Polypterus senegalus (gray bichir): 120541341
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Entry
120541341 CDS
T08668
Symbol
polr3a
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03020
RNA polymerase
psex04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120541341 (polr3a)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
120541341 (polr3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120541341 (polr3a)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120541341 (polr3a)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
120541341 (polr3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3654
Motif
Other DBs
NCBI-GeneID:
120541341
NCBI-ProteinID:
XP_039628809
LinkDB
All DBs
Position
1:complement(260406342..260513374)
Genome browser
AA seq
1402 aa
AA seq
DB search
MVKDQFRETDVAKKISHICFGMKSAEQMRQQAHLQVVSKNLYSQDMGHTPLPHGVLDHRM
GTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAIIGVLQMICKTCSRIMLSKE
EKKQFLDYLKRPGLTYLQKRGLKKKISEKCRKKNTCSYCGSFNGPVKKCGLLKIIHEKYK
TNKKVVDPVVSDFLQSFDIAIEHNKEVESLLGRAQENLNPLVVLNLFKRIPSEDVPLLLM
NPEAGKPGDLILTRLLVPPLCIRPSVISDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIDFLRTLVRNGPEVHPGANF
IQQRHTNMKRFLKYGNREKMAQELKFGDTVERHMIDGDIVLFNRQPSLHKLSIMAHIARV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVCLPPPAILKPIRLWTGKQI
FSLILKPSETCPVKANLRTKGKQYCGKGEDLCNNDSFVVIQNSELMCGSMDKGTLGSGSK
NNIFYILLRDWGQMEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQGLLKAKQDLLHAG
YKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIM
ALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYS
GLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSATGDIIQF
IYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCSDEPALSKNELVLTAESIMNRSEFLC
CRDTYLQAFTDTGYEKYFKEIKKFIKIISEKIKKTRDKYGINDNGTTEPKVLYQLDRITP
TQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVP
RIKEIINASKNISTPIITANLDIDDEADFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI
LVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDIAVHGEAIVCVSPRENNKSSMYYV
LQSLKEDLPKIVVQGIPEVSRAVIHVDEQSGKEKFKLLVEGDNLRAVMATHGVKGTKTTS
NNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGL
AKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADK
VPNPPKRPLLFDNTEFHISLVT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaggatcagtttagggaaactgatgtggctaagaaaataagtcacatttgtttc
ggaatgaagtcggcggaacagatgagacaacaagcgcacttacaagttgtcagcaaaaac
ttgtacagtcaggatatgggtcacacacctttgccccatggtgtgctagaccatcgcatg
ggtacaagtgaaaaggacagaccatgtgaaacatgtggaaagaatcttgcagactgttta
ggacactatggttatattgatcttgaactgccctgttttcatgttggatactttaaagct
attataggagtgcttcagatgatatgcaaaacctgctctcgtatcatgctgtcaaaagaa
gaaaagaagcaatttttagattatttgaagagacctgggctgacatacttacagaaacgt
ggtttgaaaaagaagatttcagaaaagtgtcggaaaaaaaacacttgctcatactgtgga
agtttcaatggcccagtcaaaaagtgtggtttgctcaaaataattcatgagaaatacaag
acaaacaaaaaagttgttgatccagttgtatcagattttctacaatcttttgatattgca
atagagcacaacaaagaagtggaatcattgctgggcagagctcaggaaaaccttaaccca
ctggttgtacttaacttatttaagaggattccctcagaggatgttccgttacttttgatg
aacccagaagcgggtaagcctggtgatttgattctgacacggttgctagttcccccactg
tgtataagaccatctgtgattagtgacctgaaatcaggaaccaatgaggatgatttgaca
atgaaactgacagaaatcatcttcctcaatgatgtcattaaaaagcatcgaatgtctgga
gcgaagactcagatgatcatggaagactgggactttctccagctgcagtgtgctctttat
attaacagcgaactttcaggaatacctctcaatatggcacctaagaaatggactagaggc
tttgttcagaggctcaaaggaaaacaaggaagattcagaggaaatttatcaggaaaaaga
gtcgatttttctggaagaacagtcatttcacctgacccaaacttgcgtattgatgaagta
gcagtgcctgtacatgttgccaaaatattgacttatcctgaaaaggtgaacaaagctaac
attgattttttgcggacacttgtacgaaatggccccgaagttcatcctggagcaaatttc
attcagcaacgccatactaacatgaaaaggtttctgaaatacggtaatagagagaagatg
gcacaggaattaaaatttggagacacagtggaaagacacatgatagatggagatattgtt
ctctttaacaggcaaccttccctccacaaactcagcatcatggctcatattgcaagggtt
aagcctcatagaacatttcgatttaatgaatgtgtctgcacaccttataatgctgatttt
gatggagatgaaatgaatcttcatctaccgcaaactgaagaggcaaaagcagaagccctt
gttctcatggggactaaagctaatttagtaaccccacgaaatggagaaccacttattgct
gctattcaggatttccttacaggtgcttatcttttgactctgaaagatactttttttgat
agagcaaaggcctgtcaaattattgcttctattcttgtcggaaaagatgagaaaataaaa
gtttgccttcctcctccagctattttgaagccaataagattgtggacgggaaagcagata
ttcagtttaattcttaagcccagtgaaacatgtcctgtgaaagctaaccttcgaacaaag
ggcaaacaatactgtggcaaaggagaggacctctgcaacaatgattcttttgttgtaata
cagaacagtgagttgatgtgtggcagcatggacaaaggaactctgggttctggatccaag
aataacatcttctacattcttctgagagattggggacaaatggaagctgcagatgcaatg
tcccgcttagccagacttgcaccagtttttctttcaaatcgaggattttctattggcatt
ggagatgttacaccagggcaaggtttgctgaaggctaaacaagatcttttgcatgctgga
tataagaagtgtgatgaatacattgaggctcttaacacaggcaaattgcagcaacagcct
ggttgtacagctgaagaaactttagaggcacttatcctaaaggagctgtctgttatcaga
gaccatgctggaagtgcctgcctgagggagctggacaaaagcaatagccctttaattatg
gcgttatgtggctcaaaagggtcttttataaacatatcacaaatgattgcctgtgtcgga
caacaggcaatcagtggctctcgtgttcctgatgggtttgagaacagatccttgccacat
tttgagaaacattcaaagcttccagcagcaaagggctttgttgcaaatagtttctattct
ggcttgactcctactgaatttttcttccatactatggctggccgtgaaggtctggtggat
acagctgtaaaaacagcagaaacgggatacatgcagagacgtcttgtgaagtcacttgaa
gacctctgctctcagtatgaccttactgtgagaagtgcaacaggggatataattcagttt
atttatggaggagatgggttagatccagcagctatggagggaaaagatgaacctttagaa
tttaagagagtgctggataatataagagctgtatatagctgcagtgatgagccagccctc
agtaagaatgaactagttttaactgctgagtctataatgaacagaagtgagtttttgtgt
tgccgggacacatacttgcaggcattcactgatacaggttatgaaaaatattttaaggag
attaaaaagttcatcaaaataatttcagaaaagatcaagaaaacaagggacaagtatggc
attaatgacaatggaacgacagagccaaaggttctatatcagctggacaggattacacca
acacaacttgagaaattcttagagacatgtagagacaaatacatgagagcccaaatggag
cctggatctgccgttggtgcattatgtgcacagagcattggagaacctggaacacagatg
acactgaaaacgtttcactttgctggtgttgcttccatgaatatcactcttggtgtccct
cgaattaaagaaatcatcaatgcttccaaaaatatcagcacaccaattataacagctaat
ttggatattgatgatgaagcggattttgccaggcttgtgaaaggaagaatagaaaaaacc
ctccttggagagatttcagaatatattgaagaagtcttccttccagatgattgttttatt
cttgtaaagttgtctttggaaagaattcgcctattgaggttggaggtaaatgctgaaaca
gtgcggtattcaatatgcatttctaaattaagagtgaaacctggagacattgcagtgcat
ggagaagcaattgtttgtgtgtctccacgtgagaacaacaagagctctatgtattatgtc
ctacagtctctcaaagaagacttgccaaagattgtggtccaaggcataccagaggtttct
agggctgtcattcatgttgatgaacaaagtggaaaagaaaaatttaagttactggtggaa
ggagataatctccgtgcagtcatggcaactcatggtgtcaaaggaacaaaaacaacttca
aacaatacatatgaggttgagaagacattgggtattgaagctgcccgaacaaccattatc
aatgagattcaatatacaatggtgaatcatggaatgagcatagatcgaagacatgttatg
ttgcttgcagatcttatgtcgtacaagggtgaaattttaggaattacccgatttggttta
gcaaagatgaaggagagtgttcttatgcttgcttcttttgaaaaaactgctgatcattta
ttcgatgctgcatattttggacaaaaagactctgtatgtggtgtatctgaatgtataatt
atggggatcccaatgaatattggaacaggtctttttaagctgctgcataaggctgataag
gttccaaatcctccaaaaaggccactattgtttgataatactgaatttcacatttccctt
gtgacataa
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