Polyodon spathula (Mississippi paddlefish): 121294327
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Entry
121294327 CDS
T07273
Name
(RefSeq) very long-chain acyl-CoA synthetase-like isoform X1
KO
K08746
solute carrier family 27 (fatty acid transporter), member 2 [EC:6.2.1.-
6.2.1.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03320
PPAR signaling pathway
pspa04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
121294327
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121294327
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pspa01004
]
121294327
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121294327
Enzymes [BR:
pspa01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
121294327
Lipid biosynthesis proteins [BR:
pspa01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
121294327
Transporters [BR:
pspa02000
]
Solute carrier family (SLC)
SLC27: Fatty acid transporter
121294327
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
121294327
NCBI-ProteinID:
XP_041073865
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Position
19:26323194..26336988
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AA seq
619 aa
AA seq
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MYILFTLLASVAILPLLLWSCFPYFVQDVLYIVKCIGCGIRIRRYAKKKPCYLTLEKFLE
VVQKQPNKPLIVFENKTYSYLDADKQSNKFARALQKHAGLKEGDTVALFLGNEPAFIWTW
LGLAKLGCAAALLNYNIRSKSLLHCFSCCGARVLIAAPELKGAVEDVLPSLQEEKVSVFI
LSEESTTPGIESLNDKIHQASDQPLPVSLRSNVTMKSIAVYIYTSGTTGLPKAAVVTQER
LWAGASFLRMNDVLSQDVVYVNLPLYHSAGFMIGFMGSIDLGTTIVLRRKFSASQFWDDC
RKHNVTVIQYIGEVLRYLCNVPKQDGDRDHKVRIAIGNGVRVEVWKEFLNRFGNIQICEF
YASTEGNIGFLNYIGKIGAVGHVNYFHKKLFPFALIQYDTEKEEPVRDSRGLCVPTSKGE
TGLLVSKITKIAPFVGYARNQQQTDKKKLRDVFKKGDLYFNSGDLLMLDQDNFLYFQDRI
GDTFRWKGENVATTEVADVLNLMDCIEEASVYGVKVPDHEGRIGMAAVKLEEAKQLECDK
IYSHVVSYLPSYARPRFLRIQNSLEVTGTFKQMKVKLAEEGFNPAVVWDPLYFLDENEKT
YVPMTQEMYSSIISKHIKL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcctgtttacacttttagcaagcgtggcgattttgcctctgcttctgtggtca
tgttttccctactttgtgcaagatgtgttgtacattgtaaaatgtattggatgtggaatt
cggattcggaggtatgcaaagaaaaagccatgctacttgactttagaaaagtttttggaa
gtggtgcagaagcagccgaacaaacctttgattgtgttcgagaataaaacctattcttac
ctggacgcggataaacaaagcaataaatttgccagagctttacagaagcacgctggcttg
aaagaaggagacactgtggccctgtttttagggaatgaacccgctttcatttggacgtgg
ctaggtctggctaaattaggatgtgctgctgcattgctgaattacaacatcagatcaaaa
tcgttgctgcattgcttctcctgctgcggggctcgtgtgctaatcgctgctccagagctg
aaaggtgctgttgaagatgtgcttccttcactccaagaggagaaagtgtctgtttttatc
ctgagtgaagagtccaccacaccggggatcgaaagccttaatgacaagattcatcaggct
tctgaccagccactaccagtgtctctgaggtccaatgttaccatgaaaagtattgcagta
tatatctacacctctggcaccacaggactcccaaaggctgcagtggtcactcaagagcgg
ctatgggcaggagcttcattcctcagaatgaatgatgttctctctcaggatgtggtctac
gttaatctgcccctctaccacagtgctggcttcatgattggatttatgggttcaatagat
ttgggtacaaccattgttttaaggcgcaagttttcagcctctcagttttgggatgactgt
cggaagcacaatgtaacggttatacagtacatcggagaggtgctgcgctatctctgcaac
gttccaaagcaagacggtgatcgggatcacaaagttcggatagctataggcaatggtgtc
agagtagaggtttggaaagagtttttgaatcgctttggaaatatccaaatctgtgaattt
tatgcctcaactgaggggaacattggctttctcaactacataggaaaaattggcgctgtc
gggcatgttaattacttccacaagaaactcttcccctttgcactgattcaatatgacacc
gagaaagaagagcctgttcgggactccagaggtctttgtgtcccgacttccaaaggtgag
acaggccttctggtatcaaagatcaccaaaatagctcctttcgttggatatgcaagaaac
cagcagcaaactgataagaagaagctgagagacgtcttcaaaaaaggagacctctacttc
aacagcggagacctcctgatgctggaccaggacaacttcctgtactttcaagacaggatt
ggagacacattcaggtggaaaggggagaacgtggccaccacagaagttgctgatgttcta
aacttgatggattgcattgaagaggctagtgtgtatggtgttaaagtaccagatcacgaa
gggcgaataggaatggctgctgtgaagctagaggaggctaaacaacttgagtgtgacaag
atctacagccacgttgtcagctatctgcccagttatgcaagaccgcgttttcttcgaatt
cagaattccttggaggtcactggaacattcaaacagatgaaagtcaaattagcagaagag
ggtttcaatccagctgtagtctgggatccactctactttctggatgaaaatgaaaagaca
tatgtaccgatgacccaggaaatgtacagttccattatttcaaagcacatcaagctataa
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