Pseudomonas siliginis: NF676_06440
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Entry
NF676_06440 CDS
T08569
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psii
Pseudomonas siliginis
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psii03009
]
NF676_06440 (rimO)
Enzymes [BR:
psii01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NF676_06440 (rimO)
Ribosome biogenesis [BR:
psii03009
]
Prokaryotic type
ribosomal protein modification factors
NF676_06440 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
UST80957
LinkDB
All DBs
Position
complement(1349617..1350954)
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AA seq
445 aa
AA seq
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MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVLAVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVDGAPANDLDLEVVPDDVK
QDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcctgcgccggccaatccaaaggttggctttgtatctctgggttgcccg
aaagcactggtcgactccgagcgcatcctgacccagctgcgcatggaaggctatgacgtg
gtgtccacctatcaggacgccgacgtcgtggtggtcaacacctgcggtttcatcgattcg
gccaaggctgagtcgctggaagtgatcggcgaagcgatcaaggaaaacggcaaggtcatc
gtcaccggttgcatgggcgtggaagaaggcaacatccgcgatgtacacccgagcgtgctg
gccgtgaccggtccgcagcagtacgagcaagtggtcaacgccgtgcacgaagtggtgccg
ccgcgtcaggatcacaacccgctgatcgacctggtgccgccgcaaggcatcaaactgacc
ccgcgccactacgcgtacctgaagatttccgaaggctgcaaccacagctgctcgttctgc
atcatcccgtcgatgcgcggcaaactggtcagccgtccggtcggtgatgtgctcgacgag
gcgcagcgcctggtcaaatccggcgtcaaagagctgctggtgatctcgcaagacaccagc
gcctacggcgtcgacgtgaaataccgcaccggcttctggaacggcgcgccggtgaaaacc
cgcatgaccgagctttgcgaagcgctgagcacgctgggcgtctgggtccgcctgcactac
gtttacccgtacccgcacgtcgacgagctgatcccgctgatggccgccggcaagatcctg
ccgtacctggatatcccgttccagcacgccagcccgaaagtcctgaagtcgatgaaacgc
ccggcgttcgaagacaagaccctggcgcgcatcaagaactggcgcgaaatctgcccggac
ctgatcatccgttcgaccttcatcgtcggcttccccggcgaaaccgaagaagacttccag
tacctgctcaactggctgaccgaagcccaactcgaccgcgtcggctgcttccagtactcg
ccggtggatggcgcaccggccaacgatctggatctggaagtggtcccggacgacgtcaag
caggatcgttgggagcgcttcatggcgcaccagcaggcgatcagctcggcacgtctgcag
atgcgcattggtcgtgagattgaagtgctggtggatgaggtggacgagcaaggcgcggtc
ggccgttgcttcttcgacgccccggaaatcgatggcaacgtgtttattgataacggcagc
aacctgaagccgggcgacaaggtctggtgcaaggtgactgacgctgacgaatatgatctg
tgggctgagcagatctga
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