Phocoena sinus (vaquita): 116764418
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Entry
116764418 CDS
T07759
Symbol
POLR1A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116764418 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116764418 (POLR1A)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116764418 (POLR1A)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116764418 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116764418
NCBI-ProteinID:
XP_032508916
LinkDB
All DBs
Position
13:complement(76630722..76706459)
Genome browser
AA seq
1718 aa
AA seq
DB search
MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFEKLYLLLRGSCLNCHMLTCPRAVIHLL
LCQLRVLEVGALQAVYELERIQYRFLEENADPTAFEIQEELERYTTKILQNNLLGAHGAR
VKNVCESRSKLIAFFWKAHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRKADQKDT
EPQGIEEAQMGKRGYLTPTSAQEHLTALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLD
FLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPREVAAPAT
DEEKDPSIAMDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPSVHPGASMVINEDGSRTALSASNLTQREAVAKQLLTPAMGAPKPQGTKLXVC
RHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQYMELVYR
GLTDRVGRVKLFPPAILKPCPLWTGKQVVSTLLINVIPEDHVPLNLSGKAKIGGKAWVKE
SPRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLT
CLARLFTAYLQLYRGFTLGVEDILVKPKADVRRHRIIEESTHCGPRAVRAALNLPEAASC
DEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRPFPENNLHMMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI
KPAEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLY
GEDGLDIPKTQFLQPKQFPFLASNCEVIMKSKHLHEVLSRADPQKALRHFKAIKKWQSKH
SNTLLRKGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQMLRMWAELDEQSRRKYQKKA
SPCPDPSLSVWRPDTYFASVSETFEKKVDDYSREWAAQAERSYEKAELSLDRLRTLLRLK
WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPTMSVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQNKFRVYELRF
QFLPHAYYQQEKCLRPGDILHFMETRFFKILMDSIRKKNSKASAFRSVNTRRATQRDLDN
EGESERSRGEQEGDEEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEDGEDGEDGE
DLQEEGTVLGEGTPQAQAQEEEGGSGPEEDSLPAAPLAQPWKPTRSREPQDAEAVERRVR
AVRECHPFIEDYQYDTQGGLWCQVMVKLPLIKVNFDMSSLVVSLAXSAVVYATKGITRCL
LNETTNSKNEKELVLNTEGINLPELFKYAEGVLDLRRLYSNDIHAMASTYGIEAALRXIE
KEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLK
QATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgttgggatcaaagaacatgccctggcggcggctgcagggcatttctttcgggatgtat
tcggccgaagagctcaagaaattaagtgttaagtccattacaaaccctcggtacctagat
agcctggggaacccgtcggtgaacggcctgtacgatctagctctgggccccgcagactcc
aaagaggtgtgctccacctgcgtgcaggacttcaacaactgctccgggcacctgggccac
atcgagctcccgctcactgtgtacaaccctctcctctttgagaaactctacctgctgctc
cggggttcctgtttaaactgtcacatgctgacttgcccccgggctgtgattcacctgctg
ctctgccagctgagagttctggaagtcggggccctacaagcagtgtacgagttggagaga
attcagtacaggtttctggaagaaaatgctgatcctactgccttcgaaattcaggaagag
ttagaacgatatacaaccaaaatcctacagaacaacctcctgggagcccacggcgcacgt
gtaaaaaatgtctgtgagagcagaagcaaacttattgctttcttctggaaggcacatatg
actgctaagcgatgtccccactgcaaaaccgggcggtcagttgtccgaaaggagcacaac
agcaaactgacaatcacgtatccggccatggtgcacaggaaagctgaccagaaggacact
gagccccagggaattgaggaagctcagatgggaaaacgaggatacttgacacccaccagc
gctcaagaacatctcacggctctttggaagaatgaaggattctttctgaattaccttttt
ctgggactggaagatgttggcatggagtccagattcaatcccagtatgttctttctggat
ttcttggtggtgccaccctcaaggtatcgccctgtcagccgcctcggggaccagatgttc
accaacggccagacggtgaacctgcaggctgtcatgaaggatgtggttctgatccgaaag
cttctggccttgatggcccaagaacaggagctgccaagagaggtggcagcacccgccaca
gatgaggaaaaagacccttcgatcgctatggaccggtcctttctgagtctacttccaggc
cagtccctcacagacaaactttacaacatttggattcgccttcagagccacgtcaatatt
gtgtttgatagtgagatggacaaattaatgatggaaaagtaccctggcatcagacagatc
ctggagaagaaggatggtctgttccggaagcacatgatgggaaagcgagtagattatgca
gcccgctcagtcatctgcccggacatgtacatcaacaccaatgaaattggaattcccatg
gtgtttgccacaaagctgacctaccctcagccagtcaccccctggaacgttcaggaactg
aggcaggcggtcatcaacggccccagtgtgcacccaggagcctccatggtcatcaatgag
gatggtagccgcacggccctgagtgcctcgaacctaacccagcgggaggctgtggccaaa
cagctcctgacaccagccatgggggcacctaagccccaggggacaaaattgtgagtgtgc
cggcacgtgaagaatggggacattctcctcctgaaccgacagcccaccctgcacagaccc
tccatccaggcgcatcgcgcccgcatcctgcccgaggagaaagtcctgcggctccactat
gccaactgcaaggcctacaacgccgactttgatggagacgagatgaacgcccacttccct
cagagtgaactgggccgggccgaggcctacgtcctggcctgcacagatcagcagtacctt
gttcccaaggatggccagccattggcagggctgatccaagatcacatggtttcgggtgca
aacatgaccattcgaggctgctttttcagccgggagcagtatatggagctggtgtaccga
ggactcacagacagagtgggacgtgtgaagctctttcctcctgccatcctgaagccctgt
ccgctgtggacaggaaagcaggttgtgtccacgctgctcatcaacgtaatcccagaggat
cacgtcccactgaacttgtcaggaaaggcgaagattggcgggaaggcctgggtgaaggag
tctcctcggcccgttcccggctttaaccccgactccatgtgcgagtcccaggtgatcatc
agggaaggggagctgctctgcggggtgctggacaaggcgcattacgggagctccgcctac
ggcctggtccactgctgctacgagatctacggcggggagactagcggcaaggttctcacc
tgcctggcccgcctcttcaccgcctacctgcagctctacagaggcttcactttgggcgtg
gaagacattttggtcaagccgaaggcagatgtcaggagacacaggatcattgaagagtcc
acccactgtgggccccgggctgtcagggctgcgttaaaccttccagaagcagcatcgtgt
gatgaggtccgagggaagtggcaggatgcccatctgggcaaagaccagagggattttaac
atgattgatctgaagttcaaggaggaagtgaatcattacagcaatgaaattaacaaggca
tgcatgcctttcggcctgcacagaccgttcccagagaacaacttgcatatgatggtgcag
tctggagccaaaggttcaactgtgaataccatgcagatctcgtgcctgctgggccagatc
gaactggaaggccggagacccccgctgatggcatctggcaagtcactgccctgcttcgag
ccgtatgagttcacccccagggctggcggcttcgtcactggcagattcctcaccggcatc
aagcctgctgagttcttcttccactgcatggccgggcgagagggtctggtggacacggct
gtgaagaccagccgctctggctacctccaaaggtgcgtcatcaagcacctggaggggctg
gtcgtccagtatgacctgacagtccgcgacagcgacggcagcgtggtgcagttcctgtat
ggagaggacggcctggacatccccaagacacagttcctgcagcccaagcagttccccttc
ctcgccagcaactgtgaggtgataatgaaatcgaagcacctccatgaagttttatccaga
gcagatccccagaaagctctccgccacttcaaagccatcaaaaaatggcaaagcaagcat
tccaacaccctgctgagaaaaggcgccttcttgaattattcccagaaaattcaagcagct
gtgaaagccttgaacctcgagggcgcaaaccagaacggccgcagccctgagactcaccag
atgttgaggatgtgggctgagttagatgagcagagccggaggaaataccagaagaaggcg
tctccttgtcctgaccccagtctgtctgtctggcgcccagacacctactttgcatcagtg
tcagaaacatttgaaaagaaggtggatgactacagtcgcgagtgggcagctcaagcagag
aggagttacgagaaagcggagctctctctggaccggctgaggactcttctgcggctgaag
tggcagcgctcgctgtgtgacccgggagaggccgtgggcctgttggccgcacagagcatc
ggggagccctccacacagatgaccctgaacaccttccactttgccggcagaggcgagatg
aatgtcaccctgggcattcccaggttgagggagattctcatggtggccagcgccaacatc
aagacgcccacgatgagtgtgcccgtgttcaacaccaagaaagcgctgaagaaagtgaaa
agcctgaagaagcagctcaccagggtgtgcctcggggaggtgttggagaaaattgatgtc
caggagtccttctctatgggggagaaacagaacaagttccgggtgtacgagctgcggttt
cagttcctgccacacgcgtactaccagcaggaaaagtgcctgagacccggggacatcctg
catttcatggaaacaagattctttaaaattctgatggattccatcagaaagaagaatagt
aaagcatcagctttcagaagcgtaaacacgcggagagctacccagcgggatctagacaac
gaaggcgagtcggagaggagtcggggagagcaggaaggcgacgaggaagaggaggggcac
atcgtggatgccgaagctgaggagggagacgctgatgcctcggacgccaaacgcaaggag
aaacaagaggaggaggtcgactacgagagcgaggacggtgaagacggcgaggacggcgag
gacctgcaggaggaagggactgtcctcggggaaggcactccccaggcccaggcgcaggag
gaggaggggggctcaggccccgaggaggactcgctccccgccgccccactggcacagccg
tggaagcccacccgcagccgggagccccaggacgccgaggcggtggagcgccgggtgcgg
gccgtgcgcgagtgccacccgttcatcgaggactaccagtacgacacccagggcggcctg
tggtgccaggtgatggtgaaactccctctcatcaaggtcaactttgacatgagctccctg
gtagtgtccctggccncaagcgccgtcgtctacgcgaccaagggcatcaccagatgcctc
ctgaacgaaaccaccaacagtaagaacgagaaggagctcgtcttaaacacagaaggcatc
aacctcccggagctgttcaagtacgccgagggtgtcctggatttgcgtcgcctctattcc
aacgacatccatgccatggccagcacgtacggcatcgaggccgcgctgcggntgatcgag
aaggagatcaaggatgtgttcgccgtgtacggcatcgccgttgacccccgccatctctcc
ctggtcgctgactacatgtgcttcgagggtgtttacaagccactgaaccgctttgggatc
cggtcgaactcctccccactgcagcagatgacgtttgagaccagcttccagtttctgaag
caggccaccatgatgggatcccacgatgagctgaggtcgccgtcagcctgcctcgtggtt
gggaaggtcgtcaagggcgggacaggcctcttcgagctcaagcagcccctgagatag
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integrated database retrieval system
