Phocoena sinus (vaquita): 116743746
Help
Entry
116743746 CDS
T07759
Symbol
POLD1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
psiu03410
Base excision repair
psiu03420
Nucleotide excision repair
psiu03430
Mismatch repair
psiu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116743746 (POLD1)
03410 Base excision repair
116743746 (POLD1)
03420 Nucleotide excision repair
116743746 (POLD1)
03430 Mismatch repair
116743746 (POLD1)
03440 Homologous recombination
116743746 (POLD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116743746 (POLD1)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116743746 (POLD1)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
116743746 (POLD1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
116743746 (POLD1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
116743746 (POLD1)
MMR (mismatch excision repair)
DNA polymerase delta complex
116743746 (POLD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
116743746
NCBI-ProteinID:
XP_032468528
Ensembl:
ENSPSNG00000019898
LinkDB
All DBs
Position
19:complement(6214812..6239159)
Genome browser
AA seq
1107 aa
AA seq
DB search
MDGKRRPGPGPGVPPKRARGGLWDEDEAYRPSQFEEELALMEEMEAEHRLQEQEEEELQS
ALEGAADGQLSTTAIDARWLRPSPPPLDPQTEPLIFQQLEIDHYVGLARPLPGVPLPSQD
SVPVIRAFGVTDEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSDLQRELNTAISRDQRGGK
ELTGLAVLAMELCSRQSMFGYHGHGPSSFLRITLALPRLVAPARRVLEQGIRVAGLGTPS
FPPYEANVDFEIRFMVDADIVGCNWLELPAGKYVLRPEGKATLCQLEADVLWSDVVSHPP
EGQWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPC
APILGAKVQSYEREEDLLQAWSAFVRIMDPDVITGYNIQNFDLPYLISRAQILKVQAFPF
LGRVSGLRSSIRDSSFQSRQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFH
FLGEQKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAFLPLRLLERLMVLVNAMEMARVTG
VPLSYLLSRGQQVKVVSQLLRQAMRQGLLMPVVKTEGGEDYTGATVIEPLKGYYDVPITT
LDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKTAVRKGLLPQIL
ENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSV
TGFGRQMIERTKQLVESKYTVENGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAAD
WVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLV
ANLVTASLRRLLIDRDPAGAVAHAQDVISDLLCNRIDISQLVITKELTRAAADYAGKQAH
VELAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQ
QLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRQNCCIGCRTVLG
HQGAVCKFCEARGSELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFY
MRKKVRKDLQDQEQLLRRFGPPGPEAW
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaagcggcgaccaggcccagggcctggggtgcccccaaagcgggcccgtggg
ggcctctgggatgaggatgaggcatatcggccatcgcagttcgaggaggagctggcgctg
atggaggagatggaggcagagcacaggctgcaggaacaggaggaggaggagctgcagtcg
gccctggagggggctgcggacgggcagctctccacgacagccatagatgcccggtggctt
cggccctccccaccccccctggacccccagacggagcccctcatcttccagcagttggaa
atcgaccattacgtgggcctagcacggcccctgcctggggtgcccctgccgtcccaggac
tccgtgccggtgatccgcgccttcggggtcaccgacgagggcgtctctgtctgctgccac
atccacggctttgcgccctacttctacaccccagcaccccccgggtttgggcctgagcac
ctgagcgacctgcagcgggagctgaacacagccatcagccgggaccagcgcgggggcaag
gagctcacggggctggccgtgctggccatggagctgtgctcccggcagagcatgtttggg
taccacgggcacggcccctcctcgtttctgcgcatcactctggcactgccccgcctcgtg
gctcccgcccgccgtgtcctggagcagggcatccgcgttgccggcctgggcacccccagc
ttcccgccctatgaggccaacgttgactttgagatccggttcatggtggacgcggacatc
gttggctgcaactggctggaactcccggctgggaaatacgtcctgaggccggaggggaag
gccacactgtgtcagctggaggcggacgtgctgtggtcggatgtggtcagtcacccgcca
gaagggcagtggcagcgaatcgcacctctgcgggtgctcagttttgatatcgagtgcgcg
ggccgcaaaggcatctttccggagcctgagcgggaccccgtgatccagatctgctccctg
ggcctgcgctggggcgagccagagcccttcctgcgcctggcgctcaccctacggccctgc
gcccccatcctgggcgccaaggtgcagagctacgagcgggaggaggacctgctccaggcc
tggtccgccttcgtccgcatcatggaccccgacgtgatcactggctacaacatccagaac
ttcgaccttccgtaccttatctcccgggcccagatcctcaaggtgcaggccttccccttc
ctgggccgtgtgtctggcctccgctccagcatccgggattcgtccttccagtccaggcag
accggccggcgggacagcaaggtggtcagcatggtgggccgcgtgcagatggacatgctg
caggtgctgctgcgggagtacaagctccggtcctacacgctcaatgccgtgagcttccac
ttcctgggcgagcagaaggaggacgtgcagcacagcatcatcactgacctgcagaatggg
aacgaccagacgcgccgccgcctggccgtgtactgcctcaaggacgccttcctgcccctg
cggctgctggagcgcctcatggtgctggtgaatgccatggagatggcgcgcgtcaccggc
gtgcccctcagctacctgctcagccgcggccagcaggtcaaggtcgtgtcccagctgctg
cggcaggccatgcgtcaggggctgctgatgcccgtggtgaagacggagggcggcgaggac
tacacgggggccacagtcatcgagcccctgaaagggtactatgatgtcccaatcaccacc
ctggacttctcctcgctgtacccgtccatcatgatggcccacaacctgtgctacaccacg
cttctacggcccggggccgcccagaaactgggcctgaccgaggatcagttcatcaagaca
cccacgggggacgagtttgtgaagacggcggtgcggaaggggctgctgccccagatcctg
gagaacctgctcagcgcccggaagagggccaaggccgagctggccaaggagacagacccc
ctacggcggcaggtcttggacgggcggcagctggcactgaaagtgagcgccaactctgtg
tacggcttcactggtgcccaggtgggcaagctgccatgcctggagatctcacagagcgtc
actgggttcgggcgccagatgattgagagaacgaagcagctcgtggagtccaagtacaca
gtggagaacggctacagtgccaatgccaaggtggtgtatggcgacactgactctgtcatg
tgccgatttggcgtctcatctgtggctgaggccatggccctgggacgggaggctgcggac
tgggtgtctggccacttcccctcacccatccggctagagtttgagaaagtctatttcccg
tacctgctcatcagcaagaagcggtatgcgggcctgctcttctcctcccggtccgacgcc
catgaccgcatggactgcaagggcctggaggccgtgcgcagggacaactgccccctagtg
gccaacctcgtcaccgcctctctgcgccgcctgctcatcgaccgagaccccgcgggcgcc
gtggcgcatgcgcaggacgtcatctccgacctgctatgtaaccgcattgacatctcacag
ctggtcatcaccaaggagctgacccgcgcagccgcagactacgcgggcaagcaggcccat
gtggagctggccgagaggatgaggaagcgggaccccgggagcgcgcccagcctgggtgac
cgtgtcccctacgtgatcatcagtgccgccaagggtgtggccgcctacatgaagtccgag
gaccccctcttcgtgctggagcacagcctgcccatcgacacgcagtactacctggagcag
cagctcgccaagcctctcctgcgcatcttcgagcccatcctgggcgagggccgagccgag
gccgtgctgctgcgcggggaccacacgcgctgcaagacagtactcacgggcaaggtgggc
ggcctcctggccttcgccaaacgccaaaactgctgcattggctgccgcactgtcctcggc
caccagggagccgtgtgcaagttctgcgaagcccgggggtcggagctgtatcagaaggag
gtatcccacctgaacgccctggaggagcgcttctcgcgcctctggacccagtgccagcgc
tgtcagggcagcctgcacgaggacgtcatctgcaccagccgggactgccccatcttctac
atgcgcaagaaggtgcggaaggacctgcaggaccaggagcagcttctgaggcgcttcggg
ccccccggccccgaggcctggtga
DBGET
integrated database retrieval system
