KEGG   Papaver somniferum (opium poppy): 113304337
Entry
113304337         CDS       T05758                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113304337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psom03021]
    113304337
Enzymes [BR:psom01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     113304337
Transcription machinery [BR:psom03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     113304337
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_7
Other DBs
NCBI-GeneID: 113304337
NCBI-ProteinID: XP_026409205
LinkDB
Position
8:complement(11972402..11985157)
AA seq 1493 aa
MDKDVILEQPTGVLTGIKFSLLTEEDLEKHSAVSVESVNDVTDPKMGVPNMSSECTTCGA
KDIKTCEGHNGIVKLPIDLFHPFFTSEIAQILNQVCPGCKSVRTKGPSSMTETSASPYYA
QQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISEIIVEVTDKIPRKYFSKGLELPMDY
WDFIMKDPQQVETDYKSHRRSLTPLQVCNILKDVDPNFIKSIVPKRILLFLSAILVTPNC
GRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCLSVSKLNTGKSSNNK
LDSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIA
ERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRPLEE
GDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQSIDS
RVELRELVTLNQQLVNGQNGQSLLSVSHDSLAAAYLLRKDDVYLNKAQIQQLEMLSLHLP
PFPAIVKAPTPEMKEDEACLHQRPIEQLEMLASHHFRSPAIVKAPNFQRSMWTGKQLLSM
LMPQDFNFDFPVNGICISEGEILSSSLESAWLQDTDDSIYSTLVRNYGDKTLDILFSAQE
ILLEWISMRGFSVSLSDIYLSSNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTCMENL
LRDSEDTHNCETFEVDDIDKRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSMLAMVRS
GSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDFDTPGSHILYAVIENSFL
SGLDPLECYVHSVSNRDSSFGENAEIPGTLFRKIMFYMRDLYLAYDGTVRNAYGNQLVQF
SYGVSDKVTSTEDEISCQISTGSDRRCGGEPVGSLAACSISEAAYSALDKPLSSVEDSLL
LKLKKLLMSSKTKTAEVQNVTLFLSKKLKRLNYGSEYGAIAVKSHLEKVLFSEVISDTAI
VFSEENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNLSKQKFELPVMHLD
SRSHCSMAGSETSCIVGSVDIEEACSNQLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWND
LPRGSRTSSSGEMCLRVSMARKFKNFKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAY
GIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQTSTPSPF
NQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKKVPVGTGGNFEIIYSQKDDQVDKLD
IFNTLSTQPIYKDAQKASPKKGDKWDNYSFADGFAIPATPVKSESIPKAVGNASPSENDI
LDMVFQLQNILYKYPVGHSLSEDEISTMICALSYHPRGNEKVGSGLREIKVGYHPKYNSR
CFNVVRTDGSIEDFSYRKCVFEAAKRISIHCAESIMKRFKNDNNNSYLVQEHN
NT seq 4482 nt   +upstreamnt  +downstreamnt
atggataaggacgtgattctagagcagcctactggtgtcttgactggcataaagtttagt
cttttgactgaagaagacttggaaaagcactccgccgtctcagtagaatctgtgaatgat
gttacagatcctaagatgggggtaccaaatatgtcatccgagtgtacaacatgcggggcc
aaagacataaaaacctgtgaaggacataatgggattgttaaattgccaatagatcttttc
catcccttcttcacttcagaaattgcgcaaattctgaatcaagtctgtccgggttgcaag
tccgtcaggacgaagggcccgagctcaatgacagaaacttcagcttccccatattatgct
caacaatttacgtgcaaatattgtgttaaaagctcaactgattggtatcctaaaatgaag
tttaaagctgcgggtgcgagagattattttggaaagaatatttcagaaattattgtagaa
gtgacagacaagattcctaggaagtacttcagtaagggtcttgaactgccaatggattac
tgggattttattatgaaagacccgcaacaagtagaaactgattataaatcccacagaaga
tctctgacaccattacaggtttgtaatatattaaaggatgttgatccgaacttcatcaaa
agcattgttccaaagcgtatattgctttttctttctgcaatattagttacacccaattgt
ggccgcgtggtggagatggccaatctactcactactgggcagagtatgatttttgatgat
cgtaccaaagcttacaaacggcttgttgattttaaaagaagtgctaatgaacttggctcc
cgcgtggccgactgcttaagtgtttccaagctaaacactggaaagtcgtccaacaataaa
ttagattctttcaacaataaatttgattttccaaacaagaaaccagattcttctaaaact
ggtcatcaatgggttaaagatgttatgcttggcaagatgacggataattctttccgtatg
gttattgttggtgacccgaggattaaattgggtgaaattggtataccaaatgatattgca
gaaaggttggaggttactgagtgcctaaactcgtggaattggcaaaagttaaatatgtgt
gccaattcccgtcttctggaaaaaggagtccttattgtaaggagaaagggtaaaaaggct
tgcgtgttcaagacggacgatctgaaaattggtgacgctgtctataggcctttagaagaa
ggcgatcttgtgatgattaatcgacctccatctttgcatcaacactctataattgcttta
tctgttaagatcctgccgacaggctcggttgcttccttaaacccacttatatgtgatcct
ctccgtggggattttgatggtgattgtcttcaatgttatgttccacaatccattgactcc
agggtggagttgagggagcttgttactttaaaccagcaactagtaaatggacaaaatgga
cagagcctactttcggtgagtcatgatagcttagctgctgcttatttgctaaggaaagat
gatgtttacttgaataaagcacaaattcagcagttagaaatgttgtctcttcatcttccc
ccctttcctgccattgtgaaagcacccacacccgaaatgaaggaggatgaagcatgcttg
catcagcgacccatcgagcagttagaaatgttggcttctcatcattttcgctctcctgct
attgttaaagcacccaattttcagagatctatgtggactggtaagcagctactgagcatg
ttaatgccgcaagactttaattttgattttccagtgaatggtatctgcatatctgaggga
gagatactatcttcttcactggagtctgcttggctgcaagatacggatgatagcatttac
tctactctggtcaggaattatggggataaaactcttgacatcctgttttctgctcaggag
atattgttggaatggatatcaatgaggggttttagtgtttctttgtcagatatataccta
tcttctaattcatgctccagaggaaatatggttgaggaagtgagcatgggtttacaagaa
gctacccaagcatttcgaaccaaggactttctgataaatcgtacgtgtatggagaatctt
ctgagagatagtgaagacacccataattgtgaaacttttgaagtggatgatatcgacaaa
aggttatatgacttgaccgaaataaacattggtgcatatcaggatgtctttcgtgatgtc
caaaggctggtgtaccattatgcatcgaaggaaaactcgatgcttgctatggttagatcg
ggaagcaagggtagtttactgaaattagttcaccaaagcctgtgtcttggtttacaacat
tcgagtgctccattatcttttagagtgcccagcatgctttcatgttctgcaaggaatcat
agagattttgatactcctggatcccacattctttacgccgtgattgaaaattctttcctc
agtggcttggaccctttagaatgttatgtgcattcggtgtcaaatcgggatagttctttt
ggagaaaatgctgagattcctggaactttgtttcgaaagattatgttctacatgcgtgat
ttataccttgcgtatgatgggacggttaggaatgcatatggaaaccagcttgtccaattc
tcttatggtgtatctgataaggttacatccactgaggatgagatatcttgccagattagt
actggcagtgacagaagatgtggcggcgaacctgtgggctcgttggctgcatgctccatt
tctgaagcagcatatagcgccttagataagccactttctagtgtggaagattctttattg
ctgaagctaaagaaattattgatgtcttcaaagacgaagacagcggaggtccagaatgta
acactgtttctgtctaagaaactaaaaagattgaattatggatctgagtatggagccata
gcagttaagagtcatctggagaaagttcttttttcagaagttatttctgacactgcaatt
gttttttctgaagaaaattgtcagacccatcttagtccatggatctgccactttcacatt
agcaaggaagagatgcagaagaaagggctgaatgttgcatctatatcgagtgctctcgaa
aagaattgttgctctaacttgagcaaacagaagtttgaactgccagtcatgcatcttgat
agcagaagtcattgctcgatggctggttcagaaaccagttgtattgtggggtctgttgac
atcgaagaggcttgttccaaccaattggctggtgttcgtgacgtgatgatgccatttttg
cttgggacggtcatcaaagggttcgtggaggttgagaaagtagatatcgtgtggaatgat
ttgcccaggggatctcgtacaagttcttctggtgaaatgtgtctaagagtttccatggcc
agaaaattcaagaacttcaagttctggagtattattaagaatgcctgtctccccattatg
gatctaatcgattgggaacgcagttatccgaacagcatcaatgatgtatctcatgcctat
gggatagaggctgcatgggcacactttttcagaagtttgaagtctgtaacatctgatata
ggaaagagtattcttgaagaacatctgctcctcattgcagatcgtttgtcttttacaggg
gagtttctcggtttaactgccaaaggattaataactcagacatccaccccatctccattt
aatcaagcatgcttcagtagacctctcttcaatttcgtccaagctgcaaaggatgaagct
aaagatgatctttcagggaccctagacgcagttgcatggggcaagaaagttcccgttggc
actggtggcaactttgagattatttattcgcaaaaggatgaccaagttgacaaactggat
atctttaatacgttatctacccaaccgatttataaagacgcgcaaaaggcgtcccctaaa
aaaggtgacaaatgggataactattcatttgcagatggatttgcaatcccagctacgccc
gttaagtcagaaagcatcccaaaggcagttggtaacgcttctccttcagaaaatgacata
ttagacatggtctttcaattgcagaacatcttgtacaagtatccggttgggcattctttg
agtgaagacgagatatccacaatgatttgtgctttgagttatcaccctcgaggaaatgag
aaggtgggatctggacttcgtgaaattaaggttggttaccatccgaagtataattctcgc
tgtttcaatgtagtaagaactgacggtagcattgaagatttctcgtaccgaaagtgtgtt
ttcgaagcagcaaaacgaatttctattcattgtgctgaatcgataatgaaacggtttaag
aatgataacaacaacagttacctggtgcaagagcacaattga

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