Phytophthora sojae: PHYSODRAFT_500633
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Entry
PHYSODRAFT_500633 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHYSODRAFT_500633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoj03021
]
PHYSODRAFT_500633
Enzymes [BR:
psoj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PHYSODRAFT_500633
Transcription machinery [BR:
psoj03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
PHYSODRAFT_500633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
20657865
NCBI-ProteinID:
XP_009525720
JGI:
Physo3_500633
UniProt:
G4ZFX8
LinkDB
All DBs
Position
Unknown
AA seq
1532 aa
AA seq
DB search
MQSGGRARRNPLVKQLVLENDRPAKISHLNFGLLSDVDMMQMSELRVHSKDLFKVQTREP
AADGVLDKRLGVSNKKDTCDTCHLKLADCVGHFGYIKLELPVFHIGYFKAITEILQNICK
SCSRVLLPPAERETFLRRMRDPRADVLRLVGLRKKIAALCKKTIKCPYCDAINGSVRKIT
STTLKLVHEKYRAKATHDLRNVFVAQFAEAQANNPEIGAHLPKAQEDLSPLVVLQLFKEI
PDQDCELLWVDADNGRPERLILNSVLVPPVCIRPSVAMDGGSGSNEDDITVKLQEIVQVN
FALRAALQKGASLKMVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKSGIRGLCQRLKGKQG
RFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVN
GPNVHPGANIIRIEGQKFTKNLMYGDRASLADELKIGDIVERHMEDGDIVLFNRQPSLHK
MSIMSHRVKVMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQNLI
TPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVISIMSDANEHIELPLPAIVLPVR
LWTGKQVISLLVKPNSQTKVMANLELKERNYTNNKYMCWKDGYVCFRNSELICGNLGKKT
LGDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGIDDVTPSEELAKEK
EKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECMRTLPF
HNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHASAKGF
VANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSCQYDQTVRNS
EGSVVQFTFGDDGLNPAYMEGDDRPVDFHRLLEHIRNTLPDRESPALLPFELRRLGKQVV
QRPQFQAILPTGRKFLIEIEEFLGSVASEIASNRTGCGLDSMDKAVKTYASKLEKAFDDD
EAASVLKTKSETGDMKKEKKIQVSTKLEKLAKPQGRRRLVKPEAESDDDTEDSDEDMSMD
LTTYKQKGLDKVGLPEWERTRFKTAKARAEWTKRAGKNGTAEKEEAAWLLSHNVCRITAK
QVEKLLEVSLYKYNRAGMEPGEAVGAVGAQSISEPGTQMTLKTFHFAGVASMNVTLGVPR
LKEIINASKVISTPIITAALVCKTDERSARIVKGRIEKTTLGEIAVHIKEVFARDQAYLS
VKLDLTAIEQLHLNITARSVRNSILNAVGVGPRGALRLLKEQHVLLNARCPDKLRLLAPP
NYKGAKGDSRGAYFALQALKAELPGVIVQGIPTVNRAVINYEEVQDASATKSLHLLVEGY
GLAEVMGIPGVDGLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLL
SDIMTFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMG
IPIPLGTGIFKLLRQVEKPRVQQRRPLLSAQL
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcggcgggcgcgcgcggcgcaacccgcttgtgaagcagctcgtgctggagaac
gaccggccggccaagatcagccacctgaacttcgggctgctctcggacgtggacatgatg
cagatgtcggagctgcgcgtgcactccaaggacctgttcaaggtgcagacgcgcgagccg
gcggccgacggcgtgctggacaagcgcctgggcgtgtccaacaagaaggacacgtgcgac
acgtgccacctcaagctggcggactgcgttggccacttcggctacatcaagctggagctg
ccggtcttccacatcggctacttcaaggccatcaccgagatcctgcagaacatctgcaag
tcgtgcagccgcgtgctgctgccgcccgccgagcgcgagaccttcctgcgccgcatgcgc
gaccccagggccgacgtgctgcgcctcgtggggctgcgcaagaagatcgcggcgctctgc
aagaagaccatcaagtgcccgtactgcgacgccatcaacggctccgtgcgcaagatcacc
agcaccacgctcaagctcgtgcacgagaagtaccgcgccaaggccacgcacgacctgcgc
aacgtgttcgtggcgcagttcgccgaggcgcaggccaacaacccggagatcggcgcgcac
ctgcccaaggcgcaggaggacctgagcccgcttgtggtgctgcagctcttcaaggagatc
ccggaccaggactgcgagctgctctgggtggacgcggataacggccgccccgagcggctg
atcctcaactcggtgcttgtgccgcccgtgtgcatccgcccctccgtggccatggacggc
ggctccggcagcaacgaggacgacatcacggtcaagctgcaggagatcgtgcaggtcaac
ttcgccctgcgtgcggcgctacagaagggcgcgtcgctcaagatggtcatggaggactgg
gactttctgcagattcaggtggcgcagctcatgaacggcgacacccccggactcgtcaag
ccgcccggagccaagagcggcatccgaggactgtgccagcgcctcaagggcaagcagggt
cgcttccgtggtaacctgtcgggcaagcgtgtggacttttccggtcgtaccgtcatttcg
cccgacccgaacctgcgcattgatcaagtgggcgtccccgagcatgtggccaagacgatg
acgtatccggagaaggtcacgcgctacaacattgagaagctgcgcaagtgcgtcgtgaac
ggaccgaacgtgcaccctggagcgaatatcatccgcattgaagggcaaaagtttacgaag
aacctgatgtacggcgaccgcgcgagtctggctgacgagctcaagattggtgacatcgtg
gagcgtcacatggaggacggcgacatcgtgctgttcaaccgtcagccttcgcttcacaaa
atgtccattatgtcccaccgtgtgaaggtgatgccgtggaggacgttccggttcaacgag
tgtgtgtgttcgccgtacaacgccgatttcgatggtgacgagatgaacatgcatctgccg
cagacggaggaggcgcgtaccgaggctattacgctcatgggtgtggagcagaaccttatc
acaccccgtaacggtgagccgctggttgcagcgacgcaggatttccttacggcgtcgtac
ttgttgacgcaaaagaacattttcttcaaccgcgagcaattctgccaggtgatttccatc
atgagtgatgcgaacgagcacattgagctgcccctgcccgcgatcgtgctccctgtgcgc
ctgtggacgggaaagcaggtgatcagtcttttggtgaaacccaactcgcagacgaaggtg
atggcgaacctggagctcaaggagcgcaattacacgaacaacaagtacatgtgctggaag
gacggttacgtctgcttcaggaacagcgagctgatctgtggcaacctgggcaagaagacg
ttgggtgacggtagtaagcagggtctgttctacgttctgattcgtgaccacggctctcac
gaggctgcgcgctgcatgaacaggctggctaagttgtgcgcgcgctggctgggcaacttt
aaggggttctcgattggtattgatgacgtcacgccttcggaggagcttgccaaggaaaag
gaaaagctgttgcaggctggttacgacgcagcaaacaactccattgaggaataccgacgt
ggcaagctttccttgaagcctggatgtaacgctattcagtcgctggagagtgaactcaac
ggtctcctcggtaaactgcgtgagactgcaggtgctgagtgtatgcgcacgttgccattc
cacaacaacccgcgtatcatggctgaatgtggctctaagggtagcgcactaaatatctcg
cagatgatggcgtgtgtgggtcagcagtctgtgggcggcaagcgtgtcccggagggcttc
gtgaaccgcacgctgcctcacttcctccctcacgctctgcacgcctctgccaagggtttt
gtggccaactcgttctacagcggactgacggctaccgagttcttcttccatacaatggga
ggacgtgaaggtttggtcgatactgctgtgaagacggccgagactggatacatggcccgt
cgtctcatgaaggctttggaggacttgtcttgccagtacgaccagactgtgcgcaactcc
gaaggctccgtggtgcagttcacgttcggtgatgatggcctgaacccagcgtacatggaa
ggcgatgaccgaccggttgacttccatcgcctgctggagcacatccgtaacacattgccc
gaccgtgagtccccggcgttgctgccattcgagctgcgtcgcctgggtaagcaggtcgtg
cagcgccctcagttccaggctattctgccgaccggtcggaagttcttgattgagatcgaa
gagtttttgggctccgtcgcgagtgaaatcgcctcgaaccgcacgggctgtggccttgac
tcgatggacaaggcggtgaagacgtacgcttctaagctcgagaaggctttcgacgacgat
gaggcggccagtgtgctcaagaccaagtcggagactggtgacatgaagaaggagaagaaa
attcaagtgtcgactaagctggagaagcttgctaagcctcaaggccgtcgccgcttggta
aagcccgaggctgagtccgacgacgacacagaggactcggatgaggacatgagcatggac
ctgaccacgtacaagcagaaggggctggacaaggtcggcctgccggaatgggagcgcact
cgcttcaaaactgcgaaggctcgtgctgagtggaccaagcgcgcaggcaagaacggcact
gctgagaaggaggaggccgcttggctgttgtcgcacaacgtgtgccgcattacggcgaag
caggtggagaagctgctagaggtctctctgtacaagtacaaccgtgcgggtatggagccc
ggtgaggctgtgggtgccgtgggtgcccagtcgatctcggagcctggtacgcagatgacg
ctgaagacgttccactttgccggtgttgccagcatgaacgtgacgctcggtgtgccgcgt
ctcaaggagattattaacgcctccaaggtcatcagtacgcccattatcacagcggcgttg
gtgtgcaagacggacgagcgctcggcgcgtatcgtgaagggccggattgagaagacgacg
ctgggtgaaatcgctgtgcacatcaaggaggtgttcgcccgcgaccaggcctacctttcc
gtgaagctggacctgacggccatcgagcagctgcatctgaacatcacggcgcgatctgtg
cgcaacagcatcctgaacgccgtcggcgtgggtccgcgtggcgcgttgcggctactgaag
gagcagcacgttcttctgaacgcgcgctgccccgacaaactgcgtctgttggcgcctccc
aactacaagggagccaagggcgactcgcgcggtgcctacttcgctctgcaggcgctcaag
gctgaacttcctggcgtgattgtgcagggtatcccgacggtgaaccgcgccgtgatcaac
tacgaggaggtgcaggatgcgagcgcgaccaagtcgctccacttgctggtggaaggttac
ggtctcgccgaagtgatgggtatcccgggtgtcgacggccttcacacgacctcgaaccac
atcattgaggtggaaaagacgcttggtatcgaggcggcgcgtgagctcatcagctccgaa
gtgaactacatcatgagcgcgtacggtatcggtatcgacagacgtcacttaatgctgctg
tcggatatcatgacgttcaagggcgaagtgctgggtatcacgcgcttcggtatcgccaag
atgaaggagagcgtgctcatgctggcgtcgttcgagaagacgaccgaccacctcttcgac
gctgccgtgcactcacgcacggacgctatcgtgggtgtgagtgagtgcattatcatgggt
atcccgatcccgctgggcacgggcatcttcaagttgctgcgccaggtcgagaagccgcgc
gtgcagcagcggcggccgcttctgtccgctcagctttag
DBGET
integrated database retrieval system