Polyodon spathula (Mississippi paddlefish): 121330550
Help
Entry
121330550 CDS
T07273
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2A-like
KO
K05209
glutamate receptor ionotropic, NMDA 2A
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04020
Calcium signaling pathway
pspa04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
121330550
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121330550
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121330550
Ion channels [BR:
pspa04040
]
Ligand-gated channels
Glutamate (ionotropic)
121330550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
121330550
NCBI-ProteinID:
XP_041133077
LinkDB
All DBs
Position
18:569710..643855
Genome browser
AA seq
1504 aa
AA seq
DB search
MWERDTGMKLTNMGNFGLFLLVLPALLAQYSPARGAEKSYPVLNIAVILGRNRYITERDI
RGLWVKDMFPEVTLDVNVVTVLVNQTDPKSIITHICDLMSGTKIHGVVFGDDTDQEAVAQ
ILDFISSQTFIPILGIHGGSSMIMADKDQMSTFFQFGASIQQEALLMLNIMKEYDWHVFS
VVTSKFPGYQDFLNIIKTTVDNSFVGWDLQNMITLDAVAGDMKTQIQLKKIHSNVVLLYC
SKDEASYILEEARSLGLTGYGFVWIVPSLSTGNTEITPDEFPSGMISVSYDDWDYPLETR
VRDGLGIITSAAAAMLDQYSFIPEAKTSCYGQLEQNELPSNALHKFMMNVTWNGRDLSFT
DDGYQANPKLVVIVLNKDRVWEKVGRWENSSLSLKYPVWPRYNSFGDAEADDNHLSIVTL
EEAPFVIVENVDALTGTCMRNSVPCRKHIKQDNTTNEGTYVKKCCKGFCIDILKKIAKAV
KFTYDLYLVMNGKHGKKINHVWNGMVGEVVYKRAVMAVGSLTINEERSEVIDFSVPFVET
GISVMVPRSNGTVSPSAFLEPFSASVWVMMFVMLLIVTAMAVFIFEYVSPMGFNRNLAQG
RDPHGPSFTIGKAIWLLWGLVFNNSVPVQNPRGTASKIMVSVWAFFAVIFLASYTANLAA
FMIQEEFVDQVTGLSDNKFQRPYDYSPPFRFGTVPNGSTERNIRNNYPDMHQYMVKYHQR
GVQDALVSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGYVFATTGYGIALQKGSFW
KRQVDLALLALVGDGEMEELEAQWLTGICHHEKNEVMSSQLDIDNMAGVFYMLAAAMTLS
LITFIWEHLFYWKLRFCFTGVCDGTPGFLFSISRGIWSCIHGVHIEEKKKSSDLDFSSPQ
ANMLKLIKSAKNMTNMTNLSSSRINSPKQTSDFTHRGSLMMDMVGDKGNFHFADNRSYPA
KEALYPDNVSELQSFMGNRHQDILNNYIFQSQHPLTLNESNPNTVEVAVSAETAPANPKP
RQLWKKSVETLRQNPGPVQESLPVDQRHSIKSQRYLPEEAAHSDVSECSSRAVSYKDPDN
NQKHHKPKDNLKKRSMTSKYPRDCSEVELSYLKNKQSGSTREKIYTIDAERELGLHGDQH
LYRENRLPEDLEYPSELYQDHNDNYRKPEPIIHLNSSPLHPQEIIPNNENKYSLYNKHYS
LKEKNVSPHETNDRYKQTHCRSCLSKVPNYSGHFAVRSPYNRCEACVHMGNLYDIREDQM
LQESLNPMLQESLNPMLQESLNPMLQESMNPMLQESLNPMLQDEMFGQHWPQTDGPQVQK
RNRLRLSRQHSFDNLLEKPREIDLGRPARSVSLKEKDRLLEDSPYANMFNLKPDKLFDSK
PTFFNHNLEESKRSKSLYPDHSSENPFLHPFQEDQRFFHGRSSYDIYRQSAPARLRNDNN
FRSSVKSTASYCSRDGRIPNDMYISEHVMPYVANKTSAYSTPRVLNSCSNRCVYKKMPSI
ESDV
NT seq
4515 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaaagagatactgggatgaagctgaccaacatggggaattttggcttatttctt
ttggtgcttccagctcttctggcccagtacagcccggctcgtggagcggagaagtcctac
cccgtcctgaacattgctgttattttagggcggaaccgttacatcacagagagggacatc
cggggcctgtgggtcaaggacatgttccccgaggtgacccttgacgtcaatgtggtcact
gtcctggtcaaccagaccgacccaaaaagtatcataactcacatctgtgacctgatgtct
ggaaccaaaatccatggggtggtttttggggacgacacagaccaggaagcggttgctcag
attttggattttatttcgtcccagactttcatacccatcctgggaatccacggggggtcc
tccatgatcatggcagacaaggatcagatgtccacgttcttccagttcggggcttctatt
cagcaggaagccctcctgatgctaaacatcatgaaggaatacgactggcacgtgttctct
gtagtgaccagcaagttcccggggtatcaggatttcctcaacatcataaagaccacggtg
gacaacagcttcgtagggtgggatttacagaacatgatcactctggatgccgtggccggg
gatatgaagacccagatccagctgaagaagatccattccaacgtggtcctgctgtactgc
tcgaaggacgaagcgagctacatcctggaggaggctcgctcgttgggcttgacaggatac
ggcttcgtctggattgtccccagcttgagcacgggcaacactgagatcactcctgacgag
ttcccgtccgggatgatttcggtttcgtacgacgactgggactaccccctggaaaccagg
gtgcgggacggcctggggattataaccagcgctgccgctgccatgctggatcaatacagc
ttcattccggaggcgaagaccagctgctacggacaactagagcaaaacgaactgccttcc
aatgccttgcacaaatttatgatgaatgtgacctggaatggcagagacttgtccttcaca
gatgatggctatcaagcaaaccccaagctagttgtcatagttttgaacaaggacagggtt
tgggagaaggtggggcgctgggagaacagtagcctatctctgaagtaccccgtgtggccc
cggtacaactccttcggggacgcagaggccgatgacaaccacctgagcatcgtcaccttg
gaggaggcacccttcgtcatcgtggagaacgtggacgcgctcactgggacctgcatgagg
aactctgtgccctgccggaagcacatcaagcaggacaacacaacgaacgaagggacctac
gttaagaaatgctgcaaaggattctgcatcgacatcctgaagaagatcgccaaggctgtg
aagttcacctatgacctttacttggtgatgaatgggaagcatggtaaaaagatcaaccat
gtgtggaatggaatggttggtgaagtggtctacaagcgtgctgtcatggctgtggggtct
ctcacgatcaacgaagagcgctccgaggtcatcgacttttcagtcccctttgttgaaact
gggataagcgtcatggtgccaagaagtaacgggacggtttccccatctgcttttctagaa
cccttcagtgcttcggtgtgggtgatgatgttcgtcatgctgctcattgtcacagccatg
gctgtctttatatttgagtacgtcagtcccatgggcttcaacaggaatctagcgcaaggc
agagacccccacggcccatcgttcaccattggaaaagcgatatggctgctctgggggctg
gtgtttaataactctgtgccagtgcagaaccccagaggaacagccagtaaaatcatggtt
tcggtctgggctttctttgctgtcatctttctggccagctacactgctaacctggcagcc
ttcatgatccaagaggagtttgttgaccaggtgactgggctcagtgacaataagtttcag
agaccctatgactactctcctcccttccggtttggtactgttcccaatggaagcaccgaa
aggaacattcgaaacaactaccctgacatgcaccagtacatggtgaagtatcaccagaga
ggcgtgcaggatgctctggtcagcctcaagacaggaaagttggatgcattcatatatgat
gcggctgttttaaactacatggccgggagagacgagggctgtaagctggttaccattggc
agcggctatgtctttgcaactacgggctacgggatcgctctgcagaagggctccttttgg
aaacggcaggtggatctagctctgctggccctggttggagacggtgagatggaggagctg
gaggcccaatggctgactggcatctgtcaccatgagaagaacgaagtgatgagcagccag
ctggacattgacaacatggccggggtcttctacatgctcgctgcggccatgaccctcagc
ctcatcaccttcatctgggagcacctgttttactggaagcttcgattctgcttcacggga
gtctgcgacggaacgcctgggttcctgttctcaataagcagaggaatttggagctgtatt
catggtgttcatattgaagaaaagaaaaaatcctctgacttggacttcagcagtccacag
gccaacatgctgaagttaattaagtcagccaaaaacatgaccaacatgacaaacctgagc
tcatcaaggatcaattctcccaagcaaacctctgacttcactcacagagggtccctgatg
atggacatggtgggtgacaaaggaaacttccatttcgctgacaaccggagctaccctgca
aaagaggctctctaccctgacaacgtgagcgaactgcagtcgtttatgggaaatcgccac
caagacatcctaaacaactacatctttcagagccagcaccccctgactctgaacgagtcc
aatcccaacactgtggaggtggccgtcagcgccgagaccgccccagccaaccccaaaccc
cggcagctttggaagaagtctgtggaaacgctgcggcaaaatccggggcccgtgcaagag
tccctcccggtcgaccagaggcattctattaaaagccagcggtacctgccagaagaggca
gctcattctgatgtgtctgagtgctcgagcagagctgtttcctacaaggacccagataac
aaccagaagcaccacaagcccaaggacaacttaaaaaaaagatcgatgacatcaaaatac
cctagggactgcagcgaagtggagctgtcctacttaaagaataagcagagcggctccaca
cgcgaaaagatttacaccatagatgctgaaagggagctgggtttgcatggagaccagcac
ctttatagggaaaataggcttccggaggacttagagtacccctccgaattgtaccaagat
cacaatgacaactacaggaaaccagaacccatcatccatctcaacagcagcccccttcac
ccccaagagatcatccccaacaacgaaaacaagtacagtctgtacaacaagcactacagc
ttgaaagaaaaaaatgtgagccctcacgagacaaacgacaggtacaaacagactcactgc
cggagctgtctttccaaggtgccaaattactcgggacattttgccgtcaggtctccttac
aaccgctgcgaggcctgcgtgcacatggggaacttgtatgacatcagagaagatcaaatg
ctgcaggaatcactgaaccccatgctgcaggaatcactgaaccccatgctgcaggaatca
ctgaatcccatgctgcaggagtcaatgaaccccatgctgcaggaatcactgaaccccatg
ctgcaggacgaaatgtttggccagcactggccccagactgatgggccacaggtacagaag
aggaatagactgaggctgagcaggcagcattcctttgacaatctcctggagaaacccagg
gagatagacctaggcaggccggcacggagcgtgagcttgaaggagaaggacaggcttctc
gaggacagcccttatgcaaacatgtttaatctcaaaccagacaagctgttcgacagcaag
cccaccttcttcaaccacaacctggaggagagcaaacgcagtaagtccctttatcccgat
cacagctcagagaaccctttcctccaccctttccaagaagaccagcgcttcttccatggc
agaagctcttatgacatttatagacaatcggcccccgccaggttgaggaatgacaacaac
tttaggtcttcggtgaagtcgacagcctcgtactgttctcgggatggtcgaatacctaat
gacatgtacatttcagagcatgttatgccttatgtagcaaataagactagcgcatactcc
actcccagggttctgaattcttgcagcaatagatgtgtgtacaagaaaatgcctagtatt
gaatcagatgtttaa
DBGET
integrated database retrieval system
