Mollisia scopiformis: LY89DRAFT_643546
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Entry
LY89DRAFT_643546 CDS
T04865
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
psco
Mollisia scopiformis
Pathway
psco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LY89DRAFT_643546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psco03400
]
LY89DRAFT_643546
DNA repair and recombination proteins [BR:
psco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
LY89DRAFT_643546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
28821525
NCBI-ProteinID:
XP_018073329
JGI:
643546
UniProt:
A0A194XFR9
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MVKQENATPARPPPASLKKASSSSQQRSIQSFFSKAPSSTPNSSNTSSNGVLKANDTSEK
VNAMAKPKASVKKPAFRKSAVKSMTPVPSSDTRELSSSQENKNGGVPEEVEESGLPSPST
PSKRVQVFNGMALTPSRKAKKAVSYVESDDEDDEEDVFEPARNSRKRGGSKPKVVESDSE
DDFVGGLDGAVDDDDEMDDFVVDDDSDAPSKPSKKRKRPTSTATSRKRPEIAPPTPFEKD
DDEEDEDEDLDIPGPSTAQQWKYDPENTAPLQPRSANISKTPASNKKPIKEKACKTEPEK
RYPWLASLQDMDRNPIGHPDYDPRTLYIPPNAWAKFSPFEKQYWEIKQKFWDTVVFFKKG
KFYELYEIDATIGHQLFDLKLTDRVNMRMVGVPEMSLDHWANQFVAKGYKIARVDQCESA
LGKEMRETEEKTSKGKKDKIIRRELACVLTRGTLVEGSMLQDDMATYCVAIKESTVDELP
AFGIAFVDTATGQFFLSDFVDDLDLTKFETFIAQTRPQELLLEKGCVSTKALRILKNNTS
PTTIWNHFKPGKEFWPAEIARRELDCSGYFVSQEAGGAEVWPEKLEEARDKDLVMSATGA
LVQYLRTLKLERDLLTQGNFTWYSPIQKGTTLVLDGQTLINLEIFANTFDGSSDGTLFTL
LNRCVTPFGKRLFRQWVCHPLADAERINERLDAVDMLNKDRSLSDQFTASMTRMPDLERL
ISRIHAGSCRPEDFVKVIDGFGQIEYTMDLLSAFQGGDGIVDRLIASMPDLKEPLEFWKT
AFDHEKAREEKLLVPASGVEEEFDDSQDKIKQLEDDLKDLLKRKRKDLGGSAKIQFKNIG
KEVYQIEVPTAIKAPNGWQVMSTAAGFKRYYFPELKGLIRQLQEAQETHGQIMKQVAGRL
YARFDQDYMTWLQAVKVISQLDCLISLAAASAALGEPSCRPTFVESERSVVEFEELRHPC
MLPNVTDFIPNDVKLGGDVPNIDLLTGANAAGKSTILRMTCVAVIMAQIGCYVPCVSATM
TPCDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATSRSLVILDELGRGTSSYDGVAV
AQSVLHHVASHIGCIGFFATHYHSIATEFAGHPEVAPKRMQIHVDDENRQVTFLYKLEDG
VAEGSFGMHCAAMCGIPNKVIDRAEVAAREWEHTSRLKESLEKARSGCYIPLGVQSDVSW
ILKEALAEDGIEERGLNVLMKAIANL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagcaagagaacgccacaccggcacgaccgccgcctgcttccttgaagaaagcc
tcaagctcgtcacagcaacggtcaatccagagcttcttctcgaaggcaccatccagtact
ccaaactcgtcgaacacatcgtcgaacggcgtcttgaaagccaatgatacttcggaaaag
gtcaacgcgatggccaaacctaaagcatctgtgaagaaacctgcgttcaggaaatctgca
gtgaagagcatgacgcccgttccaagcagtgacacgagggaactgtcaagctctcaagag
aataaaaacggaggagtcccggaagaggtagaagaatctgggttaccttcgccctcgaca
ccttctaagagagtccaggttttcaacggcatggcattaacaccgtcacgaaaggccaag
aaagctgttagctacgtggagtctgacgacgaagatgacgaagaggatgttttcgaacct
gccagaaactcaagaaagcgagggggatcaaagccaaaggtcgtggaatcagactctgag
gatgattttgttggtggtctagatggagcagtagatgatgatgatgagatggacgatttc
gtggtcgacgacgattctgatgctccatcgaagccatcaaagaagaggaagcgcccaaca
tccaccgcgacgtccagaaagcgtcccgaaatcgcgcctcccacacctttcgagaaggat
gatgacgaggaagatgaggacgaggacttggacatcccaggtccgtccacagctcaacag
tggaagtacgatcccgaaaatactgcaccacttcaaccgagatctgccaatatttcaaag
actccggcatcaaataagaagccgattaaggagaaagcttgcaagaccgaacctgagaag
cgctatccatggttggctagtttacaagacatggatcgcaatcctattggacatccagac
tatgatccaaggactctctatatccctcccaacgcttgggctaagttctcccccttcgag
aagcagtattgggagatcaagcaaaagttctgggatactgtcgtcttcttcaagaagggc
aaattctatgagctttacgaaatcgatgccacgattggccatcaattatttgacctcaag
cttactgacagagttaatatgcgcatggttggagtaccagagatgtctttggatcattgg
gccaaccaattcgtagcaaagggctacaagatcgctagagttgaccaatgcgagtctgca
cttggtaaagaaatgcgcgagactgaagagaagactagcaaaggcaagaaagacaaaatc
atccgtcgagagctggcatgcgttcttacgagaggcacgttggttgaaggcagcatgctt
caggatgatatggccacctactgcgttgctatcaaggagtctaccgtggatgagctgcca
gcttttggtattgctttcgtcgatactgcgactggacaattcttcctctctgatttcgtt
gatgacttggacttgacgaagttcgagactttcattgcccagacccgaccccaagaactt
ctcttggagaagggatgcgtatccacaaaggctctacggatcttgaagaataataccagt
ccaactacgatctggaatcacttcaaacctggtaaagaattttggccagctgaaattgct
cgtcgagagcttgactgcagcggatacttcgtttcacaggaagctggaggagcggaagtg
tggccagagaagctggaagaagccagagacaaggacctcgttatgtctgccacgggtgca
ttggttcaatacctcagaacactcaagctggaacgagatctgctgacccagggtaacttc
acttggtacagcccgatccagaagggtaccacgctcgtcctggatggtcagacgttgatt
aatttggaaatcttcgccaacacatttgacggaagctccgacggaacactatttactctt
ctcaaccgctgtgtaacaccgtttggtaaacgactgttccgacagtgggtttgccatccg
ttggcagacgctgaacgaatcaacgagcgtttggatgctgtggatatgctcaacaaagat
cgtagcctcagcgatcagtttactgcttcgatgactcggatgccagatcttgagcgactc
atttcccgtatacacgcaggatcctgcagaccggaagactttgtcaaagtcatcgatggt
tttgggcaaatagagtacactatggatctgctctctgccttccagggaggagatggaatt
gttgatcgcctcattgcttctatgccagatctcaaggagccattggaattctggaagacg
gcatttgaccatgaaaaggcaagggaggagaagcttctcgtaccagcaagcggtgttgag
gaggagtttgacgacagccaggacaaaattaagcagctcgaagatgacttgaaggatctc
ctcaaacgtaagcgaaaagacttgggcggctcagcaaagatccaatttaagaacattgga
aaggaggtgtatcagattgaggtgccgacagcaatcaaagcacccaatggctggcaggtc
atgtcaacggctgcaggcttcaaacggtattacttcccagaactgaaaggtctcatccgg
caactccaggaggcacaagagactcatggtcaaattatgaagcaagtagctggtcgactc
tacgctcgctttgaccaagattacatgacttggttgcaagccgtcaaggtaatctcacag
cttgattgcctcatcagtcttgctgctgcgtctgcagctcttggagagccaagctgccgt
ccaacctttgttgaatctgaaagaagtgttgtcgagttcgaggagcttcgccacccttgc
atgctaccaaatgttactgacttcattccgaatgatgtcaagcttggtggtgatgtcccg
aatattgatttgttgactggcgcaaacgcagctggaaagtcaacaattctcagaatgact
tgcgtagctgtcattatggcacagattggctgctatgtgccttgtgtatctgcgaccatg
actccatgtgatcgaatcatgtctcgtctaggagctaatgataacatcttcgctgcacag
agtaccttctttgttgaactttccgagaccaagaagattctctccgaggctacatcacgc
tcacttgtcattctcgatgagctgggccgtggaacaagctcatatgatggagtggctgtt
gctcaatctgtccttcatcacgtcgcttcgcatattggctgtattggtttcttcgccact
cattatcactctattgcaacagagtttgcgggccatccagaagtcgcaccgaagcgaatg
caaattcacgtcgatgacgagaatcgtcaagttacattcttgtacaagctcgaggacggt
gtggcagaaggcagtttcggtatgcattgcgcagccatgtgtggcattcccaataaggtc
atcgaccgtgctgaagtggctgctcgcgaatgggaacacacgagcaggctgaaggagagt
ttggaaaaagcgagaagcggatgttatatcccgcttggtgtacaaagtgacgtgagctgg
attctcaaggaagctctggctgaggatggaattgaagagaggggactaaatgtgctcatg
aaagctattgcgaatttgtaa
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