Pseudodesulfovibrio sediminis: PSDVSF_30220
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Entry
PSDVSF_30220 CDS
T08380
Symbol
hdrA
Name
(GenBank) heterodisulfide reductase subunit A
KO
K03388
heterodisulfide reductase subunit A2 [EC:
1.8.7.3
1.8.98.4
1.8.98.5
1.8.98.6
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00680
Methane metabolism
psef01100
Metabolic pathways
psef01120
Microbial metabolism in diverse environments
psef01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
PSDVSF_30220 (hdrA)
Enzymes [BR:
psef01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.7 With an iron-sulfur protein as acceptor
1.8.7.3 ferredoxin:CoB-CoM heterodisulfide reductase
PSDVSF_30220 (hdrA)
1.8.98 With other, known, physiological acceptors
1.8.98.4 coenzyme F420:CoB-CoM heterodisulfide,ferredoxin reductase
PSDVSF_30220 (hdrA)
1.8.98.5 H2:CoB-CoM heterodisulfide,ferredoxin reductase
PSDVSF_30220 (hdrA)
1.8.98.6 formate:CoB-CoM heterodisulfide,ferredoxin reductase
PSDVSF_30220 (hdrA)
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Gene cluster
GFIT
Motif
Pfam:
Fer4
Fer4_7
Fer4_6
Fer4_10
Fer4_9
Fer4_21
Fer4_2
Pyr_redox_2
Fer4_16
Fer4_8
FAD_oxidored
Fer4_3
DAO
Fer4_4
Fer4_22
FAD_binding_2
Fer4_17
NAD_binding_8
Pyr_redox_3
GIDA
HI0933_like
FMO-like
Pyr_redox
Fer4_15
AlaDh_PNT_C
NAD_binding_9
Thi4
Lycopene_cycl
Fer4_13
Motif
Other DBs
NCBI-ProteinID:
BCS89780
LinkDB
All DBs
Position
complement(3205803..3207782)
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AA seq
659 aa
AA seq
DB search
MKIGVFVCHCGSNIAGTVDVATVAKEARKMPDVAFASDTMYACSEPGQDGIIEAIKEHKL
DGVVVASCTPRMHEPTFRRTVERAGLNKYMFEMANIREHVSWIGKDTEANTAKAIDLVSM
AAAKLVHNKGLTPKSFSVNKRVMVVGGGVAGIQAALDCADGGLEVVLVEKTPSIGGKMSK
LDKTFPTVDCSSCILGPKMVDIAQHPNITLYTNAEIAEIQGYVGNFDITVNKKASYVDWE
ACTGCGLCTEKCPSKKSRDVFNEEIGTTTAINIPFPQAIPKKATIDAEFCRKLTNGKCGV
CEKICPTKAIRFEQQDEPVSESVGAIVVATGYDLFDHTRYGEYGGGRYADVITSMQYERL
LSASGPTGGHVKRPSDGKEPKNVVFIQCVGSRDKSVGRPYCSGFCCMYTAKQAILTKDHM
PESQSYVFYMDIRAPGKMYDEFTRRAMEEYGTKYIRGRVSMIYPMGDKYIVRGADTLMGT
QVEVEADMVVLAVGAEASKGAPQLAEKLRISYDSYGFYMESHPKLKPVETNTAGVYLAGC
CQGPKDIPTSVGQGSASAAKVLALFSKDQLESDPQISEVDIKRCIGCGKCIETCPFGAIE
EIDFRGMPKANVIETICQGCGICTSTCPQGAIQLQHFTDNQILAEVNVLCQQTLQQSFE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaagataggagtttttgtttgtcattgcggtagcaacattgcaggtaccgtcgatgtc
gcaacagtggccaaagaggcccgaaaaatgcctgatgtggcatttgcaagcgatacaatg
tacgcctgctcggaaccgggtcaggacggcatcatcgaagccatcaaggaacacaaactt
gacggcgtcgtcgttgcttcctgtacaccccgcatgcatgagcccactttccgccgcacg
gtggaaagggccggactgaataaatacatgtttgagatggccaacatccgcgaacatgtt
tcctggatcggcaaggacaccgaagccaataccgcaaaggccattgaccttgtgagtatg
gctgctgccaagctggttcacaacaagggtcttaccccgaagtccttcagcgtcaacaag
cgcgtcatggtcgtcggcggcggcgtcgccggtatccaggcggctctggactgtgcggac
ggcggactggaagtcgttctggtcgaaaagaccccctctatcggtggcaagatgtccaaa
ctggacaagaccttccccaccgttgactgttcgagctgtattctcggccccaagatggtc
gacatcgcccagcacccgaacatcaccttgtacacaaacgctgagatagccgaaattcag
ggctacgtcggcaactttgatattacagtgaacaagaaagcgtcgtacgtggattgggaa
gcctgcaccggttgcggtctgtgcacggaaaaatgtccctccaaaaaatcccgcgatgtg
ttcaacgaagaaatcggaacaaccacggcgatcaacattccgttcccgcaggccattccg
aaaaaagcaactattgatgcagaattctgccgcaagctgaccaatggcaaatgcggtgtc
tgtgaaaagatttgcccgaccaaggcaattcgcttcgagcagcaggacgagcccgtatcc
gaatctgtcggcgccatagtcgtcgccaccgggtacgatctcttcgaccatactcgctac
ggggagtacgggggcggccgctacgccgacgtcatcacatccatgcaatatgagcggctg
ctctcggcttccgggcccaccggcggacacgtcaagcgtccctccgatggcaaggaaccc
aagaacgtggtcttcatccaatgtgtcggctcacgcgacaagtccgttggacgtccctac
tgttccggtttctgctgcatgtatactgcaaagcaggccatcctgaccaaggaccacatg
cccgagtcccagtcctatgtattttacatggacatccgcgctccgggcaagatgtacgac
gagttcacccgtcgtgccatggaagaatacggcaccaagtatattcgcggccgtgtttcc
atgatctaccccatgggcgataaatacatcgtccgcggcgccgataccctcatgggtact
caggttgaagtcgaagccgatatggtggtcctggccgttggtgccgaggcatccaagggc
gcaccccagttggccgagaaactgcgcatctcctacgactcctatggattctacatggag
agccatcccaagctgaagcctgttgagacaaacaccgctggtgtgtatctcgccggttgt
tgccagggtcccaaggacattcccacttcagtcggtcaaggcagcgcctcggccgccaag
gtgctggcactcttctccaaggatcagctggaaagcgatccccagatctcggaagtcgac
atcaaacggtgtatcggctgcggcaagtgcattgagacatgtccgttcggcgctatcgaa
gagatagatttccgcggcatgcccaaggccaacgtcatcgagaccatttgccaggggtgt
ggtatctgcacctccacctgcccgcagggggccattcaattgcaacacttcaccgataat
cagattctcgcggaggtcaatgtcttatgtcagcagacgctgcaacagagcttcgaatag
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