KEGG   Phocoena sinus (vaquita): 116760252
Entry
116760252         CDS       T07759                                 
Symbol
POLR2F
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03020  RNA polymerase
psiu03420  Nucleotide excision repair
psiu04623  Cytosolic DNA-sensing pathway
psiu05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116760252 (POLR2F)
  09124 Replication and repair
   03420 Nucleotide excision repair
    116760252 (POLR2F)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    116760252 (POLR2F)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    116760252 (POLR2F)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psiu03021]
    116760252 (POLR2F)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116760252 (POLR2F)
Transcription machinery [BR:psiu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     116760252 (POLR2F)
  RNA polymerase III system
   RNA polymerase III
     116760252 (POLR2F)
  RNA polymerase I system
   RNA polymerase I
     116760252 (POLR2F)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116760252 (POLR2F)
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF3309
Other DBs
NCBI-GeneID: 116760252
NCBI-ProteinID: XP_032500735
Ensembl: ENSPSNG00000004546
LinkDB
Position
10:complement(10322543..10333690)
AA seq 237 aa
MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNWPYQHPSTFPPPPFSHGMAEPF
QTEVPHSEGWGHRPSCASTSRLPQGPKDPHHHSPLPARRELRRLGGGRAHHHRLSRDHLP
ACASAPVPSLVFFIRVNNKFFNIATPPPPAAWEAYPLLPPCCLEGAPIPVALRPSAL
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtcagacaacgaggacaactttgatggcgacgactttgatgacgtggaggaggatgaa
gggctagatgacttggagaatgccgaggaggagggtcaggagaatgttgagatcctccct
tctggagagcgaccgcaggccaaccagaagcgaatcaccacaccatatatgaccaagtat
gagcgagcccgtgtgctgggcacccgagcccttcagatcgcgatgtgtgcccccgtgatg
gtggagctggagggggagacagatcccttgctcatcgccatgaaagagctcaattggcct
taccaacatccctctacgtttccccctcctcccttcagccatgggatggcagagcccttc
cagactgaagtgccacactcagagggctggggtcaccggccctcatgtgcctcgacttct
cgcctgccacagggcccgaaagatccccatcatcattcgccgctacctgcccgacgggag
ctacgaagactggggggtggacgagctcatcatcaccgactgagccgggatcaccttccc
gcctgtgcctcagccccagtgcctagtctcgtgttctttatacgtgtaaataataaattc
ttcaacattgcaacccctccgcctccagctgcctgggaggcctacccacttcttccgccc
tgctgcctggagggtgcgcccatcccagtggccctgcgaccgtcagctctttag

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