Polyodon spathula (Mississippi paddlefish): 121316697
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Entry
121316697 CDS
T07273
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121316697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121316697
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121316697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
121316697
NCBI-ProteinID:
XP_041107696
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All DBs
Position
6:2998076..3009247
Genome browser
AA seq
1372 aa
AA seq
DB search
MAKQSSIFNFFAKSPPLKTKLKPSPSPTEADLPSSVHNSNTSPKEEAKQAADSSKKAAAK
LSKPASGQARIVGKLFGEKKKTTETTDSKSTCQFKPGDLVWAKLEGHPWWPCLVYNHPET
AELLRGKGKAQRIHVQYFDVPPMRGWVNVKYVKPYQGSDASSAKVGGVFFSGRPEIRRAV
DLADSAMKDDAEKRLQLAVCVEPSEDEEEEEEDDDEMEIDEEHSDEEEEAVKSNKRPARQ
SRAGGPQTKRRRIMVPSDSENSDEEFNPDEAGASSDEASSGVDENEVTEPESESEADPES
PVKPFKRKQEALRTPAREKTAKPSSLSDMPKRSPAVAADTKSRLFAFSAPDSFESQTNSA
GGAAAGSRGMVWDHEKLDWLQDGKRKDSKKRKQTDPDYDPTTLYISEDFLNKCTPGMRRW
WQLKSEMFDAVLFYKVGKFYELYHMDAVIGVTELGLVFMKGSWAHSGFPEIGFGRYSDVL
VQKGYKVARVEQLETPDMMEARCKTMARPTKFDRVVRREVCRVITKGTQTYSVLDGASSE
SHSKYLLCVKEKADEESSGCHRMYGVGFVDTSVGKFHVGQFQDDRHCSRFRTLVAHYAPA
QLLFEKGNLSVETQKIIKSSLASVIQEGLQSGSQFWDASKTLKVLAEEGYFKESNKKNGD
ADEALPAVLKSMTSDSDSLSLTPGEGYELALSALGACVFYLKRCLVDQELLSMANFEEYV
PVDMEMGKAKGSSSFFARTLQRMVLDGVTLSNLEILQNGSTGTAEGTLLERLDSCCTPFG
KRLLKQWLCAPLCNPSSIDDRLHAAEDLMALPDKLSEIRELLKKLPDLERLLSKIHSLGS
TLKNQDHPDSRAILYEEVTYNKRKIADFLSALEGFKVMLEVTSIIQPAVENFRSKLLKQI
VSLRDESDKGLFPDFSAELKRWEMAFDHQKARNTGVITPKAGFDPEFDQALSEIKGTERS
LQEYLEKQRKRLGTKSIVYWGTGKNRYQMEIPESVTERHVPEEYEVKSTRKGYKRYWTGE
IERLFGELVTSEDKRDGAVKDCMRKLFYNFDKNYKDWQTAVECIAVLDVLICLANYSQGG
DGPMCRPEVVLPVDGAVPFLELRGSRHPCITKTFFGDDFIPNNVFIGCSGEEDEEESESQ
ASCVLVTGPNMGGKSTLMRQCGLMVILAQLGCYVPAESFRLTPVDRVFTRLGASDRIMAG
ESTFFVELSETASILHHGTSHSLVLLDELGRGTATYDGTAIASAVVKELAENIQCRTLFS
THYHSLVEDYSHCTAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLA
NIPEEVIQIGHKKAKEFERMTVSLRIFKELCSHAEDPKADASTFTSLVKTIF
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagcagtattttcaacttctttgctaagtcgcccccattgaaaaccaaa
ctgaaacctagcccgtctcccactgaggcggacctgccctcttcggtgcacaactccaac
acttctcctaaggaagaagcgaagcaggcagctgactcttcaaagaaagccgctgcaaag
ctgagcaagccggcatctggccaagcgaggatcgtcggcaagctcttcggagagaagaaa
aagacgacagaaacaacagacagtaaaagcacatgccagttcaaacctggagacctggtg
tgggccaagctggagggacacccatggtggccctgcctggtgtacaatcaccctgagact
gcagagctcctgaggggcaaggggaaagcccagagaatccatgtgcagtacttcgatgtg
cctcccatgaggggctgggtcaacgtgaagtatgtcaagccgtaccaaggctcagacgca
agcagtgcaaaagtgggtggtgtgttcttcagcgggaggcctgagattcgcagagcagtg
gacttggcagacagtgccatgaaagacgacgcagagaaaaggcttcagttggctgtgtgt
gtggagccatctgaagatgaagaggaggaggaggaggatgatgatgagatggagattgat
gaggaacacagtgatgaggaggaagaggcggtcaaatctaacaaacggccagccaggcag
agcagagcaggtggtccgcaaacaaagcggagacgcatcatggtgccgtcggacagcgag
aactcggacgaggagttcaatccagatgaggcgggggcgagcagcgatgaggcgagcagt
ggtgtggatgagaacgaggtcaccgagcctgaatctgagtctgaggcagaccccgagagc
ccagtgaaacccttcaagaggaagcaggaggccctcagaaccccagccagagagaaaaca
gcaaaacccagcagcctgtcagacatgccaaagaggtcgcccgcagtggccgccgacacc
aagtcgaggttgtttgcgttctctgcaccggatagttttgagagccagaccaactctgct
gggggtgcagcagcaggaagcagagggatggtttgggatcatgaaaagctggattggcta
caggacggcaaaaggaaagactccaaaaaacgaaagcagacagacccggactacgacccg
actactctctacatctcggaggactttcttaacaaatgcactccaggcatgaggagatgg
tggcagctcaagtctgagatgtttgatgctgtccttttctacaaagtgggcaagttctat
gagctgtatcacatggatgctgttataggggtcaccgagctggggctggtgttcatgaag
ggctcctgggctcattccggcttcccagagattggttttgggcgctactctgacgttctg
gtccaaaaaggatacaaggtggcaagggtggagcaattagaaactcccgatatgatggaa
gcccgctgcaaaaccatggcgcgcccaactaaatttgacagagtggtgcggcgggaggtg
tgcagggtgatcaccaaaggcacccagacctacagtgtcctagatggagcttcatctgaa
agccatagcaagtacctcctgtgtgtcaaagagaaagctgatgaggagtcttcgggatgc
catcgtatgtatggcgttggttttgtggacacttcggtgggcaagttccacgtgggtcag
tttcaagatgaccgccactgttccaggttcaggaccctggttgcgcactacgctccagcc
cagctgcttttcgagaagggcaatctctcggtggaaacccaaaaaataataaaatcttct
ctggcttctgttatacaagagggcttgcaatctggatcccagttctgggatgcatccaaa
acactaaaagttctagcagaagagggctacttcaaagaaagtaacaagaaaaatggagat
gccgacgaggcactgcccgctgtgctaaaaagcatgacctcggacagtgattccctgagc
ctcacccctggcgaaggctatgaactagccttatcggcacttggcgcttgtgtgttttac
ctgaagcggtgtcttgtagatcaggagctgctgtcaatggccaactttgaagagtacgtg
cctgtggacatggagatgggcaaagctaaaggttcgtcgagcttctttgccaggactctg
cagcgcatggtgctggatggtgtgacactgagcaacctggagatccttcagaatgggtca
acgggcaccgctgagggcaccctgctggagaggctggacagctgctgcacgcccttcggc
aagcggctcctgaagcaatggctgtgcgcaccgctgtgcaacccctcctccattgacgat
cgcctccacgccgcagaggacctgatggccctcccggacaagttaagcgagatcagggag
ctcctgaagaagctgccagacctagagaggctcctcagcaagatccacagcctgggctcc
actctgaagaaccaagatcatcccgacagcagggccatcctctacgaagaggtcacctac
aacaagaggaagatcgcagacttcctctctgcgctcgagggcttcaaagttatgctggag
gtcaccagcatcatccagccggctgtagagaacttcagatcgaagctgctgaagcagata
gtcagtcttagagacgaaagtgacaagggacttttcccagacttctcagcggagctgaag
agatgggagatggcctttgaccaccagaaggcgcgcaacaccggtgtcataacccccaaa
gcaggcttcgatccggagtttgatcaagccctgtctgaaatcaagggtacagaacgcagt
ttacaagaatatttggagaagcagcgcaagcgattgggaaccaagtccattgtttactgg
ggaactggcaagaaccgttaccagatggagatcccagagagtgtgacggagagacatgtg
ccagaggagtatgaggtcaagtccactagaaagggctacaagcgttactggactggagag
attgagagactgtttggtgaactggtgacctccgaggacaaaagagatggggctgtgaag
gactgtatgaggaaactcttctacaactttgacaagaattacaaggactggcaaactgct
gtggaatgcatcgcagtgctagacgtcctcatctgtctggcaaactacagccagggaggg
gatgggcccatgtgccgcccggaggtagtgctgccagtggatggcgctgtgcctttcctg
gagctgcgaggctcgcgccacccctgcatcaccaagaccttctttggggatgacttcatc
cccaacaacgtgtttatcggatgtagtggagaggaggatgaagaggagagtgaaagccag
gcctcctgcgtgcttgtgacaggacctaacatgggtggcaagtctacccttatgagacag
tgtgggctcatggtgatcctggctcagctgggctgctatgttcctgcagagagtttccgg
ctcactcctgtggatcgagtcttcacccggctgggggcatcagacagaattatggcaggt
gaaagtacgttcttcgtggagttgagcgagacagcaagcattctgcatcatggtacatcc
cattccctggtgctgctggatgaactgggaaggggcacagctacttatgatggcactgcc
attgcaagtgctgtggttaaggagcttgctgagaatatccagtgccgcactctgttttcc
acacattaccactccctggtggaggactattcacactgcacagcagtacggcttgggcac
atggcgtgcatggttgaaaatgagtgtgaagatcccagccaggagacaatcacattcctg
tacaagttcatcagaggggcctgtcctaaaagctatggtttcaatgctgccaggcttgca
aacattcctgaggaagtcattcagatcggtcacaaaaaggcaaaagaatttgagagaatg
accgtctcattaaggatcttcaaggaactctgttcacatgctgaagatccaaaggcagat
gccagcacattcacttcactggtgaagaccatattttaa
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