Phocoena sinus (vaquita): 116762763
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Entry
116762763 CDS
T07759
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psiu03016
]
116762763 (CDKAL1)
Enzymes [BR:
psiu01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
116762763 (CDKAL1)
Transfer RNA biogenesis [BR:
psiu03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
116762763 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
116762763
NCBI-ProteinID:
XP_032506051
Ensembl:
ENSPSNG00000008396
LinkDB
All DBs
Position
11:complement(87273735..87933243)
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AA seq
612 aa
AA seq
DB search
MCHGELHLKSLQFPESGVLIFQEDLRLIANNQEKMPSASCDTLLDDIEDIVSQEDSKPQD
RHFVRKHVVPKVRRRNTQKYLQDENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQL
AAYGYKITENASEADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQD
YLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEI
ISINTGCLNACTYCKTKHARGNLASYPVDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDI
GTSLPALLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASD
TVLMEMKREYCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFP
SLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQVFHSYNPYDHKIGERQKVLVTEESF
DSKFYVAHNRFYEQVLVPKNPTFMGKMVEVNVYESGKHFMKGQPVSDAKVYAPSISKPLA
KGEISGLTEEFRNMLGNHLNAVSHTLGATQQDSASSRMALQLQRLHQDCTLRMSVVLALF
AFLFAFLIKVCN
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcatggcgagctccatctaaagtcgctgcagtttccggagagtggcgtactcatc
tttcaagaagatttgagactaattgcgaataatcaagagaagatgccttctgcatcctgt
gatacactcctggatgacatagaagatattgtgtcacaagaagattcaaagccccaagat
aggcattttgtgagaaagcacgttgttcccaaggtgcgaaggcgaaatacccaaaaatat
ttgcaagatgaaaacagtccaccaagtgatagcactattccaggcatacagaaaatttgg
atacggacttggggttgttctcataataattcagatggagaatatatggctggacaacta
gctgcttatggatataaaattacagaaaatgcatcagaggcagacttatggctcctgaat
agttgtactgtaaaaaatccagctgaagaccactttagaaactcaattaaaaaagctcaa
gaggagaacaagaaaatagtgcttgctggatgtgttcctcaagcccagcctcgtcaggac
taccttaaagggctgagcatcataggggttcaacagatagatcgtgtggtagaagttgtg
gaggaaacaattaaaggtcactctgtgagactgctgggtcagaaaaaggataatggaaaa
cggttggggggagcacgactggatttgccaaagattaggaagaatccactgatagaaatc
atttccatcaacactgggtgtctcaatgcttgtacctactgcaaaactaaacacgccaga
ggaaatttggccagttatccagttgatgagttagtagatagagccaaacagtcttttcaa
gagggtgtttgtgaaatatggttgaccagtgaagacacaggggcttatggcagagatatt
ggcaccagtcttcccgcactgctgtggaaactggttgaagtgattccggagggagcaatg
ctgaggcttggcatgacaaatccgccctatattttagagcatctggaggaaatggcaaaa
atccttaatcacccccgagtctatgcctttctgcacataccagtccagtctgcctctgac
actgtgctcatggaaatgaaaagagaatactgcgtggctgacttcaaaagagtagtggat
tttctgaaagacaaagttcctggaataactattgctacagacattatctgtggttttcct
ggagaaacagaccaagattttcaagaaacagtgaaacttgttgaagagtacaaatttcca
agtctctttattaaccaattttacccaagaccaggaactcccgctgcaaaaatggagcaa
gttccagcgcaagtgaaaaagcaaagaacaaaagatctttctcaagtatttcattcttac
aacccatatgatcacaagattggtgagagacaaaaagtgttagtcacagaagaatctttt
gattccaagttttatgttgcacacaatcgattctatgagcaggttttagtgccaaagaac
cccacattcatggggaaaatggtcgaagtgaacgtttatgaatcaggaaaacattttatg
aaagggcagccagtttcagatgccaaagtatacgcgccatccatcagcaaaccgttagca
aaaggagaaatctcaggtttaacagaggaattcagaaatatgcttgggaaccacctgaat
gcggtatcccacaccttgggtgcaactcagcaagactcggcgagttccagaatggcgcta
caattgcaaaggctacaccaggactgtacactgaggatgtctgtggtcctggctctgttt
gcttttctttttgcttttttgatcaaggtctgtaattaa
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