Polypterus senegalus (gray bichir): 120542474
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Entry
120542474 CDS
T08668
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04010
MAPK signaling pathway
psex04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120542474
04020 Calcium signaling pathway
120542474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psex04040
]
120542474
Ion channels [BR:
psex04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120542474
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120542474
NCBI-ProteinID:
XP_039630914
LinkDB
All DBs
Position
13:122354919..122442960
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AA seq
2301 aa
AA seq
DB search
MINLSSDLHSEFAGADGIRTPVRKGFLKYMVEVKVYAYGNSTVLLIKVPTVSCAIMTDGD
RGTQIHPLGGKDARVPISESGDDEDGGSTDNPVQGSLGSGDSCGPERVADLGSDSEEQLQ
YPLLAPVVFFYLKQTTRPRSWCLRLVCNPWFEHVSMLVILLNCVTLGMYQPCEDIQCQSE
WCTILQAFDDFIFAFFAMEMVIKMVALGIFGQKCYLGDTWNRLDFFIVMAGMMEYSLDGH
NASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQL
WAGLLRNRCFLEDHFKMAYNVSFLSPYYKHDESDESPFICSSSRDNGMLRCQEVPKLREN
GIECLLSIEHIGRSSHTSDTSSKDGCINWNQYYNVCHPGEVNPHKGAINFDNIGYAWIAI
FQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENQ
LMKEQRARYLSNDSTLASFSEPGSCYEELLKYIGHLFRKVRRRAGRLYSNWQTKRRKKVN
PNDGSTGRSRRHKSKRKVHSIHHHHHHHHHHHYHISPRVNTETSDVAEMKPTRAGFQLML
PPSTANLQSPSSGVESVHSIYHADCHFQGPQIRYKSSATAGNGRLMAGVHGNMNYPTIVP
SVTTPESKGRKNCTHPMALNRAVGLFGLSDTFGKPYPVASEFGECRSSLSGLGLSMPCSS
PNAQTNLLSCELANCPYCAKILDKGECNTSDSESSHSDTDNVYEFHRDAENKYWQRKWRQ
SDKNSVTQYQELFCNKMKRIVESKYFNRGIMIAILINTLSMGIEYHEQPRELTDALEISN
IVFTSMFALEMLLKLLAFGLFGYIRNPYNIFDGIIVIISVWEIIGQSDGGLSVLRTFRLL
RVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLTTDNGD
TIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGNYVLFNL
LVAILVEGFQAEGDASRSDSGEDKMSGTFDEDDRLRDPAPADPKMYSLMMNGRMDSRTSA
APPLIMRTAATPMPTPTFTESRRGSSASIEPSSYDQRSLSSLRSSPCPPWGASSNWGSRR
SSWNSLGRAPSLKRKNQSGERESLLSGEGRCSSEEDDSEAGSAGATSLRQSLELPELLHV
PPLRHHSEYHSKAGHVPPDFLLHLDNQKDDCEEDIDDNFCFRVRRLIEAHKPEWCREHED
WALYMFSPQNEFRILCQKVIAHKMFDHIVLVFIFLNCIAIALERPEIDPHSTERMFLTVS
NYIFTAIFVAEMTVKVVALGFFSGENTYLQSSWNILDGVLVFVSVIDIFVSMASAGGAKI
LGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFIIFGILGVQL
FKGKFYYCEGIDTKNVTNKSDCQHMKYRWIRRKYNFDNLGQALMSLFVLSSKDGWVNIMY
DGLDAVAVDQQPIRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEAR
RXEEKRLRRLEKKRRKAQRRPYFADYSPARLYIHTLCTSQYLDLFITFIIGINVVTMSME
HYNQPQSLEEALKYCNYVFTMVFVIEAVLKLVAFGLRRFFKDRWNQLDLAIVLLSIMGIT
LEEIEINASLPINPTIIRIMRVLRIARVLKLLKLATGMRALLDTVVQALPQVGNLGLLFM
LLFFIYAALGVELFGKLVCNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDT
LRECSSEDRHCLSYLPLISPIYFVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAEMD
AEIELEMSRRLSYSGPGSGGRTLGLESKACYVGPRPDSPGQDEPRPCRLRESSQENLVSL
RKVSMSRMHSLPSDSYMFRPVRPANTPDPLPEAETEDGNLESGSTSSLLGVPERPVPLAE
TGSLPKLVSHPSGMSPSLQRQEALIDNSFDSRDSVATDFAEPSHASLVLPSLTSQKTASV
HTHRQAHSQRNISSKPSPESIMFESVDPADEEVRNINSSAKDWPRYAEPRSSSLSPYISC
TTPRRPLREKELKKFYSVDAQGLLAKPLWTEDTRRHSIEICPSLDDIQTLFKQSGSEKRR
SSLRSQQQRKKKTSPPCISVEPPAEGDTSLSKLSENSMLLRRRTPSCENTPYRDSLDMPE
ASLLLVPQFSIEQSEDKLSEALVSSEHSSPSPSVPFSVEVKNGGAEKNAIRRLSMCRSPL
RKRDLLHVVGNRDMDPEEPAV
NT seq
6906 nt
NT seq
+upstream
nt +downstream
nt
atgattaatttgtcatctgatttacacagcgaatttgctggcgcagatggaatacgaacg
cccgtcaggaagggatttcttaaatatatggtggaggtgaaggtctacgcctatggaaac
tcaacggtgctccttattaaggttccaactgtcagttgtgctatcatgaccgatggcgac
aggggaacgcagatccatccactgggcggcaaggatgccagggtcccaatatcagagtca
ggggacgatgaggacggaggcagcacagacaaccccgttcaagggagcctcggttcggga
gactcatgtggtcctgaacgggtcgcggacttgggttctgacagtgaggagcagctccag
tatccgcttttggctccggttgtcttcttctacctcaagcaaacgacgcgccctcgtagc
tggtgcctgcgactggtctgtaatccctggtttgaacacgtcagcatgctggtcatcctc
ctgaactgtgtcacactggggatgtatcagccctgtgaagacatccagtgccaatctgag
tggtgcaccatcctgcaggcttttgatgatttcattttcgccttctttgccatggagatg
gtcattaagatggttgctttggggatttttggccagaagtgttacctgggagacacctgg
aaccgactggatttctttattgtcatggcaggaatgatggagtactcgctggacggacac
aatgccagcttgtcagcaattcgcactgtcagggttctgaggccgctgagggctattaac
agggttcccagcatgagaatcctggtcactctgctgctggacactctgcctatgttaggc
aacgtcctccttctctgcttctttgttttctttatatttggcattgtgggagtccaactg
tgggctggactgctgaggaacagatgcttcctggaggatcattttaaaatggcctacaat
gtgtcctttttaagtccttactacaaacatgatgagagcgatgaaagcccattcatctgc
tcctccagtcgagacaatggtatgttgaggtgccaggaagttcctaagctgagagagaat
ggcattgagtgccttttgagcattgagcacattggacgttcctctcacacatctgacacg
agcagcaaggatggctgcatcaactggaaccagtattacaatgtgtgccatcctggtgag
gtcaacccacacaaaggagctatcaactttgacaacattggatatgcctggattgctatt
tttcaggtcatcactttggaaggctgggtggacatcatgtactacgtcatggatgcacat
tctttttataattttatatattttatattgcttatcattgtaggctctttcttcatgatt
aatctgtgcctagtggtgatagcaacacagttctcagagaccaagcagcgggagaaccaa
ctaatgaaggagcagcgagcacgttacctctccaatgatagcacacttgccagcttctct
gaaccaggcagctgctatgaagagctgctcaagtacatcggacacttgttccgcaaggtc
aggcgtagagcaggtcgactatacagcaactggcagactaagaggcgcaagaaggtgaat
ccaaacgatggcagtactgggcgcagcaggagacataaaagcaagcgcaaagttcactcc
atccatcaccatcaccatcatcaccaccatcatcattaccacatcagtcccagggtgaac
actgagacatctgacgtggcagaaatgaaacccaccagagccgggtttcaactcatgctg
cctccttccacagccaacctacagagcccctcctctggggtggagtctgtccatagtatc
tatcacgccgactgccactttcagggaccacagattcgctacaagtcttcggctacagct
gggaatgggcggctgatggcaggagtacatggcaacatgaactaccccaccattgttcct
tcagtgacaactccagagtccaagggaaggaagaactgtactcatcctatggcattgaac
cgagcagttggtctttttggactatctgacacttttgggaagccatacccagttgcaagc
gagtttggagaatgcagatcatctctgtcaggtcttggtcttagcatgccttgctcctca
cccaatgcccagaccaacctcctctcctgtgagttggcaaactgtccctactgtgcaaag
atactggacaaaggtgaatgcaacacaagcgactctgaaagcagccactccgacacagat
aatgtgtacgagtttcaccgggatgcggagaacaagtactggcagaggaagtggaggcag
agtgacaaaaactcagtgacccaataccaggaattgttctgcaacaaaatgaaaaggatt
gtggaaagtaaatattttaaccgaggaatcatgatcgctattctaatcaatactctgagc
atgggaattgaatatcatgaacagcccagagagctcacagatgctttggagatcagcaac
attgttttcaccagcatgtttgcccttgagatgcttctgaagctgcttgcctttggtctt
tttggatacatcaggaacccatacaacatatttgatggaattattgtcatcatcagcgtc
tgggagattatcggtcagtcagatggaggtctctcggtcctcaggacatttcgactgctg
cgggtcctcaaacttgtgcgctttctgcccgcactacgacgtcaactggtggtgctgatg
aagactatggataatgtggctactttttgcatgcttctcatgttgttcatctttatcttc
agcatccttggaatgcatctcttcggttgtaaattcagcctgaccactgacaatggagac
accattcccgaccggaagaactttgattccttgttgtgggcgattgtcactgttttccag
atcctcacccaagaggactggaatgtagttttatacaatgggatggcatcaacctcaccc
tgggcagccctgtattttgtggctcttatgacttttggcaactatgtgctctttaacctt
ctagtggccatactggtggagggctttcaggcagagggagatgccagccgttcagacagt
ggagaggataagatgtcaggcacctttgacgaggatgatcgactgcgagatccagctcct
gcagatccaaagatgtattccctaatgatgaatggccgcatggactccaggacaagtgct
gcccctccactcattatgcgcactgccgccacacccatgcccacacctacattcacagag
tcgaggcgaggcagtagcgcctccatcgaaccaagctcgtatgatcagaggtctctgtcc
agtttgcgcagctctccctgcccaccttggggtgctagcagtaactggggtagtcgccgt
tcgagctggaatagcttaggtcgggcacccagcttgaaaaggaagaaccagtcaggggaa
agggaatctctgctctccggagaagggcgctgcagctcagaggaagatgactcagaggca
ggtagcgctggagcaacatctctgcggcagtctctggagctgcctgagcttctgcacgtg
ccccctctgcgccaccactcagaataccacagcaaggctggccatgttcccccagacttc
cttctacatctagacaaccagaaggatgactgtgaggaggacatagatgacaatttctgc
ttcagagtgaggaggctaattgaggcgcacaagccggagtggtgcagggagcatgaagac
tgggcactgtatatgttctctcctcagaatgagttccgcatcttgtgtcaaaaggtcatt
gcccacaagatgtttgaccatatcgttcttgtcttcatcttcctgaattgtatcgccatt
gctttggagagaccagagattgatccacacagcacagagcgcatgtttctgactgtctca
aattacatcttcactgccatttttgtcgctgaaatgacagttaaggttgtggctttaggc
ttcttttcgggggaaaatacctacctgcagagcagctggaatattctggatggggtactg
gtctttgtctcagtcatcgatatctttgtctctatggcttctgctggaggagcaaagatt
ctgggcatcttgagagtcctgcggctcttgagaacactacggcccctaagggtcattagc
cgtgctcctggcctcaaacttgttgtggagacactaatcacatccctccgtccaattgga
aacattgtattgatctgctgtgccttttttatcatctttggcatccttggtgtccagctt
ttcaaaggcaagttctactactgtgagggaattgacacaaagaatgtcaccaataagtca
gactgccagcacatgaagtaccgctggattcggaggaagtacaactttgacaatttgggc
caggctctgatgtccttattcgttttgtcatcaaaggacggctgggtgaacattatgtat
gatgggctggatgcagtagctgttgaccagcagcctatccgcaaccacaatccctggatg
ctgctttatttcatctccttccttctcatcgtcagcttcttcgtgctcaacatgtttgtt
ggcgtagtggtggagaacttccacaagtgcaggcagcaccaagaggcagaggaggcacgc
cggnncgaagagaagcgcctacggcgacttgagaaaaagcgcaggaaagcccagcgtcgc
ccttactttgctgactactcaccagcgcgactctacattcacacgctttgcaccagccag
tacttggacctcttcatcaccttcatcatcggcatcaatgtggtcaccatgtccatggag
cattacaaccagccgcagtctctggaggaagccttgaaatactgcaattatgtcttcact
atggtctttgtgattgaagctgtcctcaaactggtggcctttggcctcagaagattcttt
aaagacaggtggaaccagctggacctggcgattgtactactatctataatggggatcact
ttggaggaaattgaaatcaatgcttcgttgccaattaaccccaccatcattcgtatcatg
agagtacttcggattgcacgagtgctgaagttgttaaagctggccactggcatgcgggca
ctcctggacactgtggtgcaggctcttccacaagtgggtaacctgggtctgctcttcatg
ctgctgttctttatttatgcagcccttggagtggagctctttggaaaattagtgtgtaat
gaagaaaacccttgtgaaggtctcagcagacatgccactttcgagaactttggcatggcc
ttcttgactctgtttcgtgtgtcgactggtgataactggaatggcatcatgaaggacaca
ctgcgggaatgtagtagtgaggacaggcactgcctcagttatctgcctctcatttctccc
atctactttgtgacctttgtgctaattgcacagtttgtgcttgtcaatgtggttgtggct
gtactcatgaaacatctagaggagagtaacaaggaagccaaggaagatgctgagatggac
gctgaaatagagctggaaatgtctcgaaggctaagctattctggaccaggctcagggggc
cggacactggggcttgaaagcaaggcctgttatgttggaccacggccagactcaccaggg
caggatgagccaaggccatgcagattacgggagagcagccaagaaaaccttgtgtcacta
cgaaaggtctcaatgtcccgaatgcactctctgcccagtgacagctacatgttccgtcct
gtcaggccagctaacacccctgaccctctacctgaggccgagactgaagatggcaatctt
gagtcaggttccacaagttctctgctcggtgtccccgagagaccagtgcccctggctgag
actggtagtctgcccaaactagtatctcatccttctggaatgagtccatcactgcagaga
caggaggctctcatcgacaactcatttgactcgagagacagtgtcgccacggactttgcg
gagccctctcatgccagcctggtcttgccttcactcacatcccagaagacagctagtgtt
catactcacaggcaggcacacagtcagagaaacatctccagtaagcccagccctgaaagt
atcatgtttgaatcggtggacccagcagatgaagaggttaggaacatcaacagctcagct
aaggattggcctaggtatgcagagccaaggagctcttctctgtcaccttacatctcctgc
actacgcctcgccggcctctgagagaaaaggagctgaagaagttctacagtgtggatgct
caaggtctactggccaaaccactgtggacagaggacacccgccgacactctattgagatc
tgtccttccctggacgatatccaaactctgtttaagcaatcagggagtgagaaaaggcgg
tcatcactccgtagccaacaacagaggaagaaaaagactagcccaccttgtatttctgta
gagccccctgcagagggagacacatcactatccaagctctctgagaacagtatgctcctt
cgtcgtaggaccccatcctgtgagaacacaccctacagagattccttagacatgcctgag
gcatcacttctcttggtaccccagttctcaattgagcagtcggaagacaaactctctgaa
gcattagtcagtagtgagcactcctccccttccccttcagttcccttttcagttgaggta
aagaatgggggggcagagaaaaatgctatccggcggctgagcatgtgcaggagccctttg
cgcaagcgtgatctgctccatgtggtgggcaacagggacatggacccagaggagcctgct
gtatag
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integrated database retrieval system
