Papaver somniferum (opium poppy): 113291523
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Entry
113291523 CDS
T05758
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03020
RNA polymerase
psom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113291523
09124 Replication and repair
03420 Nucleotide excision repair
113291523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113291523
03400 DNA repair and recombination proteins [BR:
psom03400
]
113291523
Enzymes [BR:
psom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113291523
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113291523
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113291523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
113291523
NCBI-ProteinID:
XP_026396835
LinkDB
All DBs
Position
1:78718672..78726380
Genome browser
AA seq
1845 aa
AA seq
DB search
MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK
FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI
EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN
LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ
LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP
GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP
EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP
YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAFSPTLSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPVYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYH
PSSAKYSPSLAYSPSSPRISPSSPYSHTSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPGA
NPDYSPSSPQFSPSAGYSPTAPGYSPSSTSQFTPETSNKDDGSTR
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atggatatgcgatttcctttctctcctgctgaggttgctaaagtccgaatggttcagttc
ggtatcctcagtccagatgagattaggcaaatgtcggttgtacagatcgaacacagtgaa
acaactgaacgagggaaacctaaaccaggaggattaagtgatactcgattaggaacaatt
gatagaaagatgaagtgtgaaacatgtacagctaacatggcggaatgtcctggacacttt
ggacacttagaacttgctaaacctatgtttcatattgggtttatgaagattgttcttagt
ataatgcgatgtgtctgcttcaactgttctaaaatccttgcagatgaggaggatcacaag
ttcaagcaatctcagaggataaagaatccaaaacatcgactaagaaaggttcttgatgct
tgtaagaataaaacaaagtgtgatgggggtgatgaaattgatgtccaagacgaagatttg
gaaaaacctgtgaagaagagtagagggggttgcggtgctcaacaaccgaagctcactatt
gaaggtatgaaaatgattgcagaatacaaaattcaaaggaagaaaactgacgatccagaa
cagcttcctgaacctgttgaaagaaaacaacagcttactgcagagagggttttgagtgtc
ctcaagcggataagtgacgaggactgtatattgttgggtttgaaccctaaatatgcccgc
ccagattggatgattttacaagtcctccctatacctcctcctcctgtgagaccttctgtg
atgatggatacatcagctaggagtgaggatgatttaactcatcaattggcgatgattatt
agacacaatgagaatctgaggaagcaggagagaaatggtgctcctgcccacattatttcg
gagttcgcacaactattacagttccatattgcaacttattttgacaatgagctgcctggt
caaccaagggctacacaacgttctggaagaccaatcaaatctatatgcagtaggcttaag
gcgaaggaaggtcgaattaggggtaacttaatggggaagcgtgttgatttttcagctcgt
actgtcatcacgccagatccaacaatcaacattgatgaactgggagtcccttggagtatt
gctttaaatctgacatatccagaaacagtgacaccctataacatcgaaaggttgaaggag
cttgttgaatatgggcctcatcctcccgttggtaaaactggggcaaagtacattataagg
gaagatggacagagacttgatcttcgttatttgaaaaaaagcagtgatcatcatttagag
cttggatataaggtagagagacacttgaatgatggtgactttgtccttttcaaccgtcaa
ccaagtcttcacaaaatgtctatcatggggcatagaatcaagattatgccttactcaacc
tttcgtctgaacttatctgtaacttcaccatacaatgctgattttgatggggatgagatg
aacatgcatgttcctcagtcatttgagacgagggcagaagttttggagctcatgatggtt
cctaagtgcatcgtgtcacctcagtctaataggcctgttatgggtattgtccaggacaca
ctcttagggtgccggaaaatcaccaaaagagatacgtttatagagaaggatgtcttcatg
aacatcttgatgtggtgggaggattttgatggaaaagtacctgctcctacaattttgaag
cctagacctctctggactggaaaacaagtcttcaatctcattattccgaagcagattaat
ctcttgagaacctcagcgtggcattcagagaatgaaactggttttataacaccaggagat
acccaggttagaatagagaggggggagcttctcacaggtactctgtgcaagaaggccctt
ggaacatctactggaagtcttattcatgtcatctgggaagaagttggtcctgatgctgct
cgtaagttcttgggtcacactcagtggcttgttaactactggcttttacagaatggtttt
agcattggaattggagacacgatcgctgacgcctcgaccatggagaaaattaacgataca
atttcaaaagcgaaaaatgaagtcaaagatcttatcagaatggcccaggagaagagttta
gaacctgaacctgggcgaactatgatggaatcgttcgagaacagagtgaatcaggtgttg
aacaaagctcgtgacgatgctggaagtagtgctcagaagagtttgtctgagagtaataat
ctcaaggctatggttacagcaggatcaaaaggaagttttattaacatatcacagatgact
gcttgtgtcggacagcagaatgtagaggggaagcggattccttacggattcattgatcga
acactacctcattttactaaggatgactatgggcctgaaagtcgtgggtttgtggagaat
tcatacttgcggggtctgactccacaagagttcttttttcacgctatgggaggtagagaa
ggtctgattgatactgccgtgaaaacttctgagacggggtatatccagaggcgtcttgtg
aaggctatggaggacattatggtcaaatatgatggcactgtccggaattctttaggagat
gtcattcaatttctttatggagaggatggtatggatgctgtttggatcgagtctcagaag
ctggactccttgaaaatgaagaaacccgagtttgataaggtttataggtttgagtttgat
gatgacaattggactccaaattacatgcaatcagattatgttgaagatctgaaaaatatt
agagagttccgtcatgtgtttgacgcagaagttaagaaattggcagatgatcggctccag
cttggaactgagatcactaccactggtgacaattcttggcccatgcctgtgaacttaagg
aggctcatttggaacgcacaaaagacctttaaggttgacccgagaaggccttctgatatg
caccccatggagattgtggaagctattgataaacttcaggaaaggcttaaagttgttcct
ggtgatgattcaatgagtatggaggctcagaagaatgctaccctgttcttcaacattttg
ctgcgtagcacttttgcgagtaagagggtgttgaaagaacaccacctgacacgtgaagca
tttgattgggttattggtgaagttgagtctcgttttttacagtcattagttgctcccggt
gaaatgattggttgtgttgcagcacagtctattggcgaacctgctactcagatgactctt
aacacctttcactatgctggagtgagtgcgaagaatgtgaccctcggtgttcccaggtta
agagaaattattaacgttgccaagaaaatcaaaacaccatctctctctgtttatctgaaa
cccgaggttaataagacaaaagaaagggctaagaatgttcagtgtgctctggaatacact
actttgcgtagtgtaactcaagctactgaggtatggtatgatccagatccaatgggcacc
attattgaagaagatattgattttgtcaagtcctactatgaaatgcccgatgaagaggtt
gcaccagagaaaatttctccctggcttcttaggattgagttaaatcgtgaaatgatggtg
gacaaaaaattgagcatggccgacattgcagaaaaaatcaacctcgagtttgatgatgac
ttgacctgtatatttaatgacgacaatgcggaaaaactgatcctccgtatccgtatcatg
aatgatgaggctcccaaaggggagtcactggatgaatctgcggaagatgacgttttcctc
aagaagattgagagtaacatgttgaccgaaatggcccttagaggaataccagatatcaat
aaggttttcatcaagagcgggaaagttaacaggtttgatgaggatgaaggattcaagcca
gaggttgagtggatgctggatactgaaggtgttaatttgttggctgttatgtgccatgaa
gatgttgatgccacaaggactacgagtaaccacttaattgaagtgatagaggttcttggt
attgaggcagttcgtcgatccctcttggatgagttgcgagtcgttatttcatttgatgga
tcttatgtcaactataggcacttggctatcttatgtgacaccatgacgtacaggggtcat
ttgatggccatcacccgtcatggtatcaataggaatgataccgggccaatgatgagatgc
tcatttgaagaaacggttgacattcttttggatgctgccgtgtatgctgaaacagatcat
ctgagaggagttactgaaaacatcatgcttggtcagcttgcgccaattgggactggagat
tgttccttgtacctgaatgatcaaatgctacagcaagctattgagcttcaattgccaagt
tatatggaaggtctggattttggcatgacgccttctcgttcgccaatcatgggaacccca
tatcacgagggaatgatgtcaccaaattacttgctgagccctaatgctcgctcctcgcca
atatcagatgctcagttttctccatatgttggcgggatggcattctctcctactttatct
ccggggtacagtccatcatctccaggctacagcccgtcatctcctggatacagcccaacc
tctcctggatacagtccgacctctcctggatacagcccgacttctcctggatacagcccg
acctctcctacatacagccccagctctcctggttacagtccaacaagtcctgcatattct
ccaaccagcccatcttattcccccacatcaccaagttatagccccacttccccgagctat
agccccacttctccaagttacagccccacttccccaagctatagccccacttcccccagc
tacagccccacttctccggcttacagccccacttcccccgcttacagccctacctctcca
gtctatagccctacctctccatcatacagtcctacgtcaccatcatatagccccacctcg
ccgtcctacagccccacctcgccgtcctacagccccacctcgccatcctacagccccacc
tcgccatcatacagccccacctctcctgcatacagtccgacgtctcctgggtacagtccg
acatctccgagctacagtcccacatctcccagctacagtcccacatctcctagttatcat
ccttcatcggcaaagtacagtccatctttggcatactctccaagcagtccaagaatatca
ccgtctagcccatacagtcatacatctccaaattacagtccaacatcaccgtcgtactca
ccgacttctccatcttactctcctccaagtccaacatacagtcccagcagtcctggtgcg
aacccggactatagccctagttccccacagtttagtccgagtgcgggatattcaccaacg
gctccgggctactcaccgtcatccaccagtcagttcactccagagacgagcaacaaggat
gatggaagcacacgttaa
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integrated database retrieval system
