Polyodon spathula (Mississippi paddlefish): 121300835
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Entry
121300835 CDS
T07273
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B-like
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04020
Calcium signaling pathway
pspa04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121300835
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121300835
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121300835
Ion channels [BR:
pspa04040
]
Ligand-gated channels
Glutamate (ionotropic)
121300835
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GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
121300835
NCBI-ProteinID:
XP_041085690
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Position
26:complement(491118..509670)
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AA seq
740 aa
AA seq
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MPCGKVFEDHLCLSCRFLADTSFTGQTGPVAIGNSSRVLTSPLFHIWSLQRDPLGQPTWV
TVGNWKRGRLVVEQQGFWQGRGLHRKSGMGGGPGSRGVRGDGAWGSSRTRLRVVTLVEHP
FVFTRKVDEDGSCPAGQFCLDPRTNNSETIDRYFRHLSRESNTSIPDDFRKCCYGYCIDL
LEKLAEDLRFDFDLYIVGDGKYGAWKNGRWTGLVGDLMSGAADMAVTSFSINSARSKVMD
FTSPFFSTSLGILVRSKDTAAPIGAFMWPLHWSMWVGIFMALHLTALFLTLYEWKSPYGM
TPHGRNRKKVFSYSSALNLCYAILFGRTVSSKTPKCWTGRFLMNLWAIFCLLVLSSYTAN
LAAVMVGEKTFEELSGIHDAKLHHPSHGFRFGTVWESSAEEYMKKSFPEMHEYMRRFNEP
TTPDGVANLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSLF
TSNVSEFISRYKSDGFMDMLHDKWYKVVPCGKRVFAVTETLQMGINHFSGLFVLLSVGVS
GALLTLAGEHAFYRLILPHIRKRNKFKYWLHTSQKIHRALNMNFEDGKNRNQPKTEKSCN
LQRVQPPPPLAKWNNERNKSAQESRDNKRVHFNLETLNSGRLLAQVVAAGREEAVTKGAR
RPCKNGCSPCSCTSPRNTGLVELESRIEEIRGQLRAALARKSELQFCLAREKECQSAAPL
PLQPTTTEEEKAAKESNADR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgccatgtggaaaagtgtttgaggatcatttgtgtctatcctgcaggttcctggctgac
acctccttcacaggacaaacaggccctgtagccatagggaactcctcccgggtgctgacc
tcccccctcttccacatctggagcctgcagagggacccgctgggccagccgacctgggtg
acggtgggcaactggaagagaggacggctggtggtggagcagcagggcttctggcagggc
aggggtttacacaggaagtcaggaatgggaggggggccagggagccggggggtgagggga
gacggggcctgggggagctctcggacccggctacgtgtcgtcactttggtggagcatccc
ttcgtcttcaccaggaaggtggatgaagatgggagctgcccagctggccagttctgcctt
gaccctcggaccaacaactcagaaaccatagacaggtacttccgacatctttcccgggaa
agtaacacatcaatccctgacgatttccgcaagtgctgctatggctactgcatcgacttg
ctggaaaagctggcggaggacttgagatttgatttcgacctttatatagtcggggatggg
aaatacggagcctggaaaaatggccgttggactgggctggtgggggatcttatgagtggt
gctgcagacatggcggtcaccagtttcagtatcaattcagccaggagcaaagtcatggac
ttcaccagcccattcttctcaactagtttgggcattctggttcggagcaaggatactgcc
gcccccatcggtgccttcatgtggcccctgcattggtcaatgtgggtgggcatcttcatg
gctctccatctgaccgccctcttcctcaccctttacgagtggaagagcccctatgggatg
actccacatgggcggaaccgcaagaaggtcttctcctactcctcagccctcaatctctgc
tacgccatcctgttcggacgcaccgtttccagcaagactcccaagtgctggaccggccgc
ttcctcatgaatctgtgggccatcttctgcctgctggtgctctccagctacacggccaac
ctggctgccgtcatggtgggagagaagaccttcgaggagctgtcaggaatccatgatgcc
aagctgcaccacccctcccatggtttccgctttggtacggtctgggagagcagtgcagag
gagtacatgaagaagagcttccccgagatgcatgagtacatgagacgcttcaatgagccc
accaccccagatggtgttgccaacctcaagacagatccgcctcagctggacgccttcatc
atggacaaggctctgctagactatgaagtgtccatcgatgcagactgcaagctgctcact
gtggggaagccctttgccatcgaaggctatgggatcggccttccccagaactctctcttc
acctccaatgtgtcggagttcatcagccgctacaagtcagatggcttcatggacatgctg
cacgacaagtggtacaaagtggtgccttgtgggaagagggtgttcgctgtcactgagacc
ctgcagatgggaatcaatcacttctcaggcctcttcgtgctgctcagtgtaggggtcagc
ggggctcttctcactctggctggagagcacgccttctaccggctcatcctgcctcacatc
cgcaagaggaacaaattcaagtactggctccacaccagccagaaaatccaccgtgctttg
aacatgaattttgaggatggtaagaaccgaaaccaaccaaaaacggagaaaagttgcaac
cttcagagggtccagccaccccctcccctagccaagtggaacaacgagagaaacaagagt
gcgcaggagagcagggacaacaagcgggtacacttcaacctggagaccctcaacagcggc
cggctcctggctcaggtggtggcggcgggcagggaggaggctgtgacaaagggggcacgg
aggccctgcaagaacggctgctctccctgctcgtgcacctcaccccgaaacactgggctg
gtggagctggagagccgcatcgaggagatccgcgggcagttacgggccgcactggcacgg
aaatcagagctgcagttctgcttggcgagagagaaagagtgccaatcggcagccccactc
cccctccaacccaccaccacagaggaagaaaaagcagctaaagagagcaatgcagacagg
tga
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