Pseudodesulfovibrio sediminis: PSDVSF_19770
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Entry
PSDVSF_19770 CDS
T08380
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psef03009
]
PSDVSF_19770 (rimO)
Enzymes [BR:
psef01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PSDVSF_19770 (rimO)
Ribosome biogenesis [BR:
psef03009
]
Prokaryotic type
ribosomal protein modification factors
PSDVSF_19770 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
Motif
Other DBs
NCBI-ProteinID:
BCS88735
LinkDB
All DBs
Position
complement(2069180..2070358)
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AA seq
392 aa
AA seq
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MLINTCGFIQPAVEESITTILEAIKDAAEAPGTKPLIGVAGCLVSRYGQDLKDGLPEVDL
WLNTEEIELWPGMAALALSTQVEDDAPRNLSTAPSYAYLKVSEGCSHDCRFCTIPSIRGP
HKSWTVDYLVDEARQLAEKVPEIIVVGQDSTAYGSDLGDGHDLPTLFKGLAGIPALKWLR
IMYLYPAGLTESLLTLLRETGEPFLPYFDIPLQHAHPDVLASMGRPFARNPKKVVDRVRS
FFPEAALRTTFIVGYPGETDEHFEALLDFVKEARFHHLGVFPYWPEDGTPAAAMDNQVPD
EIKTARRDTLMELQAAISAEIMEGYVGETLPVLIEKASDEWPGLYIGRTWFQAPEVDGVT
YVSAPPDVELALGSIVEVEIEKADTYDLSGLV
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
gtgcttatcaatacctgtggtttcatccagcctgcggtggaggaatccattaccaccata
ctggaagccatcaaggacgcagccgaggccccggggacaaaaccgctcataggcgtggcc
ggatgtctggtttcccgttacggccaggatctcaaggacggcctgcccgaggtggacctc
tggctcaacacggaagagatagagctgtggcccggcatggccgctctcgccctgtccaca
caggtggaggatgacgcgccgcgcaatctctccacggcgccgtcctatgcctacctcaag
gtgtccgaggggtgttcccatgactgtcggttctgtaccatcccgtccattcgcgggcca
cacaaaagctggaccgtggactatctggtcgacgaggcccggcagctcgccgaaaaggtc
ccggagatcatcgtggtcggtcaggattccacggcctatggttccgaccttggcgacggc
cacgatctgcccacgcttttcaaggggctggccggaatcccggcgctcaagtggctgcgg
atcatgtatctctatccggccggactgaccgaatctctgctcacgcttctcagggagacc
ggcgagccgtttctgccgtacttcgatattccgctccagcacgcgcatccggacgtgctg
gcgagcatggggcgtccttttgccaggaatccgaaaaaggtggttgatcgcgttcgctcc
tttttccctgaggcggccctgcgcacgacctttatcgtgggctatccgggcgagacggat
gaacatttcgaagcgcttctggatttcgtgaaagaggcccgcttccaccatctcggcgtg
tttccgtactggccggaagacggcaccccggccgcggccatggacaatcaggtgcctgac
gagatcaagacggcccgtcgggataccctgatggaactgcaggctgccatcagcgccgaa
ataatggaaggctatgtcggggaaacactgcccgtcctcattgagaaggcatctgatgag
tggcccggtctgtatatcggccggacctggtttcaggcccctgaagtggatggggtgacc
tatgtgagcgcgccgcccgatgtcgagctggcccttggttccattgtcgaagtggagatt
gaaaaggccgacacctacgacctgtccgggctcgtgtag
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