatggactgtcgttcgccgaacaggtcgtgtcggaa
gtgaattccgttgtcgtgatcgtcgaccgggccggccgcatccagcgcttcaaccggctc
gccgaagaactcacgggcatgaaggaagaagacgtgatcgggcgcaatgtgtgggcgctc
ttcatgtcgtcggaagcgggcgcggcgtcgagccagaatatctccggcttcttccaggaa
ggcgtcgcatatgaagtcgagcgccgcgtgcgcaccgtgcatggcgagcggctctttctc
tttcgcaacaagttcgtgatgagcggcagcggcgtcgacgagcagtttctgatctgctcg
ggcacggacatcacgaaagaacgcaacgcgcaggagcgtctgtccgaactcgcgaatacc
gattccctgacgggcctgcccaaccgcaacgcgattcacgacaagacgcgcgcggccatc
gagagcgccgcgccgggcgacgccctcggcattctgtttctcgatctcgacaacttcaag
aaggtcaacgatcactacgggcacgtattcggcgaccggctgatccaggacgtgtcgtcg
gccgtgcgcgaatgcctcgccgatgaggacacgctcgcgcgcctcggcggcgacgagttc
atcgtgctgtcgcccgtcgcgagtgtcgcctcgatggaagcgatggcgcaacgcattctg
gagcggctgcgcacgccgttcagtctcgggctggtcgaggtgtacaccggctgctcgatc
ggcatcgcgatgttccccgaacacggcgacagcctcgaagcgctgatccgtgccgccgac
acggccatgtacgtcgccaaggacgacggcaagcgcacgtatcgtgtgttctcgccggag
atgaaccgcaaggtcgccgagtacatgtggctcgacacgaacctgcgacgtgggctcgaa
gaaggtcagctgacgctgcactatcagccgaagctgtcgctctcgacgggcaccgtgtac
ggcgtcgaggcgctggtgcgctggaattcgccggagcgcgggcagatcatgcccgccgcg
ttcatccgttatgccgaggaatcggggctcatcgggccgctcggccgctgggtcatgcag
acggcagccgaacaggctgcgcaatggaaggcacacggattgtcgctgcgcgtcgcgatc
aacgtgtcggcgcggcagctggtggatacggccgtcgtcgcgcatttcaacgaggcgctg
gagcgcgcgcaactcgatccttgcctgctcgatatcgaattgacggaaagctgtctgatc
gaagacgaagcggctgccatcgacctgatcacgcaattccgcgatctcggcgcgcaggtt
catctcgacgatttcggcacgggctattcgtcgctgtcgcagctggggcgcattcctctc
gacgtcatcaagctggaccgcagcttcgtgagttcgatcaacgcggaccggaaatctcag
gcgctggtgcgctcgatggtggccgtcgcgcaggcgctgcaacttcaggtggtggcggaa
gggatcgagactgaggcagaagaactgttcatgaaggggctgggcgtcgaatacgtgcag
ggctacctgtacggcaaaccgatgcccgctgccgatttcgagcgctggctgcatgacagg
cagaagatccggttgatcgcctga
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