KEGG   Polypterus senegalus (gray bichir): 120532405
Entry
120532405         CDS       T08668                                 
Symbol
cdk7
Name
(RefSeq) cyclin-dependent kinase 7
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03022  Basal transcription factors
psex03420  Nucleotide excision repair
psex04110  Cell cycle
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120532405 (cdk7)
  09124 Replication and repair
   03420 Nucleotide excision repair
    120532405 (cdk7)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    120532405 (cdk7)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:psex01001]
    120532405 (cdk7)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psex03021]
    120532405 (cdk7)
   03019 Messenger RNA biogenesis [BR:psex03019]
    120532405 (cdk7)
   03400 DNA repair and recombination proteins [BR:psex03400]
    120532405 (cdk7)
Enzymes [BR:psex01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     120532405 (cdk7)
    2.7.11.23  [RNA-polymerase]-subunit kinase
     120532405 (cdk7)
Protein kinases [BR:psex01001]
 Serine/threonine kinases: CMGC group
  CDK family
   120532405 (cdk7)
Transcription machinery [BR:psex03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     120532405 (cdk7)
Messenger RNA biogenesis [BR:psex03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     120532405 (cdk7)
DNA repair and recombination proteins [BR:psex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     120532405 (cdk7)
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr Seadorna_VP7 ABC1 Kinase-like Haspin_kinase RIO1 APH FTA2
Other DBs
NCBI-GeneID: 120532405
NCBI-ProteinID: XP_039614302
LinkDB
Position
7:25700415..25732400
AA seq 345 aa
MAVDVKARSKRYEKLDFLGEGQFATVYKAKDKHTNTIVAIKKIKLGHRLEAKDGINRTAL
REIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDTSLVLTPANIKAYMLM
TLQGLEYMHQHWILHRDLKPNNLLLDENGVLKIADFGLAKAFGSPNRVYTHQVVTRWYRS
PELLFGARMYGVGVDMWAVGCILAELLLRVPFIPGDTDLDQLTRIFEALGTPTEEKWPGM
TSLPDYISFKMFPGTPLEHIFSAAGDDLLELLQGLFTYNPCTRTTATQALKKRYFSNRPG
PTPGPQLPRPNCSTEALKEQQNIHLGIKRKRDGTEQGTLAKKLVF
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggcggtggatgtaaaagcacgatctaaaagatacgaaaaacttgattttcttggggag
ggtcagtttgctacagtttataaagcaaaggacaaacatacaaatactatcgttgctatt
aagaagattaagcttggccatagattagaagctaaagatggtattaataggacagccctt
cgagaaatcaaacttcttcaagaattaagtcatccaaatatcattggtctccttgatgct
tttggacataaatctaatataagtcttgtttttgacttcatggaaacagatttagaggtc
ataatcaaagacacaagcctcgtattaactcctgctaatataaaagcatacatgttaatg
acgcttcaaggtcttgaatacatgcatcaacactggattttgcacagggacttaaaacct
aataatttgttacttgatgaaaacggagttttaaaaattgctgactttggtttggcaaaa
gctttcggaagtcccaacagggtctatactcatcaagttgtaacaagatggtacagatca
ccagagctcttgtttggtgcaagaatgtatggagttggtgtggacatgtgggcagtaggt
tgcatattggctgaattactccttagggtgccatttatacctggagacactgatctagat
cagttaacacgtatatttgaagcactgggcactccaacagaggagaagtggcctggtatg
actagtctgcctgactacatatcattcaaaatgtttcctggaacaccactggaacatata
tttagtgcagctggagatgatttactagagcttttgcagggactgttcacatataatccc
tgtaccagaacaacagcaactcaggcattgaagaaaaggtacttcagtaacagaccaggt
cctactccaggaccacagctaccaagaccaaattgttcaacagaagccctgaaagaacaa
caaaacattcacttgggtattaagagaaaacgagatggcactgagcaaggaacccttgct
aagaaactagttttctga

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