Polyodon spathula (Mississippi paddlefish): 121321953
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Entry
121321953 CDS
T07273
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04210
Apoptosis
pspa04218
Cellular senescence
pspa04620
Toll-like receptor signaling pathway
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa04623
Cytosolic DNA-sensing pathway
pspa04625
C-type lectin receptor signaling pathway
pspa04920
Adipocytokine signaling pathway
pspa05132
Salmonella infection
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121321953
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121321953
04218 Cellular senescence
121321953
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121321953
04621 NOD-like receptor signaling pathway
121321953
04622 RIG-I-like receptor signaling pathway
121321953
04623 Cytosolic DNA-sensing pathway
121321953
04625 C-type lectin receptor signaling pathway
121321953
09152 Endocrine system
04920 Adipocytokine signaling pathway
121321953
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121321953
09171 Infectious disease: bacterial
05132 Salmonella infection
121321953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121321953
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121321953
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121321953
NCBI-ProteinID:
XP_041117277
LinkDB
All DBs
Position
1:complement(71095368..71139265)
Genome browser
AA seq
980 aa
AA seq
DB search
MADEESYLGGQGHHMFEIDPFSSLIGMEPFTFPNMSTTNSLRIADGPYLQIIEQPKQRGF
RFRYGCEGPSHGGLPGASSEKNRKSFPQVKICNYQGPAKIVIQLVTYSKEVHLHAHSLVG
KQCDKGICVADLQPKDTSMSFPNLGILHVTKKNVTKTLEDRMTEAYRLGYNYGISIHPEI
NSLQTEGQVPRELTDHQRSLIANAAISQTKEMDLSVVQLMFTAFLPDSDGGFTRRLDPVI
SDPIFDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDETGGYWE
TFGDFSPTDVHRQFAIVFKTPKYRDLNLQTPTSVFVQLKRKSDNETSEPKPFTYHPQVID
KEEVQRKRQKTLPSFPDYGSGAGGGGGGMYGGAGGAPGTGGAGFNYQGYSNYNNFGSRYP
YSGGPSSSGAAMKHASKGHADDGDDSDLDDDSEAQGNPKTSCQKKSEDVQKVSEEESTSD
GADQGPTEESLKTEETKSRVDRLFVEKAMQLAKRHGDALFNYAITGDVRMLLAIQRPLVA
VQDGKGDTGLHLGVINHRSESAKNLIEVISRIPGEDVINMRNDLYQPPLHLAVITQQADT
VEALLKASADLSLPDCHGNTALHLAAKQGKSKILSLLLQQQEAAELIKLPNSEGLSALHL
AVLANSLPSLRQLISYGVDVEECEQSSGQTVLHLAVEQENISLAGSLLLEGSARVDSSTY
VGSTPLHIAAGRGSVKMTALLIAAGADAHKANCEPLYDTDDRGYEEEQEGDEDEGFVPGT
TPLDMAFTDEVFDLLNGKQYEPKLQSSSLPGDMNDLSEEAKQELYKVLELPGKSWEVLAQ
WLGLGVLNSAFKLSPSPAKTLLENYEVSGGTIMELLDGLKSVGNSEAVDIVQKALSGAAQ
KNKDSPALVEQQAGAQLQNGLQDLKNYSSEDNIAYDSGIETYFRRFSLCSSESLNCTPEE
LGLSGISKVPKQGFVVEGEL
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaagagtcttatctgggaggacaaggtcaccatatgtttgaaatagatccg
ttttcatctttaattggaatggagccttttacttttcctaacatgtcaaccacaaattca
ctacgaatagcagatggaccatacctccaaattatagaacaacctaaacagagaggcttt
cgtttccgctacgggtgtgagggaccatcgcacggtggattgcctggagcctcaagtgag
aagaacaggaaatccttcccacaagttaagatatgcaactatcagggaccagcaaagatt
gtcattcagcttgtgacctattccaaagaggtacacctgcatgcgcacagcctggttgga
aagcagtgtgacaaaggcatatgtgtggctgacctgcaacccaaagatacaagcatgagt
tttccaaacctgggtattcttcatgtcactaaaaagaacgttaccaagaccttggaggac
agaatgactgaggcgtacagattgggctacaactacggcatctctattcacccagaaata
aattctttacaaaccgaggggcaagtaccaagagaactcacagatcaccagagaagcctc
attgctaatgctgccatcagtcaaaccaaggaaatggatctcagtgtggttcagctaatg
ttcacagcattcctgcctgacagtgatggtggattcacaaggcggctggaccccgtcatt
tcagatccaatttttgacagcaaagccccaaatgcctccaatttaaagattgtgaggatg
gaccgcacagctggctgtgttaccgggggtgaagaggtctatctgctttgtgataaagtt
caaaaagatgacatccaagttcggttctatgaggaggatgaaacaggaggatactgggaa
acgtttggagatttttcgccaacagacgtgcacagacagtttgctatagtctttaagact
ccaaaataccgggacctcaatttgcaaacaccaacctctgtgtttgtccagctgaaaaga
aagtctgataatgagacaagtgaaccaaagcccttcacttaccatccacaggttatagat
aaggaggaggtccagaggaagcgtcagaagacactgcccagctttccggattatggttca
ggagctggtggagggggaggagggatgtacggtggggcaggaggggctccgggaacagga
ggggctggattcaattaccaaggatactcaaactataataattttggaagccgctatcca
tattctggtggtcccagcagctctggtgctgcaatgaaacatgcttcaaagggccatgca
gatgatggcgatgacagtgacttggatgatgatagtgaggcccagggtaatccgaagact
agctgccagaagaagtcagaagatgtgcaaaaagtctctgaggaggagagtacatcagat
ggagcggatcagggccctaccgaagaatcactgaagacggaagaaactaaaagcagagtc
gaccgactgttcgttgaaaaggctatgcagcttgctaagcgacatggggacgcgctcttt
aattacgccatcactggggatgtgagaatgttgctggctattcagagacccctcgtggca
gttcaggatggaaaaggagatactggcttgcaccttggtgttatcaaccacagatctgag
tctgccaaaaatcttattgaagtgatttcccgtattcctggggaggatgtgatcaacatg
aggaatgacctctaccagcctcctttacacttggctgttattacacagcaagcagacact
gtggaagctttgttaaaagccagtgctgatttaagtctcccagattgccatggcaacaca
gctttacacctggctgccaagcaaggaaagtcaaagattctgagccttctactccaacag
caggaagcagctgaactgattaaacttcctaacagtgaaggtttgagtgctcttcatttg
gcagtgctggccaatagcttaccatctcttagacagcttatctcttatggagtggatgtt
gaagagtgcgagcagagctctggccaaactgtactacacctggcagtagagcaggagaac
atctctttagctggaagtcttctccttgagggcagtgctcgagtggattcctctacatac
gttgggtctactccactccacatagcagctggaaggggctccgtcaaaatgacagcgctt
ctcattgcagctggagcagatgcacataaagcgaactgcgaacccctatatgatactgat
gacagaggctatgaagaggagcaggagggggatgaggatgaagggtttgttccagggacc
actcctttggacatggcattcactgatgaggtctttgatctactgaatggaaaacagtat
gaaccaaagttacagtcttccagtttaccaggtgatatgaatgatctcagtgaagaagct
aagcaggagctgtacaaagtcctggagctgcctggtaagagttgggaggtcctggcacag
tggctaggattaggagttctaaacagtgccttcaaattaagcccatcaccagccaaaaca
ctactggagaactacgaggtttctggtggtactataatggaactgctagatggtttaaaa
tcagtggggaactcagaagctgttgatattgttcagaaagctctgtctggtgcagcgcag
aagaacaaggactcgcctgctcttgtagaacagcaggcaggtgcccagcttcaaaatgga
ttgcaggatctcaagaactacagcagtgaagacaatatcgcatacgacagtgggatagaa
acatattttaggaggtttagcctctgttcttccgagtcgctgaattgcactccagaagaa
ttgggactgtctggaatatccaaggtccctaagcaaggctttgttgttgagggagaatta
taa
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