Polyodon spathula (Mississippi paddlefish): 121315888
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Entry
121315888 CDS
T07273
Name
(RefSeq) adenomatous polyposis coli protein-like isoform X1
KO
K02085
adenomatosis polyposis coli protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
pspa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121315888
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121315888
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121315888
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121315888
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121315888
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121315888
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
121315888
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
EB / APC
121315888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm_APC_u3
APC_basic
EB1_binding
APC_r
APC_u5
APC_rep
APC_u9
APC_u14
SAMP
Arm
APC_N_CC
APC_u15
APC_u13
APC_15aa
Suppressor_APC
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
121315888
NCBI-ProteinID:
XP_041106389
LinkDB
All DBs
Position
1:complement(24257246..24314803)
Genome browser
AA seq
2849 aa
AA seq
DB search
MAAASYDQLLKQVEALKMENSNLRQDLEDNSNHLTKLEREASNMKEVLKELQGSIEEESM
GSSGQIDLLERLKEMNLDPSNFPGVKLRPKVSLRSYGSREGSVSGRSGESSPVPMGSHPR
RGLVSSSRESTGYLEELEKERSLLIAELEKEEKEKDWYYAQLQNLTKRIDSFPLTENFSL
QTDMTRRQLEYEARQIRAAMEQQLGTCQDMEKRAQARVARIQQIEKDMLRIRQHLQAQTA
ESEKTSQSKHDPPSRDAERQGEGGHAAVELGMGTTVCGQGSGVRMDHETASDMSCSSSYS
VPRRLTSHLGTKVTEDSKPQVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCIAMRQSG
CLPLLIQLLHGNDKESVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLE
QIRAYCETCWEWQEAHEQGVDQDKNPMPSPVEHQICPAVCVLMKLSFEEEHRHAMNELGG
LQAIGELLQVDCEMYGLTNDHYSVTLRRYAGMALTNLTFGDVANKATLCSMKGCMRAMVA
QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA
LWNLSAHCTENKADICAVDGALAFLVSTLTYRSQTNTLAIIESGGGILRNVSSLIATNED
HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNVKDQEALWDLGAVSMLKNLI
HSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPSLHVRKQKALIEELDAQHLSE
TFDNIDNLSPKASHRNKQRHKQNVYSEYVLDSGRHNEDGMCRSESFNATNLTVLSPYMNT
TVLPGSTSSETRGNTESSRTEKDRSTERERRGPGPGGFHPSENSSKRIGMQISTTAAQIA
KVMEEVQSIHISQDDGSTGSSADLHCRQEERSGPRRTSASHTHSNAYHFNKQEHPSRTCP
MPYGKIECRASNDSLNSVSSSDGYGKRGQMKPSVESYSEDDDGYGKRGQVKQSVESYSED
EEGKFCSYGKYPADLAHKIHSANHMEDNDGEMDTPINYSLKYSDEQLNSGRQSPSQNERW
PRPKHLVEDEMKRNEQKTSRTQNQGYSIYTENSSEAADKHMKFPPRFGQALCPGPFRQRG
CNGSEQTGSGSNHGIKQKMNPSHCPVDDYDDDKPTNYSERYSEEEQHDEEDQPTNYGIKY
SDEHHHVEPIDYSIKYSSEVPSSQKYGHSKATSVQNSTKDHITQNSGSSSGPSTKNSVRQ
NQLHPSSAQTRSGPTRVLQKSTTGKAPSINQETIQTYCVEDTPICFSRGSSLSSLSSAED
EMEGREQHRNVANNYPTLPIADKDSNGSLCADTPMAEDQTSSQYTRMKAQRHQSSNVASS
DGSRHKAVEFSSGAKSPFKSGAQTPKSPPEHYVQETPLMFSRCTSVSSLDSFESHSIASS
VQSEPCSGMVSGIISPSDLPDSPGQTMPPSRSKTPPPPHAGQMKNKVKVPNNADERELAP
RHVAVNAAIQRVQVLPDNDTMLHFAIESTPDGFSCSSSLSALSLDEPFIQKDVTLQIMPP
VHEDDHGNGEPEKEEDTKEHESQDKPPNSSEPEKDILNDSDDDDIDILEECINSAMPTKS
SRKNKKPPPVARKPSQLPVYKLLPSQNRGQQQKNANFTHGEDMPRVYCVEGTPINFSTAT
SLSDLTIESPPNELANTESSNIETQGTGSSAMERRDTIPMEGRSIDGKDTVKGSAAPCLP
LDDEKAEGDDILYECISSAMPKGKSHKPFRVKKIIDQVQQTSTSPGNPRQQDTEKKKPTS
PVKPMPQSSEYRARVMKPPNSFSSGTYPDKNKDAKKRDPKNSRECSNKPPNSEERVRGSF
AFDSPHHYSPVEGTPYCFSRNDSLSSLDFDDDELDFSKEKAELKKEKEHKKASTRNVNEQ
TSNHPPVSRTQVYQRPGPNRGPAKLLQKQATFPQASKDNIGSVTDEKMQNFSIEDTPVCF
SRNSSLSSLSDIDQENNNKESSLDRQKENSSVQVEGSRPQASGYAPKAFNVEDTPVCFSR
NSSLSSLSIDSEDDLLQECISSAMPKKKKQPAKSHGGDNATNDDKHIGGILTEEPDLTLD
LRDIQSPISEQAHSPDSETFDWKAIQEGANSIVSSLHQAAAASLSRQASSDSDSILSLKS
GISLGSPFHLASDQEEKPVASNKGPRILKPGEKSTSESKKKEEEQAKALKGGKKVYKSLI
TGKARSSVDISSIPKHQAPVPLISRGRTMIHIPGIRNSSPSTSPIPKKTPPKNTPLKAPT
TGQISSNSPRGVKTPAKSDPSSANRQQGAQGGSSKGSSRSGSRDTTPSRPAQQTLSRPVQ
SPGRTSVSPGRNRISPPNKLSQLPRTSSPSTASTKSSGSGRMSYTSPGRHLGQQTPTKQS
CLPRSTSGIPRSESASKGLNQSAAAGSSKKVELSRMSSTKSSGSESDRSERPVLVRQSTF
IKEAPSPTLKRKLEESASFESLSPTSRPVSPNRSQSHTPVLSPSLPDMSLTLPYQGSCWR
KSPQSQNSSENGDDRSLRRHDIARSHSESPSRLPINRSGTWKREHSKHSSSLPRVSTWKR
TGSSSSILSASSESSEKGKSEDERQHASFAQGSKQSKEIHTPLKGTWRKIKESENPQNPS
GDGSDADSVVHQMAPAVSKTEDVWVRIEDCPINNPRSGKSPTGNTPPIIDSVPEKLTIDD
PDPKDTQSKQAAVNDIVAVCTTGLEHHVNSFIMNESPEKKAAETKSVASYPAATPETSEN
PVTERTPFSSTNSSKHSSPSGAVAARVTPFNYNPNPRKSSTDNGSARPSQIPTPINSSTK
KRDSKGDSAESSGNQSPRRLSGSYLVTSV
NT seq
8550 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcttcttatgaccagctgctaaagcaagtggaggcacttaaaatggaaaac
tcgaatcttcgacaagatcttgaggacaactcaaatcaccttaccaaacttgaaagagag
gcatcaaacatgaaggaggtgcttaaagagttacaaggaagcattgaagaagagtccatg
gggtcttctgggcaaattgacctgttggagcggctgaaagagatgaacttggatccaagt
aatttccctggggtcaaactaaggccgaaggtttcattacgctcatacggcagtcgagag
ggctcagtatctgggcggtcaggagaaagcagccctgtacccatgggctcccatccacga
aggggattggtcagtagcagccgggaaagcactgggtatctggaggagttagagaaagaa
agatctttattaattgctgaactggagaaggaagagaaggaaaaagattggtattatgca
caacttcagaatctcacaaagaggattgacagctttccgctcactgagaatttttctctg
caaacggacatgacaagaaggcaattggaatatgaagcgaggcagatcagagctgcaatg
gagcagcagcttgggacatgccaggacatggagaaacgggcacaggcaagagtagctaga
attcagcaaatagagaaagacatgcttcgcattcgacagcacttacaggctcagacagca
gaatcagagaagacatcgcagagcaagcatgatccaccttcacgtgatgcagaaagacag
ggtgagggaggacatgcagctgtagaattgggcatgggtaccacagtgtgtggtcagggt
tcaggtgtccgcatggatcatgagacagccagtgatatgagctgtagtagtagttattct
gtccctcgaagactgacaagtcacctgggtaccaaggtaaccgaagattccaagccccag
gtggaaatggtgtattcgctgctgtcaatgcttggtacccacgataaggacgatatgtcc
cgcactttgctagcgatgtctagctcccaggacagttgtatagcaatgcggcagtcaggg
tgccttcctctgctgatccagctgttgcatggaaatgataaagaatctgtgctgctggga
aattcccgtggaagcaaggaggcccgtgcaagggcaagtgcagcgctacacaatatcatc
cactcgcaaccagacgacaaacgtggaaggagagaaatacgtgtgcttcacctgttggaa
cagattcgtgcttattgtgaaacatgctgggaatggcaagaggcacatgaacaaggtgta
gatcaggacaaaaacccaatgccatcaccagtggagcatcagatctgccctgctgtatgt
gtgcttatgaaactgtcttttgaggaagaacacaggcatgctatgaatgaacttggagga
ttgcaggctataggagagttgttgcaggtagactgtgaaatgtatggacttaccaatgac
cactacagtgttactctgaggcgttatgcaggaatggctcttacaaacttaacatttggc
gatgttgcaaataaggcaactttgtgttcgatgaaaggctgtatgagggcaatggtggca
caactgaaatccgaaagtgaagatttacagcaggtaattgcaagtgtcttgaggaatttg
tcttggcgtgctgatgttaatagtaaaaagactctacgtgaagtaggaagtgtgaaagca
ctaatggaatgtgctctggaagtgaagaaggaatctacccttaaaagtgtactcagcgcc
ctctggaacttgtcggcacactgcaccgagaacaaggcagacatctgcgctgtggatggt
gcattggcctttttagttagcactttaacctacagaagtcaaaccaacactttagccatc
atcgaaagtgggggaggcatcttgcgaaatgtgtccagtctcattgctacaaatgaagat
cataggcagatactgcgagaaaataactgcctacagacgctgttacaacacttgaaatct
cacagcctaacaatagttagtaatgcatgtggaactctatggaacctttcagctcgcaat
gtaaaggaccaagaggccttatgggacttgggagctgtgagcatgcttaagaaccttatt
cattcaaagcacaaaatgattgcaatgggcagcgctgctgctttacgaaacctaatggcc
aaccgacctgctaaatataaggatgcaaacattatgtcccctggatctagcttaccttcc
ttgcatgtcagaaaacagaaagctttgatagaagaactggatgcacaacatttatcagaa
acttttgataacatcgacaatttgagccccaaagcatcccatcgaaacaaacaaagacac
aagcaaaatgtgtacagtgaatacgttttggactctggacggcacaatgaagatgggatg
tgtaggtctgagagttttaatgctaccaatttgactgttctctctccttatatgaacact
actgtactgcccggctcaacctctagtgaaactaggggaaatacagaaagttctaggact
gaaaaagacagaagcactgaaagagaaaggcgaggaccaggacctggtgggttccatcct
tcagaaaattcttcaaaaagaattggaatgcagatatctacgacagctgcacagattgcc
aaggtcatggaagaagtgcagagcatacatatatcccaagatgatggaagtacagggtct
tcagcagatctgcattgtcgacaagaggaaaggagtggcccgagacgaacatccgcttct
cacacgcactctaatgcgtatcactttaacaaacaagagcatcccagtaggacatgccct
atgccatatggaaaaattgaatgtagagcatcaaatgacagcctaaacagtgttagcagc
agtgatgggtatggtaaaaggggtcagatgaagccatctgtggaatcctattcagaggat
gatgatggatatggtaaaaggggtcaggtgaagcagtcagtggaatcctattcagaggat
gaggaagggaagttttgcagttatggaaagtatcctgctgacctagcccacaagatacac
agtgccaaccatatggaagataatgatggagagatggacaccccaataaattacagtctt
aaatattcagatgaacagttaaattcaggaaggcaaagccctagccaaaatgaaaggtgg
ccaagacctaaacatcttgtggaagatgagatgaagaggaacgaacaaaaaacatcaagg
actcaaaaccaggggtattcaatttacacagaaaacagtagtgaggccgctgataagcat
atgaaattccccccacgatttggacaggcgctgtgtcctggtcctttcagacaaagaggc
tgtaacggctcagagcaaactggatctggttctaatcatggaattaaacaaaagatgaat
ccatcacactgcccggtagatgactatgatgatgataagccaaccaattatagcgagcgg
tattcagaagaagagcaacatgatgaagaggatcagccaacaaattatggaataaagtat
agtgacgaacaccaccatgttgaacccattgactacagtataaagtactcctctgaagtc
ccgtcatctcaaaagtatggacattcaaaggctacttctgttcagaactcaacgaaggat
catataacacaaaacagtggaagcagctctggtccatcaaccaaaaattctgtccgacaa
aaccaacttcacccatcctcagcccagacaagatcaggtccaactcgggtactccaaaag
tctaccacaggcaaggcaccttccatcaatcaagaaactatacagacgtactgtgttgaa
gacacaccaatctgtttttccaggggcagttccctgtcgtctttgtcgtctgcagaggat
gagatggaagggcgtgagcagcacaggaatgttgcaaataactacccaactttgcctatt
gctgacaaagattctaatggttctttatgtgctgacacgcccatggctgaagaccagacc
tcttctcagtatacaagaatgaaagcccaaagacatcagtcctctaatgtggcaagttct
gatggatcaagacataaagctgttgagttctcgtccggtgccaaatctccattcaaaagt
ggggcacagactccaaaaagccctccagaacattacgtacaagaaactcctctaatgttt
agcaggtgtacttctgtaagttctttggacagctttgagagtcactcgattgccagctct
gtacagagtgaaccttgcagtggaatggtcagtggaattatcagtccaagtgatctgcca
gatagtccgggtcagacaatgcccccaagcagaagcaagacccctcctccaccacatgca
ggtcaaatgaaaaacaaagtgaaagtgcctaataatgctgatgagagagagttggctcca
aggcatgttgctgtaaatgctgctattcagagagtccaggttcttccagataatgatact
atgttacattttgcaatagaaagcactccagatggcttctcttgttcatcaagcttaagt
gctctgagtcttgatgagccctttattcagaaagatgtaacactgcaaataatgcctcct
gtacatgaagatgatcatggaaatggagaacctgaaaaggaggaagacacaaaagaacat
gagagtcaggataaaccacctaattccagtgaacctgaaaaagatatacttaatgattct
gacgatgatgacattgatatattggaagaatgtataaattcagccatgccaaccaagtct
tcaagaaaaaacaaaaagccgcctcctgtcgccagaaaaccaagccagcttcctgtatat
aaactcctcccttctcaaaaccgaggacagcagcaaaaaaatgctaatttcacacatgga
gaagacatgcctagagtatactgtgttgagggaactccaattaacttttctacagccaca
tctctaagcgacctaaccatagagtcacctccaaatgagcttgctaacactgaaagttct
aatattgaaacccagggtactgggtcatctgccatggaaagacgagacactattccaatg
gagggaagaagcatagatggcaaagatacagtaaaaggctccgctgctccctgtttacct
ctggatgatgaaaaagcagaaggcgatgacatactatatgagtgtattagttcagcaatg
ccaaagggtaaaagtcataagcctttcagggtaaagaaaattatagatcaggtacagcag
acatctacatctccaggtaacccaaggcaacaagatactgagaaaaagaaacctacttct
ccagtaaaaccaatgccgcaaagcagtgaataccgagctcgagtgatgaagcctcctaac
agtttttcctcaggcacttaccctgataaaaataaggatgccaaaaaacgagatcccaaa
aattccagggaatgtagtaataagcctccaaatagcgaagaacgtgtacgtggaagtttt
gcttttgattccccgcatcactatagtccagtagagggcaccccttattgtttctcacgc
aatgattccctgagttcattagactttgatgatgatgaactagatttttctaaagagaaa
gctgaacttaaaaaagaaaaagaacataaaaaagcatccacaagaaatgttaatgagcaa
acgtccaaccacccacctgtaagtagaacgcaagtgtaccagaggccaggtcctaataga
ggccctgcaaaactgttgcaaaaacaagcaacatttccacaggcatccaaagataacata
ggctctgttacagatgaaaaaatgcagaacttttctattgaagacaccccagtgtgtttt
tcaagaaattcatctctcagttcattaagtgatattgaccaagaaaacaataacaaagaa
agtagtcttgatcgtcagaaagaaaattcaagtgtccaggtggaaggatcgaggccccag
gcttcaggttatgctccaaaggcatttaacgttgaagacactcctgtgtgcttttccaga
aacagttctcttagctctcttagcattgactcagaagatgatcttctacaagaatgtatt
agttctgctatgcccaagaagaaaaaacagcctgccaaaagccatggaggtgacaatgca
acaaatgatgacaaacatattggggggattttaacagaagagccagatttaacattggat
ctaagagatatacaaagtcctatttcagagcaggcacactctcctgattctgaaactttt
gactggaaggctattcaagaaggtgctaattctattgtaagtagcttacatcaggctgct
gctgctagcctttccagacaggcctcttcggactctgattcaatactgtctcttaaatcg
ggcatctctctaggatctcccttccaccttgcatctgatcaagaagagaagcctgttgcc
tcaaataaaggtccaaggatcttaaagcctggagagaagagcacctcggaatccaaaaag
aaagaagaggaacaagcaaaagctttaaaaggaggaaagaaggtttataaaagtctgata
accggtaaagcacgatccagtgttgacatttcttctataccaaaacatcaggctcctgtt
cccttgatctctcgtggaaggactatgatccatattcctggtataagaaacagctccccc
agcaccagcccaattcccaagaagactccaccaaaaaacacccctctaaaagctccaacc
acagggcagatttccagtaactcgccaagaggtgttaaaactcctgcaaaatctgacccc
agctctgcaaacagacaacagggggctcaaggaggatcaagcaaaggctcatccaggtcg
ggatcaagagatacaactccctctagacctgcacagcagactttatcaagacctgtgcag
tcacctggtcgtacttctgtatcacctggaagaaatagaatcagtcctcccaacaagtta
tcacaattgcctcgcacatcatctccaagtacagcatcaactaagtcatcaggctcagga
agaatgtcttatacatcccccggaaggcatttaggccagcaaactccaaccaagcaaagt
tgtttaccaagaagtactagtgggattccgagaagtgagtctgcttcaaaaggcttgaac
cagagtgcagctgcaggttcttctaaaaaagtagaattgtcaaggatgtcttcaacaaaa
tcaagtggaagtgagtctgatagatcagaaagaccggtactggtccgtcagtcaaccttt
atcaaagaagctcctagtccaacactgaagagaaaactagaagagtctgcctcatttgaa
tcattgtcacctacatcaagaccagtctcccccaacagatcccagtcccacacaccagtt
ttaagtccatcacttccagatatgtcattaaccttgccatatcaaggtagttgttggagg
aaatccccccaaagccaaaactcttctgaaaatggggatgataggtctctgagaaggcat
gacattgcccgttcacattctgagagcccatccagactcccaattaacaggtccggcact
tggaagcgtgagcatagcaagcactcttcatctctcccaagagttagcacttggaaaaga
actgggagctcctcctccatcctttctgcatcttctgagtcaagtgaaaagggaaaaagt
gaagatgaaaggcaacatgcaagttttgctcaaggaagcaagcagagcaaagaaatccat
acccctttgaaaggaacatggaggaagatcaaagaaagtgaaaatccccaaaatccgtct
ggtgatggaagtgatgctgattcagtggttcatcaaatggctcctgctgtgtccaagaca
gaggatgtgtgggtgagaattgaggactgtcctatcaataaccccaggtctgggaaatcg
ccaactggaaatactcccccaataattgacagtgtgccagaaaaattgactattgatgat
ccagaccctaaagacacacagtccaaacaagctgcagtaaatgacattgtggctgtttgc
acaacgggactagagcatcatgtgaattcatttattatgaatgaaagccctgaaaaaaag
gcagcagagaccaagtcagtagcaagttatcctgctgctacaccagagacttctgaaaac
cctgttaccgagcgcactccttttagttctacaaactcaagtaagcacagctcacccagt
ggtgctgttgctgcaagagtaacaccttttaattataatcccaaccccaggaagagcagc
actgataacggctctgcgcggccatcacagattccaacacccataaacagcagcacaaag
aaacgagactccaaaggtgatagtgctgagtctagtggaaatcagagccccagacgcctt
tctgggtcataccttgtgacgtctgtgtga
DBGET
integrated database retrieval system
