Polyodon spathula (Mississippi paddlefish): 121308607
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Entry
121308607 CDS
T07273
Symbol
slc6a4a
Name
(RefSeq) solute carrier family 6 member 4a isoform X1
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pspa02000
]
121308607 (slc6a4a)
Transporters [BR:
pspa02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121308607 (slc6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
5HT_transport_N
Motif
Other DBs
NCBI-GeneID:
121308607
NCBI-ProteinID:
XP_041097018
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All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MDCTCTPQDERKLCVDNPAFLRSEEDDSDQPQPQQCRKRERHPAQHSQSRGLSGSSSSTA
ADGRHRNGNSSTSSTTPIAVTMEMHEPMITESSPLSSAPENGDLQDKGRLIWGDNGAPQA
TEKEFAGEKGSPAPGQVSNGYPSATQSPGEGGTVAMPGCPRTLVVQQTPGSQRETWSKKM
DFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYLLMALFGGVPLFYMELALGQYHRSG
CISIWKHICPIFKGIGFSICIIALYIAFYYNTIMAWAMYYFLSSFSSQLPWTSCGNAWNT
INCTNYLQSGDNVTWEPHSISPGEEFYTRRVLQVHHSEGLHDLGSVSWQLALCLLFIFTI
VYFSIWKGVKTSGKVVWVTATFPYVVLLVLLVRGATLPGAWRGVVFYLKPDWSKLLSTTV
WIDAAAQIFFSLGPGFGVLLAFASYNPFHNNCYKDAIVTSSINCLTSFMSGFVIFTVLGY
MAEMRHLEVSEVAKDTGPSLLFITYAEAIANMPASTFFAIIFFLMIITLGLDSTFAGLEG
VITAMMDEFPDQLSKRRELFVLGIISVCFLGALTTLTYGGAYVVKLFEEYATGAPVIIVV
FLEVIAVSWFYGMPRFCRDIQVMLGFNPGWYWRICWVAICPVFLLFIICSFLVFPPQLKL
FHYDYPPWTTVLGYCIGISSFICVPAYMVYLLVVTPGTLKQRLLKNITPEPGIEIPRCDI
ITNAV
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggactgcacctgcaccccacaggatgagaggaagctctgtgtggataaccccgccttc
ctgaggtctgaggaggacgactctgaccagccacagccgcagcagtgcaggaaaagggag
aggcatcctgctcagcacagccaatcccgtgggctttctggttcttcttcttccactgca
gcagatgggcgccacagaaacggaaacagcagtaccagtagcaccacgcccatagctgtc
accatggagatgcacgagccaatgataacagagagcagccccctgagctccgcccccgag
aatggggacctgcaagacaagggacggctgatatggggggacaatggtgccccccaggcg
acagagaaggagtttgcaggggagaagggaagccccgccccggggcaggtctctaacggt
tacccctcggccacacagagccctggagaggggggcacggtggcaatgccaggctgtcct
cggactctcgtggtgcaacagacccccggcagccaacgggagacgtggagcaagaagatg
gacttcctgctgtctgtgattggctacgccgtggacctggggaacgtgtggcgcttccca
tacatctgctaccagaacggagggggtgctttcctcctgccctacctgctgatggcgctg
tttggaggggtgcccctgttctacatggagctggctctggggcagtaccatcgcagcggc
tgcatctccatctggaagcacatctgccccatcttcaaaggtatcggcttctcgatctgc
atcatcgctctctacatcgccttctattacaacaccatcatggcctgggcgatgtattac
ttcctgtcctccttcagctcccagctgccctggaccagctgcgggaatgcgtggaacacc
atcaactgcaccaactacctgcagagcggcgacaacgtgacctgggagccccactccatc
tcccccggagaggagttctatacgcgccgggtgttgcaggtgcatcactcggaggggctg
cacgacctgggctctgtcagctggcagctggctctgtgcctgctcttcatcttcaccatc
gtctacttcagcatctggaagggcgtcaagacctctggcaaggtggtgtgggtcacagct
accttcccctatgtggtgctgctggtgctgctggttcgaggagcgactctgccgggggca
tggaggggcgtcgtcttctacctgaaacctgactggagcaaactgttgagcacgacggtg
tggattgatgctgcagctcagatcttcttctccctcggacccgggttcggggtcctgctt
gccttcgccagctacaaccccttccacaacaactgctacaaggatgccattgtgaccagc
tccatcaactgcctgaccagcttcatgtccggcttcgttatcttcaccgtgctcggatac
atggcggagatgaggcacctggaggtgtccgaggtggccaaggacacgggacccagcctg
ctcttcatcacctacgcagaagccatcgctaacatgcctgcctccaccttcttcgccatc
atcttcttcctcatgatcatcacgctcggacttgacagcacatttgcagggctggagggt
gtgatcacggcgatgatggatgagtttcctgaccagctgtccaagcgcagggagttgttt
gttctcgggatcatctccgtgtgcttcctgggggctctcaccaccctcacctatggaggt
gcctacgtggtcaagctgtttgaggaatacgccacgggtgcgcccgtcatcatcgtggtc
ttccttgaggtcattgcagtctcctggttctacgggatgcctcggttctgccgtgatatc
caggtgatgctgggtttcaatccaggctggtactggaggatctgctgggtggcaatctgc
cccgtcttcctgctgttcatcatctgcagtttcctggtgttccccccacagctcaagctg
tttcactatgactatcccccctggacgactgtgctggggtactgcatcggcatctcctct
ttcatctgcgtgccagcctacatggtgtacctgctcgtggtcacaccaggcactttaaaa
cagcgcctcctgaagaacatcacccctgagcctggcatagagatcccgcgctgtgacatc
atcaccaacgcggtgtga
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