Papaver somniferum (opium poppy): 113346891
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Entry
113346891 CDS
T05758
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113346891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113346891
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113346891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
113346891
NCBI-ProteinID:
XP_026446226
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Position
2:10662247..10671116
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AA seq
1334 aa
AA seq
DB search
MAPSRRLSNGRSPLVNKQSQITAFFTPGKSNTSVSPSSAPSVKQNSKSTPPNPKSIPPKP
KSSDSKKPLLVIGYDDHPSPSTPASNLSSIKTPESGKRLYGESVVRKRIRVYWPIDKQWY
DGFVKSFDSLSGKHLIQYDDSEEEELDLEKEKIEWVEEEKKTTFRRLKRNLASENVVLDV
VEKEEVKSSSGRSPRGLKMVVVEDDEEEEGGSGGDDSEDEDWGKNVEKEIIDDEMEEMDL
VEEEEVNEEVESKSKRGCNSEPRKRKKLETEKLGSDKKCKTEGNIGKAVSKISQTGNASG
LFGLAVNLEREHFTPNTENVLTGDIAERFGNREVEKFCFLGKDRRDAKRRRPGDVDYDPN
TLYLPPDFVNNLTGGQRQWWEFKAKHMDKVLFFKMGKFYELYEMDAHVGTKELDLQYMKG
EQPHCGFPEKNFSMNAEKLARKGYRVLVVEQTETPDQLELRRKKGSKDKVVKREICAVVT
KGTLTEGEMLTIKPDASYMISVTEGFIASENQKDLLVIGVCIVDVSTSRFMLGKFADDSE
RNSLGSLLSELRPVEIIKPAKLLSSESEKVLLTHTRSPLVNELVPLLEFWSAEKTVAEVR
SIYRRHKDQPVTSKKHIEDSDTNIEDGGSNDLPSVLSGLVNDGERGSYAVSAFGGCLSYL
RKAFLDQSLLKCAKFELLPCSQFRDIPQKPYMILDAAAIENLELFENTRDGSSTGTLYGQ
LNQCVTSFGKRMLKNWLVRPLYLAESIRERQDAVAGCRGDALPHVLEFRKELSKLPDMER
LLGRLFSRSEANGRNANKVVLYEDEAKRQLKEFISALRGCELMTCACSSLSAKLDDVDSS
LLKRLLTPGKDLPDLSQVLKHFKEAFDWIEADQSGRIIPHVGADSEYDSACEVVKEIESK
LERHLKEQQKVIRDASIKYVIVGKDTYLLEIPESLQGRVPQNYELRSSKKGVRRYWTPDI
KKLLGELSQAESEKESKLKSILQRLIGCFCEHHIRWRQLVSAIAELDVLISLAIVSDYYE
GPTCRPTIIDSPSSSEVPRLCAKSLGHPVRTSDSLGKGAFVPNDVNLGGPGCPSFILLTG
PNMGGKSTLIRQVCIAVILAQLGADVPAEYFEISPVDRIFVRMGAKDHIMSGQSTFLTEL
SETASMLSSATSKSLVALDELGRGTSTSDGQAIAESVLDHFVHKVHCRGLFSTHYHRLAV
DYERDPQVSLCHMGCRVGKESGGVEEVTFLYKLTPGACPKSYGVNVARLAGTPDSVLQKA
AAMSKEFEKVYGKKKLKPTGESSSCNKDENFASLIKELGHFLANFSCPGDSEVKKMPLLC
ELQQTARRLLLQEH
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggctccttcacgtcgtctcagcaatggtagatctccattagtaaacaaacaaagtcaa
atcactgccttcttcactcccggtaagtctaatacttcagtttccccttcttctgctcct
tctgttaaacaaaactctaaatctactccgccaaaccctaaatctattcccccgaaacct
aaatccagtgattcaaagaaaccccttttagtaattggttatgatgatcatccatctcca
tcaacacctgcttcaaatctaagcagcattaaaacacctgaatctggtaagagattgtat
ggagaaagtgtcgtacggaaaagaattagggtttactggcctatagataagcaatggtat
gatgggtttgttaaatcatttgatagtctgagtggtaaacatttgattcagtatgatgat
tctgaagaagaggaattagatttagagaaagagaagattgaatgggtagaagaagaaaaa
aagactacatttcgtcgcttgaaaaggaatttggcttctgaaaatgttgttttggatgtt
gttgaaaaagaggaggtgaaaagtagttctgggaggtcaccacggggtttgaagatggtg
gtggtggaggatgacgaggaggaggaagggggaagtggaggggatgattcagaagacgag
gattggggaaagaatgttgagaaagagataattgatgatgaaatggaagagatggatttg
gtggaggaggaagaggtaaatgaggaagtagaaagtaaatctaagagagggtgtaattca
gagcctagaaagcgaaagaagttggaaacggagaaattaggttctgacaagaagtgcaaa
actgaggggaatattggtaaagctgtatcaaagatatctcagactgggaatgccagtgga
ttatttgggctagcagttaatctggagagagagcattttactccaaacacggaaaatgtt
ttaacaggtgatattgctgagcgatttggcaaccgtgaagtggaaaagttttgcttcctt
gggaaagatcgtagggatgctaaaaggagacgtcctggagatgttgattatgatccaaac
actctttacttgcctcctgattttgttaacaatttgacaggtggccagaggcaatggtgg
gaattcaaggcgaagcatatggacaaggtcttgtttttcaagatgggtaaattctacgaa
ctgtatgaaatggatgcacatgtaggaacaaaagaacttgatttgcaatacatgaaggga
gaacaacctcattgtggatttccagagaagaatttctcaatgaatgcggaaaaattggct
agaaagggctatcgggtgctggttgtagagcagacagaaacacctgatcagcttgaatta
cgtcgcaagaagggttccaaagataaggtagtaaaacgcgaaatatgtgcagtcgttact
aagggtacattgacagagggagaaatgttgacaataaagcctgatgcttcatacatgatt
tcagttacagaaggtttcattgcatctgagaaccaaaaggatctcttagttattggtgtt
tgtattgttgatgtttctacgagcaggtttatgcttgggaagttcgctgatgattcagaa
cgtaattcactgggttccctattgtctgagttaaggcccgtagaaatcataaagcctgct
aaacttctcagttctgaaagtgagaaagttttgttgacacatacgagaagtcctttggtc
aatgagttagttccactcttggagttctggagtgctgaaaaaacagttgccgaagtcaga
agtatatacagacgtcacaaggatcaacctgtaacatcgaagaaacatatagaagattcc
gatactaatattgaagatggtggttcaaatgatttacccagtgttctctctgggctagtg
aatgatggggagcgtggaagttatgcagtttctgcatttggtggttgcctttcctatttg
cgaaaggcttttctggatcaatcactgcttaaatgtgctaagtttgaattattaccgtgc
tcccaatttcgcgatatccctcaaaaaccttatatgattcttgatgcagctgcaattgag
aacctggagttatttgagaacaccagagatggaagttctaccgggacactatatggtcaa
ctgaatcaatgtgtcacatcatttgggaaacggatgttgaaaaattggcttgtgagacca
ctgtatttggcagagtccatcagggaacgtcaggatgctgtagctggttgtagaggagat
gctttaccccatgtgcttgaattccggaaagagttgtccaagcttccagatatggagcga
ttgttgggacgcctcttttctaggagtgaagctaatggaaggaatgcgaataaagtggtt
ctttatgaggacgaagcaaagagacagcttaaagagttcatctctgctttacgcggttgt
gaattaatgacctgtgcatgctcttctcttagtgcaaagttagatgatgtggattctagt
ttgctcaagcgattattgacacctggtaaagatcttcctgacctgagtcaagttctaaag
catttcaaggaagcctttgattggatagaagctgatcagtcgggacgtatcatacctcat
gttggagctgattcagaatatgactctgcatgtgaagtcgttaaggaaatcgaatctaaa
ctggaaagacatctaaaggagcaacaaaaagttattcgggatgcatctatcaagtacgtt
attgttgggaaagacacataccttctagaaatacctgagagtttgcaagggcgagttcct
cagaactatgaattacgatcttcaaaaaagggggttaggaggtattggactcctgatatt
aagaagctattaggggagctttctcaagctgaatctgagaaggaatctaaattgaaaagc
attttgcagaggttgatcggatgtttttgtgagcatcacattaggtggaggcaattggtc
tctgcaattgctgaattggatgttctgatcagcttggccattgttagcgactactacgaa
ggacccacgtgtcgtccaactatcatagattcaccatcctctagtgaagtgccacggttg
tgcgccaaaagtttaggacatcctgtccggacaagtgactctctaggcaaaggtgcattt
gttcccaatgatgtaaaccttggtggtcctggatgtcccagctttatcttactcactggt
cccaacatgggcgggaagtcaactcttattcgtcaagtttgcattgccgtgattttggct
cagctaggagcagacgtccctgcagagtattttgaaatatccccagttgatcgtatcttt
gttcggatgggtgcaaaagaccatattatgtcaggccagagtacattcttaactgaactt
tcagagactgcatcaatgctgtcttctgcaaccagtaagtcattggttgcgttggatgaa
ctcggacggggtacatcgacttcagatgggcaagccattgcagaatcagttctagatcat
tttgttcacaaagtacattgccgaggcttgttttctactcactatcaccgtttggcagta
gactacgagagagatccccaggtgtctttgtgccatatgggatgtcgagttgggaaggaa
agcggaggtgttgaagaagttacatttttgtacaaactgacacctggtgcatgtcccaag
agttatggtgtcaatgttgcacggctagcaggtactcctgactctgtgctgcagaaagct
gcagcaatgtctaaagagtttgagaaagtatacgggaagaaaaaactcaagccaacaggg
gagtcatcaagttgcaacaaggatgaaaactttgcatcccttatcaaagaactgggccac
tttctagccaacttcagttgccctggagattctgaggtcaagaaaatgcctttgctgtgt
gaacttcaacaaaccgcacggcggttgcttttgcaggaacactag
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