Papaver somniferum (opium poppy): 113308046
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Entry
113308046 CDS
T05758
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113308046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113308046
Enzymes [BR:
psom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113308046
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
113308046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
113308046
NCBI-ProteinID:
XP_026412301
LinkDB
All DBs
Position
9:complement(78230311..78242795)
Genome browser
AA seq
1652 aa
AA seq
DB search
MTTTEGATEAVEFVSFSFLTDEEVRKMSRKKVTCPILYNNLDVAYPNGLYDPAMGPLEDK
GLCGSCGQTYFECSGHCGHIDLAVPVYNPLLVRTLFQLLERTCFFCKHFRIEKEKVQKCV
AQLELIKKGDITGAKNLDMAECSAWEESDSDQTACTTKPSEVSYNNSQSSEQHHWTSLQY
SEAMSVLDGLLGSKPSACRRCSAKNPRISCPTFGWFYMNMSKASTRANVIQGVELNESFD
DGAEQDVIGEVRHSGVSDSEDVESAGSVYNRTLSPGKKSRNKGVSGPPSEYLKQSNFFSG
VLLPSEAKDHMKLVWENENQICSLICDIQQQGMTQKRSSYSMFFIEALLVAPVKFRPPSK
GAMVSDHPQTVLLGKVLESNIKLANAHMNSSEDTRFVTQWRELQKNVNVLYDSKAVKGGA
KDSAANGGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYLAVNEIGIPPCFALNLTY
PERVTPWNVNKLKEAILTGGEEHPGATHYVDKYSSVKLPKAKQKRFAYARKLPTSRGVLT
QTGRSVEQELEGKVVYRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS
VYNADFDGDEMNVHFPQDEISRAEGYHIVNANNQYLVPTSGEPKRGLIQDHIISAVLLTK
KDTFFTRDEYNYLLYSSGVSAAVRNSSSGASRKKIYMINSEDELEGAPPAIWKPEPLWTG
KQVISSILQHITRTRGLAPFTIEKSGKVPSEYFGDSSGEFMLRIHKNELVHGVIDKNQFE
KHGLVHTVQELYGSNVAGILLSVLSRLFTLYLQMHGFTCGVDDLLIIPDVETKRTSILEK
SEEIGKKVHCQFVGSADGDIDPTTLQAETEKTIRNNAESATTRLDRMMSSALNGTTSQVN
KELFPKGLQKPFPKNCLSLMTTTGAKGGLVNFTQISSLLGQQELEGKRVPRMVSGKTLPC
FHPWDPASRAGGFISDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE
CLKVGYDHTVRDSDGSIVQFCYGEDGVDVHKTSFISEFNILAANQEVVLDKLGGGCEDAL
VMKFNNYIKHMPEPLEGKINEFISSLSKKQRASLQLRKKDFLKLMKLKYFRSLAQPGEPV
GVLAAQSVGEPSTQMTLNTFHLAGQGEMNVTLGVPRLQEILMRASEKIQTPVMTCPLRKG
KTRDDADRLAAKLKKVTVADIIEKIEVNVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMD
ITLEDCMQTLDVLFVRELEDSIENHLIMVFKVSGITNMGRESEVVNEEEKEKEEDKDDSS
KQSHNTGEETDDDDEGDANDIEAEDLGVDAQKRKEQATDEMDYGEDGMETETSLVENVDA
EGSESESESDDVGNKENDQGTDGEPQILDAEEEPKSVPASKSSDKREPGSAAKPKKVAKA
RRTKKESDRVFFVEAKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVID
HNRDAKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGV
FDAYGIKVNIRHLTLIADYMTQTGAIRPFSRYGIASSTSPFSKMSFETAAKFIVDAAYHG
EVDDLESPSARICLGLPVKVGTGSFDLLQQVF
NT seq
4959 nt
NT seq
+upstream
nt +downstream
nt
atgactactacagagggtgctacggaggcagtagagtttgttagtttcagctttttaaca
gatgaagaggttagaaaaatgagtaggaagaaggttacatgccccattctttataataac
ctggacgtagcttatcccaatggcttgtatgatcctgcaatgggacccttagaggataaa
ggactttgtggatcatgtggccagacttattttgagtgctccggtcattgtggccatatt
gaccttgcggtaccagtctacaatcccctgttagtcaggactctcttccaactgctcgaa
aggacttgcttcttttgcaaacattttaggatagaaaaggaaaaggttcaaaagtgtgtt
gcccaacttgaacttattaagaagggtgatattaccggggccaaaaacttagatatggct
gagtgttctgcatgggaggaaagtgattctgaccagacagcatgcaccaccaagccatcc
gaggtgagttataacaacagtcagagttccgagcagcaccactggacgtcacttcaatat
tctgaggctatgtccgtactggacggtttgttggggtctaagccaagtgcatgccgtagg
tgttctgcaaaaaatcccagaatcagttgtccaacttttggttggttctacatgaacatg
tcaaaagcttctactcgagcaaatgttatacaaggagttgagctgaacgaatcattcgat
gatggagctgaacaagatgtgattggagaggtaaggcattctggtgtttcagattccgag
gacgtggaatcagctggatctgtctataatagaacactgagtcctggtaaaaaatcaaga
aacaaaggagtgtctggacctccttccgaataccttaagcaaagcaatttcttttcgggt
gtcctcttaccatcagaggcgaaagatcatatgaagctcgtgtgggaaaatgagaatcaa
atctgttccctcatttgtgacattcagcaacaaggaatgactcagaagagaagtagttac
tctatgttcttcatcgaagcccttttagtagctccagtcaagttccgacccccctctaag
ggtgctatggtgtccgatcatccccaaactgtgttgttgggtaaagtgttagagtccaac
atcaaattagccaatgcacacatgaatagctcagaagacactcgatttgttactcaatgg
agggaacttcaaaaaaatgtaaatgtcttatatgatagcaaggctgtcaaaggaggtgcc
aaggatagtgcggctaatggaggaatatgtcagctgctggagaagaaggagggtcttttt
cggcaaaaaatgatgggaaaaagggtcaatcatgcatgtcggtctgtcatttctccagat
ccctatttagcagtcaatgaaattggaattcctccttgctttgcactgaatttgacgtat
ccagagagagtgacgccttggaatgttaacaaactgaaggaggctatcctcaccggcggt
gaggaacatcccggagctacacactacgtagataagtattcaagtgttaaattgccaaaa
gctaagcaaaagcgatttgcatatgcaaggaagttacccacttcgagaggagtccttaca
caaactggcaggagtgttgagcaagaacttgaaggaaaggtggtgtaccgccatttacga
gatggagatatagtgctcgtcaatcgacagccaacacttcacaaaccaagtattatggct
catgttgtccgtgttctgaaaggggagaaaacactacgtatgcattacgcaaattgcagt
gtttacaatgctgattttgatggcgatgaaatgaatgttcatttccctcaagatgaaatt
tcacgtgcagaaggttaccatattgtgaatgcaaataaccaataccttgttccaacaagc
ggtgaaccgaaaaggggtttaattcaggaccatatcataagtgctgtacttctcaccaag
aaggacacgttttttactcgagatgagtacaactaccttctttacagttctggggtgtct
gctgctgttcgaaattcatctagtggtgcatctcgcaaaaaaatatatatgataaattct
gaagatgagttagaaggcgctccacctgctatttggaaaccagagccgctgtggacaggg
aaacaggtcataagctcaatattacaacatattactcgaaccagaggactcgctcctttt
accattgaaaagtctgggaaggtaccatctgaatattttggagactcaagtggagaattc
atgctgcgcattcacaaaaacgagttggtgcacggggtgattgacaagaatcagtttgaa
aagcatggcttggttcatactgtccaagagctctatggttcgaatgtagcagggattttg
ctttctgttctaagtcgattgtttactctgtatttgcagatgcatggtttcacttgtgga
gtggatgaccttcttataatacctgatgtggaaacaaaaaggacgagtatacttgaaaaa
agtgaagaaattgggaaaaaggtccattgtcagtttgttggttctgccgatggagatata
gatccaacgacgttacaagcagagaccgaaaaaactatacgaaataatgctgaatctgca
acaacccgcttagataggatgatgtccagtgctctcaacgggacaacctcacaggtgaac
aaggagttgtttccaaaggggttacagaaacccttcccaaagaactgtctttcccttatg
actacaactggagcaaaaggtggtttggttaactttacacagatatcctctttgttaggc
caacaagagctagaaggtaaacgagttcctagaatggtttctggtaagactttgccttgc
tttcacccgtgggatcctgcatcacgggctggaggctttatcagtgatcgttttctgacc
ggtcttcgccctcaagaatattacttccattgcatggctggtcgtgaggggttagttgat
acagcagtcaaaacttctcgcagtggatacctgcagagatgccttataaagaatctcgag
tgtctaaaagtcggttatgatcacactgtccgtgactctgatggatctattgtccagttc
tgttatggggaagatggtgtggatgtccataagactagcttcatttctgaattcaatata
cttgctgctaatcaggaggttgtgcttgataagcttggtggtggctgcgaagatgccctc
gtaatgaaattcaataattatattaagcacatgccagagccccttgaagggaaaataaat
gagtttatatctagtttgtcgaagaagcagagggcatctctacagctcaggaaaaaggac
tttttaaagttaatgaagcttaagtactttagaagtcttgctcagccaggagaacctgtt
ggtgttctcgctgctcagtccgtaggagagccatctactcagatgactctcaatactttc
catcttgccggtcaaggtgaaatgaacgtcactctgggtgtccctcggttgcaagaaatt
ctaatgagggcttctgagaaaatccagactcctgttatgacctgccccttgcggaagggg
aagacaagagatgatgctgatcgcctggctgcaaagttaaagaaggtgacagtagctgac
ataattgagaaaattgaggtcaacgttgtgcccttttctgtttataaacagcaggtcaca
actgtttttaagctgaagatcaaggtctttggacctgaacatttcccaccctatatggat
attacacttgaagactgtatgcagaccttagatgttttatttgtgagggagttggaagac
tctatagaaaatcatttgatcatggtattcaaagtcagtggcattacaaatatgggtcgg
gaatctgaagttgtgaatgaggaagagaaagagaaagaggaagataaggatgattctagt
aagcaatcacataatacaggggaagaaactgatgacgacgatgaaggggatgccaatgat
atcgaagcagaagatcttggtgttgatgcacagaaaagaaaagaacaagctacagatgag
atggattatggcgaagatgggatggaaacggagacttcacttgttgagaatgtagatgct
gaaggctcggaaagtgaaagtgaaagtgatgatgttgggaataaagaaaatgaccaaggt
acggatggcgaacctcagatacttgatgctgaggaagaaccaaaatctgtaccagcatca
aagtcatcagacaagagggaaccaggatctgcagccaaaccgaaaaaggtggccaaagca
aggcggacgaaaaaggaatccgatagagtattctttgtagaagctaaggggttggatttt
gaagtccatttgagatttaccgatgaacctcatattatactatctaaggttgtcgaaaag
gcagcaaagaacgtctacataaaaagatcaggaaacatagagcgatgctctgttatcgac
cacaacagagatgctaaactcgcagcactacagacagccggagtagatttcggtgctttc
tgggacatgatagatgatcttgacatcaatcatattgtctcaaatgatatgcacacagtt
cttcgaacatacggagtggaagccgctagagctacaattataaatgaagtgaaaggtgtt
tttgacgcatatgggattaaagtcaacatccgacacctaactctgattgccgattacatg
acccagacaggtgcaatacgtcctttcagtaggtatggaattgccagctctacctcacct
tttagtaaaatgtcctttgagacggcagcaaaattcattgttgatgctgcatatcacggc
gaggttgacgatttagagtcgccatcagcaaggatttgccttggtttgcctgtaaaagta
ggaacaggcagttttgatttgttacaacaggtattttga
DBGET
integrated database retrieval system
