Polyodon spathula (Mississippi paddlefish): 121307508
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Entry
121307508 CDS
T07273
Name
(RefSeq) neurogenic locus notch homolog protein 1-like
KO
K02599
Notch 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121307508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
Ank
EGF_2
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
EGF_3
DL-JAG_EGF-like
Motif
Other DBs
NCBI-GeneID:
121307508
NCBI-ProteinID:
XP_041095624
LinkDB
All DBs
Position
56:343006..377818
Genome browser
AA seq
2533 aa
AA seq
DB search
MHHFFVKLIFVISPVALTRGSRCTVLPAESCLNGGRCDSGPGGTGECRCSIDYFGNRCEY
PNPCLSSPCKNAGTCRPFTRGNTIDYTCMCRVGYTDRLCLTPIDNVCLNNPCRNGGTCEL
VSLKEYKCQCPPGWSGETCQQADPCASNPCANGGQCSPFEAHYICNCPSGFHGLSCKQDK
NECALSPSPCQNGGKCVNEFGSYRCECQQQYIGKNCEIPYVPCNPSPCQNGGTCRQTGDT
SYDCTCLPGFAGQNCDKNIDDCPEHKCQNRGTCVDGVNTYNCQCPPEWTGQFCMEDVDEC
QLMPNACQNGGTCHNTHGGYNCVCVNGWTGDDCSENIDDCASAACYLGATCHDRVASFFC
ECPQGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPQGYMGSACNQDVDECSLG
ANPCEHGGKCINTRGSFQCQCLQGYTGPRCELDVNECMSNPCQNDATCLDQIGGFSCICM
PGYEGVFCEINTDECASSPCLNNGKCIDKINTYHCECPTGFTGFLCQVDIDECASTPCKN
GAKCVDGPNKYTCECTEGYSGMYCESDINECDPDPCHYGACKDGIATFTCVCNPGYTGRR
CEIDINECQSQPCQNGGTCQDRNNGYFCNCPKGTTGANCEVNLDDCEKNPCDYGKCIDKI
NGYECACEPGYKGTMCNINIDECASNPCHNGGTCRDGINSFTCVCPEGYHDPTCLSEVNE
CNSNPCIHGSCQDGVNGYKCDCDLGWSGTNCDINNNECESNPCMNGGTCKDMTSGYVCTC
RVGFSGPSCQMNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGANCEDLLAPCASNPCK
NEGVCQESEDYESFSCVCPEGWQGQTCEVDINECVKNPCQNFAPCQNTIGGYRCNCKSGY
SGRNCETDVDDCQPNPCSNDGSCSDGINSFVCTCLPGFRGPVCEEDINECDSNPCKNGAN
CTNCVNSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINTFTCLCPPGFTGSYCQ
HDINECDSKPCLNGGTCQDSYGTYKCTCPQGYNGLNCQSLVRWCDSSPCKNGGTCWQTGT
SYRCECKSGWTGLYCDVPSVSCEVAAKQQGIGVPQLCRNSGQCVDTGNTHYCRCQTGYTG
SYCEEQVDECAPNPCQNGATCIDYLGGYSCQCVPGYQGFNCSEESNECLSQPCMNGGTCI
DLVNTYKCSCPRGTQGVHCEINVDDCNPFVDPVTLEPKCFNNGKCIDRVGGYHCICLAGF
VGEHCEGDVNECLSNPCDPRGTQNCVQLINNYRCECRTGFTGRRCDTVFDGCKGKPCRNG
GTCAVASNTPNGFICRCPSGFDGSTCEYDSRTCGSLRCQNGGKCINGPNAPRCVCPSEFT
GPECQYPVNSPCNSNPCYNGGTCKFLQEAPFYQCTCPTNFNGLWCHILDYKFPGGMGVDI
TPPPEITERCENPECEERKGNKICDRVCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWRY
FNDGKCDEQCNNPGCLYDGFDCQNLDSQCNPLYDQYCKDHYADGHCDQGCNNAECEWDGL
DCTSSPEKLADGRLVLVVQIPPEQLKNNSFGFLRELSRVLHTNVVFRKDEGGEFMIYPYY
GSEQELKKHNIKRSSGSWGEIPSNVFNKMKKSMYTMVNARKRRELDQMQIKGSVVYLEID
NRQCYQQSTECFQSATDVAAFLGALASSGNLNVPYIIEAVTSENRDEEEKRPELYPMYVV
VCALAFLACIGVGVLVSRKRRREHGQLWFPEGFKVTEPSKKKRREPVGEDSVGLKPLKIA
SDLSLMDDNQNEWGDEEPSDTKRFRFEEQAMLNLDDQSDHRQWTQQHLDAADIRIPSIAP
TPPQGEIDIDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDASANVISDFIYQGAI
LHNQTDRTGETALHLAARYARSDAAKRLLEASADANTQDNMGRTPLHAAVAADAQGVFQI
LIRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVN
NVEAAIVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANREITDHMDRLPRD
IAQDRMHHDIVRLLDEYNLVRSPPMHNGHIGATLSPTLCSPNSYLGSMKPVPGKKARKPS
TKGMSCNGKDAKDIKARRKKSQDGKGSLLDSSAVLSPVDSLESPHGYMSDVASPRMMTSP
FQQSPSMPLNHLQGLSDAHIGVNHLGMTGKQDLSMGSSNRMFESVPPRLSHLPVSTPNST
VLSNGSISFTIGGGPTMNGQCDWMSRMQPPMGQNQFNPMRSNSQGSMHPVNQAQQHSMMT
SLHNGLPTTTLSQMMSYQGMQNTRLASQSHLMQTQQIQQMQHQQNLQQQLQQQQSMQLQH
QNSNTATNGHTIGQNFIAGDLSQSDLQQLSGSTMPIHTILSQETQVLPSSLSQPMPTTQF
LTPPSQHSYSSPLDNTPSHQLQVPDHPFLTPSPESPDQWSSSSPHSMSDWSEGISSPPTS
MQSQMGHIPDQFK
NT seq
7602 nt
NT seq
+upstream
nt +downstream
nt
atgcatcacttctttgtgaaactaatatttgtgatatcgccggttgctttaacacgaggt
tcaagatgcacagtcctgcctgctgagtcatgtttgaatggcgggaggtgtgacagtggc
ccaggcggaactggggaatgcagatgttccatcgactatttcggcaacaggtgtgagtac
ccgaacccctgtctcagctcgccatgcaagaacgcaggcacttgtcggccgtttacccgt
ggcaacacgatagattatacctgcatgtgccgggttggatatactgaccgtctctgcctc
acacccattgataacgtgtgcctgaacaacccctgcaggaatggagggacttgtgagctt
gtcagcctcaaggaatacaaatgccagtgtccgccaggatggtcaggtgagacatgtcaa
caggctgatccctgcgcctccaacccttgcgccaatggcggccagtgctccccctttgaa
gcgcactacatctgcaactgcccctcaggattccacggcctgtcttgcaagcaagacaag
aacgagtgcgccctgagcccctccccatgccagaatggaggcaagtgcgtcaacgagttt
ggctcctaccggtgcgagtgccagcagcagtacattggaaagaactgcgagatcccttat
gtgccatgcaacccctcgccctgccagaacgggggaacctgccggcagaccggagatacc
tcctacgactgcacctgcctgccaggttttgctggtcagaactgtgacaagaacattgac
gactgtcctgaacacaagtgccaaaacagaggcacctgtgtggacggtgtgaacacatac
aactgccagtgcccacctgaatggacaggtcagttctgtatggaggatgtagacgaatgc
caactcatgcccaatgcctgtcagaatgggggaacctgccataacacccacggaggctac
aactgcgtgtgtgtcaatggctggacgggtgacgactgcagcgagaatatcgacgactgc
gccagcgctgcctgctacctgggggccacctgccatgatcgcgtggcctccttcttctgc
gagtgtccgcaaggccggacaggtttgctgtgccacctggacgatgcctgcatcagtaac
ccctgccagaaaggttccaactgtgacacaaacccagtcaatggcaaggctatctgtact
tgccctcaaggctacatgggctctgcctgcaaccaggatgtggacgagtgttctctaggt
gccaatccttgtgagcacgggggcaagtgcatcaacaccaggggctccttccagtgccag
tgcctgcagggctacactgggcctcgctgtgagttggatgtaaacgagtgcatgtccaac
ccctgccaaaatgacgctacctgcctggaccagattggaggcttcagctgcatctgcatg
ccaggttacgagggcgttttctgtgaaatcaatacagacgagtgtgccagcagtccgtgt
ttgaacaacggaaaatgtatcgacaagatcaacacatatcattgcgagtgccctacaggt
ttcacagggtttctttgtcaggtggatattgacgagtgtgccagtacgccttgcaaaaat
ggagcgaagtgcgtggatgggccaaacaagtacacctgtgaatgtactgaaggctattct
ggcatgtactgcgaaagtgatattaacgagtgcgacccggatccttgtcactacggcgcc
tgtaaggacggcattgccaccttcacctgcgtgtgtaatcctggctacaccggtcgtcgg
tgcgagatcgacatcaatgagtgccagagccagccatgtcagaatgggggaacgtgtcag
gaccgaaacaacggctacttctgcaactgccctaaggggacaacaggagcaaactgtgag
gtaaatcttgacgactgtgagaaaaacccttgtgattatggcaagtgcatcgacaaaatc
aacggctacgaatgcgcctgtgagccgggctacaaaggtacgatgtgcaacatcaacatt
gacgagtgtgcctcaaacccctgccacaatggtggcacctgcagggatggcatcaacagc
ttcacctgcgtctgcccagaagggtaccacgatcccacctgtctgtctgaggtcaatgag
tgcaacagcaatccctgcattcacgggtcgtgccaggatggtgtcaatggctacaaatgt
gactgtgacctcggctggagcggtacaaactgtgacatcaacaacaatgaatgcgagtcc
aatccctgtatgaacggaggcacctgtaaagacatgaccagcggctatgtctgcacctgt
cgagttggattcagtggacccagctgccagatgaatatcaacgagtgtgcgtctaacccc
tgcctgaatcaagggacctgcattgatgatgtggctggttacaaatgcaactgcttgttg
ccttacactggagcgaactgtgaggatctcctcgctccatgtgcttcaaacccatgtaag
aacgagggggtctgccaggagtcggaggactatgagagcttctcctgtgtgtgtccggag
ggctggcaaggacagacctgtgaagtcgacatcaacgagtgcgtgaagaatccctgccaa
aactttgccccctgccagaacactattggcggctacaggtgcaactgtaaatccggctac
tctggacgtaactgcgaaaccgatgtcgacgactgccagcccaacccttgcagcaatgac
ggatcctgctccgatggcatcaacagctttgtgtgcacctgcctgccagggttccgtggg
ccggtgtgtgaggaggacatcaacgagtgtgacagcaacccctgcaagaatggggccaac
tgcaccaactgcgtgaacagctacacctgcacctgccccgcgggcttcagcggcatccac
tgcgagaacaacacccccgactgcactgagagctcctgtttcaatggtggtacctgcgtg
gatggcatcaacaccttcacctgcctgtgccctcctggcttcacaggcagctactgccag
catgatatcaacgagtgtgactccaagccctgtctgaatggagggacctgtcaagacagc
tacggcacctacaagtgtacctgtccccagggctacaacggcttgaactgccagagcttg
gtgcgttggtgtgactcctccccctgtaagaatggcggcacatgctggcagacaggcacc
tcgtaccgctgcgagtgcaagagtggctggaccggcctctactgtgatgtgcccagcgtc
tcctgcgaggtggcagctaaacagcaaggtattggcgtgcctcagctgtgcaggaactcg
ggccagtgtgtggacactggcaacacccattactgccggtgccagactggttacacgggc
agctactgtgaggaacaggtggacgagtgcgctccaaacccctgccagaatggagcgacc
tgcatagactaccttggcggatactcttgtcagtgcgtgccaggataccagggatttaac
tgttcagaggagagcaacgagtgcctttcacaaccctgtatgaatggaggcacctgcatt
gacctcgttaatacctacaagtgctcctgcccccggggaacccaaggtgtgcactgcgag
atcaatgtggacgactgcaacccgtttgtcgatccagtcacgttggaacccaagtgtttc
aacaacggcaagtgtatagacagagtgggcggataccactgcatctgcctggcaggcttt
gtgggcgagcactgcgaaggggacgtcaacgagtgtctgtccaacccctgtgacccccgt
ggaacccagaactgcgtccagctcatcaacaactaccgctgtgagtgccgaactggcttc
acaggccggcgttgtgacacggtgtttgatggctgcaaggggaagccttgccggaatgga
ggaacctgtgctgtggccagcaatacacctaatggattcatatgcagatgtccttctggt
ttcgacgggtccacctgtgaatacgactcccgcacctgcggcagcctacgctgccagaac
ggagggaagtgcatcaatggccccaatgcccccagatgcgtctgcccttccgagttcacc
ggcccggagtgccagtatcccgtcaacagcccctgcaattccaacccttgctacaacggt
ggcacctgcaagttcttgcaggaggcccccttctaccagtgtacctgccccaccaacttc
aacgggctctggtgccacatcctggattacaagttccctggcgggatgggcgtagacatc
accccaccccctgagatcacggagcgttgcgagaacccagagtgtgaggagcgcaagggc
aacaagatctgtgaccgagtctgcaataaccatgcctgcggctgggatgggggagactgc
tccctcaacttcaacgacccttggaagaactgcacccagtccctgcagtgctggcgctac
ttcaatgacggcaagtgtgacgagcagtgcaacaaccccggctgcctctacgatggcttt
gactgtcaaaacctggacagccagtgcaaccccctgtatgatcagtattgtaaagaccac
tacgcggatgggcactgtgaccaaggctgcaacaacgccgagtgcgagtgggacggtctg
gattgcaccagctctccagagaagctagcggacggcaggctggtactggtggtgcagatc
cccccagagcagctcaagaacaactcgtttgggtttctgcgggagctcagccgggtgctg
cacaccaacgtggtcttccgcaaggatgagggcggcgagttcatgatctacccttactac
ggcagcgagcaggagctcaagaagcacaacatcaagaggtcctcgggcagctggggagag
attccaagcaacgtcttcaacaagatgaagaagtccatgtacaccatggtgaatgccagg
aagcgccgggagctggaccagatgcagatcaaggggtcagtggtttatttggagattgac
aaccgacagtgctatcagcaatctacagaatgcttccaaagtgcaaccgacgtggctgcc
ttcctcggtgctctggcttccagtggcaatctgaatgttccctacatcattgaggctgtt
accagcgagaacagagacgaggaggagaagaggccggagctgtaccccatgtatgtggtg
gtgtgtgcactggccttcctggcttgcatcggcgtgggggtgctggtttcccgcaagagg
cgcagggagcacgggcagctctggttcccagagggcttcaaagtgacggaacccagcaag
aagaagcggcgtgagccggtgggagaggactcggtcggattaaaaccattgaaaattgct
tcggatttatcactgatggacgataatcagaatgaatggggagacgaagagccctcagac
accaagagattccgatttgaagagcaggcgatgctgaacctggatgatcagtcagaccac
aggcagtggactcagcagcacctggatgcagccgacattcgcatcccctctatcgctccg
actcccccacagggagagatcgacatcgactgcatggatgtcaacgtcaggggtccagat
gggttcactcccctaatgatcgcgtcctgcagtggtggggggctggagactggaaacagc
gaggaggaagaggatgcctctgccaatgtgatctccgacttcatctaccaaggtgccatc
ctgcacaatcaaaccgaccgaacgggggagacggcactccacttggcagcccgctacgcc
cgctcggacgcagccaagcgcctcctagaggccagcgctgatgccaacacccaagacaac
atgggcaggacacccctgcacgctgccgtggctgctgatgctcagggagtcttccagatc
ctgattaggaacagagcgacagacttggatgcccgcatgcacgatggcaccactcccctc
attctggcagctcgcctggcagtcgaaggcatggtggaagagctgatcaattgtcacgca
gacgtcaacgcaatcgatgactttggcaagtctgctttgcactgggctgcagctgtgaac
aatgtggaggccgcgattgtgctgctgaagaatggagccaataaagatatgcagaacaat
aaggaggaaacgcccttgttccttgctgccagagaaggaagctatgagactgccaaagtc
ctgttggatcacttcgccaatcgggaaatcactgaccacatggaccgcctccctcgggac
atcgcacaggaccgcatgcatcatgacattgtacgcctgctggatgagtacaacctggtg
aggagccctcccatgcacaacggccacattggagccaccctatccccgactctctgctca
cccaacagctacctggggtccatgaagccggtgccgggcaagaaagccagaaagccaagc
accaagggcatgagctgcaacggcaaagatgccaaagacatcaaggcaagaaggaagaag
tcccaagatgggaaaggcagtctgctggacagttcggctgtgctgtcgccagtggattcc
ctcgaatctcctcatgggtacatgtcggatgtggcttccccacgcatgatgacctctccc
ttccaacagtccccttccatgcccctcaaccatcttcagggcttgtctgatgcccacatt
ggtgtaaaccacctgggcatgactgggaagcaggatctgtccatgggcagctccaatcgg
atgtttgagtctgtgccgccacgactctcccaccttcctgtatccactcccaacagcact
gttctgagcaatggttccattagcttcactataggtggggggcccaccatgaatggccag
tgcgactggatgtccaggatgcaacctcccatgggacaaaaccaattcaatcccatgagg
agcaatagccagggcagcatgcacccagtcaaccaagcccagcagcatagcatgatgacc
tccttgcacaacgggcttcccaccaccaccttgtcccagatgatgagctaccaggggatg
caaaatacgaggcttgccagccagtctcatttaatgcagacgcagcagatccagcaaatg
caacaccagcagaacctgcagcagcagttacagcagcagcaaagcatgcaactgcagcac
cagaactccaatactgccaccaacggtcacactattggccagaacttcattgctggtgac
ctgagccagtcggatctacagcagctgtccggcagtaccatgccaatccacaccatactg
tcacaagagacccaggtccttccctcatccctcagccaacctatgcccaccacccagttc
ctcacccctccctcccagcacagctactcttcgccattggacaatacccccagccaccag
ctccaggtgccagaccacccctttctgactccttccccagaatccccggaccagtggtca
agctcctccccacattccatgtctgattggtcagaaggcatctccagcccgcccacaagt
atgcagtcgcaaatgggacacattccagaccaatttaaatga
DBGET
integrated database retrieval system
