Polypterus senegalus (gray bichir): 120525044
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Entry
120525044 CDS
T08668
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03020
RNA polymerase
psex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120525044 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
120525044 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120525044 (polr2a)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120525044 (polr2a)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120525044 (polr2a)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120525044 (polr2a)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120525044 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120525044
NCBI-ProteinID:
XP_039602930
LinkDB
All DBs
Position
3:complement(39202872..39235491)
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKILRCVCFFCSKLLVDAN
NPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQAEGDEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKF
ARPEWMIVTVLPVPPLSVRPAVVMQGCARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFTLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DTTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNVATLKPSNKAFEKKFKFDCTNERALRRTLQEEVVKDVMTNAHVQSELEKEFEKMRED
RQILRTIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLHPLRVVEGAQELSKRLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIEAKFSQAIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPHNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
SAHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNLPGISVAGPTGMF
YGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPSSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPGYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEED
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccactgcgcctcatcaagagagtgcag
tttggcatcatcagtccagatgaacttaaaaggatgtctgtcacagagggaggcatcaag
tacccagaaaccacagaaggaggtcgtcccaaacttgggggtttgatggacccccggcag
ggtgtaatagaaaggtcaggccgatgtcagacatgtgctggtaacatgacagagtgccca
ggacattttggacatattgagttggcgaagcctgtttttcatgttggcttcatcacgaag
atcatgaagattctgcgttgtgtctgtttcttctgttccaaactactggttgatgcaaat
aatcccaaaatcaaagacatcttgtcgaagtctaaaggtcagcctcgtaagcgcctcacc
catgtctatgacctttgcaaagggaaaaacatttgcgaaggtggagaagagatggataac
aagtttggtgtggaacaggcagagggagatgaagacatcacaaaagaaaagggtcatgga
ggctgtggacgttaccagccacgtatccgccgctctggcctggaactgtatgcagagtgg
aagcacgtgaatgaggattctcaggagaaaaagatcctacttagcccagagcgtgtccat
gaaatcttcaaacgcatttctgatgaggaggacatgattttgggaatggacccaaagttt
gcacgtccagaatggatgattgtgacagtccttcctgtcccacccttgtcagtcaggcct
gctgtagtaatgcaggggtgtgctcgtaatcaggatgatttgacacacaaacttgcagac
atcgtgaagatcaacaaccagttacgccgtaatgagcaaagtggtgctgctgctcatgtc
attgctgaggatgtcaaattattacaatttcacgtggctactatggttgacaatgagctt
cctggcctgccccgagccatgcagaagtctgggcgtccactaaaatcagtcaaacaacgg
ttaaagggaaaagagggtcgtgttagaggcaacttgatggggaagcgtgtggatttttct
gctcgaacagtcatcactccagatcctaacttgtccatcgaccaggttggggttccacgc
tccattgctgctaacatgactttcccagaaattgtcacacccttcaacattgacagattg
caggagcttgtcagaagaggtaacagccagtatccaggagcaaagtacatcatccgtgac
aatggagatagaatagatctccgatttcatccaaaaccaagtgacctccatttacagatt
ggatataaggttgagcgacacatgtgtgatggtgatattgtcatctttaatcgacagccc
acattgcacaaaatgtctatgatggggcacagggtgcgaattctgccctggtccaccttt
aggcttaatctcagtgtcacaaccccctacaatgccgactttgatggagacgaaatgaat
ctccatttgccacaatccttggaaacaagggcagaaattcaagagctagccatggtccct
agaatgatagtcacacctcagtccaacaggcctgtcatgggtattgtgcaagatacactt
acagcagtgcgcaagtttaccaagagagatgtcttcctagaaaggggtgaagtcatgaat
cttctaatgttcttgtctacatgggatgggaaagtgccccagcctgcaattctgaaaccc
cggccactttggactggcaagcaaatctttactctgatcatccctggccacatcaatgta
attcgaacacacagcactcacccagacgatgaggatagtggaccatacaaacacatttct
ccaggggacaccaaggtcattgtggaaaatggagagttgatcatgggcatcctatgcaag
aagtctctgggaacatctgctggctccttggttcatatctcctaccttgagatgggtcat
gacactactcgcctcttctatagcaacatccagacagttgttaacaactggctgctcatt
gagggtcattctattggtattggagactctattgctgatgctaaaacttacttggatatt
cagaacaccattaagaaagccaaacaagatgtaatagaggtcattgagaaggctcacaat
aatgagctggagcccactccaggtaacacactgcgtcagacatttgagaaccaggtgaac
aggatcctgaatgatgccagagataagactggctcttctgcacagaaatctttatctgaa
tataacaacttcaaatccatggtggtagctgggtccaagggctcaaaaattaacatttct
caggttattgctgtggtgggtcagcagaacgttgaaggaaaacggatcccatttggcttt
aagcaccgtacccttccacattttatcaaggatgactatgggccagagagcaggggcttt
gtggagaactcttatttggcaggacttactccaacggagtttttctttcacgctatgggt
ggaagagagggtttgattgatacagctgtcaaaactgctgagacaggctatatccagaga
cgacttatcaagtctatggagtctgtaatggtgaaatatgatgctacagtgcgtaactcc
atcaaccaagtagtgcagctgcgttatggtgaagatggactggctggtgaagcagtagag
ttccagaatgtggccacactgaagccatcaaacaaagcctttgaaaagaagttcaaattt
gactgcacaaatgagagagcacttcggcgcacactgcaggaggaagtggtcaaggatgta
atgaccaatgctcatgtgcagagtgaactagagaaggagtttgaaaagatgcgagaggac
cgacaaatcttgagaacaatcttccctactggagacagtaaagtggtgttgccttgtaat
ctagccaggatgatttggaatgcccagaagatttttcgcattaatactcgcacaccaact
gacttgcacccactcagagttgttgaaggtgctcaggaactaagtaagagacttgttatt
gtcaatggtgatgaccccttgagccggcaggcacaggagaatgccactctactgttcaat
attcacctacgctcaactctttgtagccgtcgaatgaccgaagagttccggctcagcaca
gaggcttttgattggctgcttggggagatagaagccaagttcagccaggccattgttcac
cctggggagatggtaggagctcttgctgctcagtcacttggagagcctgccacacagatg
actctgaacaccttccactatgctggtgtgtctgccaagaatgtcacgctgggagtgccc
cgtcttaaggagctgatcaacatttccaaacgacccaagactccctctttaactgtcttc
ctccttggacaggcagcgcgggatgcagagagagctaaggatatcctatgtcgtctggaa
catacaacattgaggaaggtaacagcaaacaccgctatttattacgacccaaaccctcac
aacaccgtagtggcagaggaccaggagtgggtgaatgtctattatgaaatgccggacttt
gatgtcactcgcatttcaccctggctgttgcgcatcgagcttgaccgcaagcatatgact
gacagaaagctgaccatggaacagattgctgaaaaaatcaacgcaggctttggagatgat
ttgaattgcatcttcaatgatgataatgcagagaagctggtactgcgcattcgaatcatg
aatagtgatgagaataaatttcaagaggatgaagaagtggttgacaagatggatgatgat
gtgttcctaaggtgcattgagtcaaatatgctgacagatatgactcttcaggggattgag
cagatcagcaaggtgtatatgcacttgcctcagacggacaacaagaaaaagattatcatc
acagaggatggcgagttcaaagctttgcaggaatggattttggagacagatggtgtagga
ctcatgagggtgctaagtgaaaaggatgtggaccctgtaaggacaacctccaatgacatt
gtggaaatttttacggttctgggtattgaagctgtacggaaagctctagagagagagctg
taccatgtcatctcctttgatgggtcctatgtcaactaccgacatttggcactgctttgt
gacaccatgacttgtcgaggccatttgatggccatcaccagacatggtgtgaataggcag
gacactgggcctctcatgaagtgttcctttgaagaaacggttgatgtgttgatggaagct
tcagctcatggagaatgcgatcccatgaagggtgtttcggagaacattatgctgggccag
ttagctcctgctgggacaggctgttttgatctactgttagacgcagagaaatgcaaatat
ggaatggagatccccaccaatttacctgggatcagtgttgcagggcctactggtatgttc
tatggctccgctcctagcccaatgggtggcatgtctccagccatgaccccctggaatcag
ggtgctacacctgcttatggagcttggtcaccaagtgttgggagcggcatgaccccagga
ggcgctggattttctcctagcgctgcatcagatgcaagtggctttagccctggttattct
ccagcttggtcacctactccagggtctcctggatcaccaggaccagcaagcccttacatt
ccttctcctggtggtgcaatgtccccaagctactctccaacctctccagcttatgaacca
cgttcaccaggtggctacacaccacagagccctggctattctcctacctcacccagttat
tctccaactagtcccagttattctccaactagtcccaactactctcctacttccccatcc
tactctcctacttccccatcctactctcctacttctccttcttactcgcccacttcacct
agctattcacccacctcaccttcctactctcctacctcacccagctactctcccacatcc
ccatcatactcgccaacgtctcccagctattctccaacatctcctagctactctccaacg
tcgcccagttacagccctacatctccatcttattctcccacttctccctcctactctcca
accagcccttcctacagtcccacttcaccttcctactcgcctacatctcccagctactcg
cctacatcccctagttattcgcctacatcccccaactacacccctacatctccttcttat
tcccctacttctccttcctactccccaacttctcccaactatactccaacatctcccaac
tacagccccacttccccatcttactctcctacatctccaagctattctcctacctcgccc
agttactcgccctccagtcctcgatatactccacaatctcccacctacaccccaagttct
ccaagctactctccaagcagtccaagttacagcccaaccagtcccaaatacaccccaacc
agcccctcctacagccccagctctccagaatacaccccaacgtcccccaagtacagtcct
acctctcccaaatactccccctcttctccgaagtattcacctacttctcctacttattcg
cctactacacctaaatacagccccactagtccaacatattccccaacatcccctggttac
acgcccacctcccctaaatattcccccacttcccccacttattcgcctacctctccaaag
tactccccaacatctccaacttattcgccgacaagccccaagggctccacctattctccc
acctctcctggctatagcccaacctctccaacgtacagccttacaagtccagcaatcagt
ccagacgacagtgatgaggaagactga
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integrated database retrieval system
