Punctularia strigosozonata: PUNSTDRAFT_87965
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Entry
PUNSTDRAFT_87965 CDS
T03131
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
psq
Punctularia strigosozonata
Pathway
psq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PUNSTDRAFT_87965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psq03400
]
PUNSTDRAFT_87965
DNA repair and recombination proteins [BR:
psq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PUNSTDRAFT_87965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
DUF1604
Motif
Other DBs
NCBI-GeneID:
18886308
NCBI-ProteinID:
XP_007384475
JGI:
87965
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MLSDEEEEATRKDLSAARNAGKRKIVLESDSDDEVQPSNSKNKKAPGAVHFLLPSHALSP
TKSILLFLARSEENELSESAKASFSSSLSKFTKSPVKSTRRLSRSRASDDDDFVVPDDES
DSPPPSVKSGKSSRSSRSATLSSDADDFLDDDEDEDEAPKKSKGKKKAPAVERPKLAKEA
SSQGGSSSFLTAAERRLKEAKEEKKTKEDPYAFLLDPKDRDGVRPGEPGYDPRTLHIPAK
AWKEFTPFEKQFWEIKQNHFDTVLFFQKGKFLELYEDDARIGHREFDLKLTNRVKMCMVG
VPESSFNFWAAKFLAKGYKVGRVDQSETALGAEMRLAADKAKGGPKGKADKIVQRELNKV
YTNGTLVDAELLIDEEAGHCVSIREHAPDPENPADAKKESTFGVAVLDSSTSEFNLSAFE
DDVCRTKLETLLRQLRPKEIIFTKGNLSVSTNRLLKATLPEGCLWTSLRDVEGFDYDQTL
KELAELYPATGNAMRDEDDPVGGDVPEAIRDMYASKPAIEALGSLIWYLRQLNIDKDILS
MKNFNIYDPMKRGQGLVLDGQTLAHIEVLRNSDGTEDGSLLKLLGRCITPFGKRLFRIWL
CMPLKRVEDINARLDAVQDLLDNPSFEQMFTELAKGLPDLERIVSRIHANNCTVKDFLKV
LQAFKKLSNGLSSLADVAAEFDSKMITGLLRSAPDLTPNLKNVQSMFKKPAEGSGELEPM
DGKDEEYDNVMSEIARLEKALEKKLKQLEDEVGTDLTYWHSALGTKDIYLVQTKASFKNI
PKQWTKHGATKAAARWTVPALAGTIRALKEARENRNTAIKQFKNRLFAEFDADRGVWLRA
IRVLAELDCLFSLAKSSTALGEPICRPELVEGDAAFVDFEELRHPALLASSSLKGDFIPN
DVRLGGDVGRIVLLTASNSGKSTAMRMTAAGVIMAQLGMMVPARSAKLCPVDAILTRMGA
YDNMFSNASTFKVELDESCKILREATPKSLVILDELGRGTSTYDGMAIAGAVLHELATHT
LALSFFATHYGSLTDDFAYHPNIRNMHMATMVDDEQQELVFLYKLVDGIASSSFGTHVAK
LAGVPSDVVQRAAVVSEDFARQFKEKLANNVRKKRNGSSRVPLNVQSDFAYLVKLAMGVT
KLPEDPVRKRETLVVMKKAVASCLLASGASVASS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcagacgaggaggaggaggcgacaaggaaggacctatctgctgcccgtaacgca
ggaaagcgcaaaatcgtcctggagtcagattcggacgacgaagtccaaccatccaactcg
aaaaacaagaaagctccaggtgccgtccatttcctcttaccctctcatgccttatcacca
accaaatcaatccttttattcttagcccgatccgaggaaaatgagctctccgagtctgca
aaggcttccttctcctccagcttgagcaagttcacgaagtcacccgtcaaatctacgcgt
cgtctgtcccgctctcgggcgtccgatgacgatgacttcgttgtccccgacgacgagtcg
gactcgccccctccctcggtcaagtccgggaaatcttcccgatccagtcgttctgcgacg
ttgtcgtcagacgcagacgactttctcgacgacgacgaagatgaagatgaggcgccgaag
aagagcaagggcaagaagaaggcacccgccgtggaacggcccaagttggccaaagaggcg
agcagccagggtggaagcagctctttcctcacggctgccgagcggcgcctgaaagaagcg
aaggaggagaaaaagactaaggaggatccatatgcgttcctcctcgatccgaaagacagg
gacggcgtgcggccgggcgaacccgggtatgatccgcgcacgttgcatataccggcgaag
gcgtggaaggagttcacaccattcgaaaaacagttttgggagatcaaacagaatcatttc
gacacggtgttgttcttccagaaagggaaattcctggagttgtacgaggatgatgctcgg
attggacatcgcgaattcgacctcaagcttaccaacagagtaaagatgtgcatggttggg
gtacctgagtcttcattcaatttctgggctgcgaagttccttgccaaaggatataaggtc
ggtcgtgtggatcaatcagagactgccctcggcgcagagatgcgtctggcagccgacaag
gcgaagggcgggcccaagggtaaagcggacaagatcgttcagcgagaactgaataaggtg
tatacaaacggcacccttgtggacgcagaactgcttatcgacgaagaagctggccactgc
gtatccatccgcgaacacgctcctgaccctgagaacccggccgacgcgaagaaagaaagt
actttcggcgttgcagtcttggacagctctacgagcgagttcaatctgagcgcatttgaa
gatgatgtgtgtaggaccaagctcgaaacgttgctgcgacaactacgaccaaaggagatc
atcttcacaaagggcaatctttcggtttcgacgaaccgcctcctgaaggctactcttccg
gaaggatgcctctggacgagccttcgcgatgtcgaaggcttcgactacgatcaaacactg
aaagagctggcagagctataccccgccaccgggaatgctatgagagacgaagatgatcct
gttggtggcgatgtcccggaggcgatacgcgacatgtatgcgtccaagccggcaatcgag
gcattagggtccctgatctggtatctgcgccaacttaacatcgacaaggatatactgagc
atgaagaacttcaacatttacgatccgatgaagcgaggccagggacttgtattagacggg
caaacgttggcgcatatagaggtgcttcggaacagcgacggcactgaggacggctcgttg
ttaaaactgctcggccgatgcatcacaccttttggtaaacgtctcttccgtatttggctc
tgtatgcccctcaagagggtagaagatatcaacgccagactcgacgccgttcaggacctc
ttagacaatccgtcctttgagcagatgttcacggaactcgccaaaggtcttcctgatctg
gaacgtatcgtctctcgcattcatgccaataactgtactgtcaaggatttcctgaaggtt
ctccaggccttcaaaaaactcagcaacggcctctcctccctcgcagatgtggcagctgaa
tttgactcgaagatgatcaccggcttactgcgttcggcacccgatctcacgcctaacctc
aagaatgtgcaatctatgttcaagaagccagccgaaggtagcggagaactggaacctatg
gacgggaaagacgaggaatacgataatgtaatgtccgaaattgctcgtttggagaaggct
ctggagaagaagctcaaacaacttgaggacgaagtcggaaccgacttgacgtactggcat
agcgccttgggaaccaaagacatatacttggtccaaaccaaggcaagcttcaagaacatc
ccgaagcagtggaccaagcatggagccaccaaggctgctgcgcgttggactgtccctgcg
ctggcgggcaccatccgcgccttgaaagaagcccgtgagaaccgcaacactgcgatcaag
cagttcaagaaccggctgttcgccgagttcgatgccgacagaggcgtatggcttcgtgcg
atccgcgttcttgccgagttggactgcctgttcagcctcgcgaagagctcgacagccctg
ggcgagcccatctgtcgaccggagctggttgaaggcgacgccgccttcgtcgactttgag
gagttgaggcatcctgcgctgctcgccagttcgagcttgaagggcgacttcattcccaat
gatgtccgtctgggtggtgacgttggcaggattgtccttctaaccgcgtctaacagtgga
aaatcaaccgcaatgcgtatgactgcagccggggtcattatggcgcagctcggtatgatg
gtgccagcacggagtgccaagctttgtcctgtagacgcaattttgacccgaatgggggct
tacgacaacatgttctcgaacgccagtacattcaaggttgaactggacgaaagttgcaag
atcctgcgagaggctacccccaagtcgctcgtgattctggatgaactgggccgcggaacg
tctacatacgatggcatggctatcgccggtgccgtcctgcacgagttggcgacacatacg
ctcgctttgtccttcttcgccacgcattatggatcattgaccgacgacttcgcctatcat
ccgaacatccgaaatatgcacatggccaccatggtcgacgatgaacaacaagagctcgtg
ttcctctacaagctcgtggacggcatcgcctcctcctccttcggcacgcacgtcgctaaa
ctcgccggcgtcccctccgacgtcgtgcagcgtgcggccgtcgtctccgaagacttcgcg
cgccaattcaaggagaagctcgcgaacaacgtgcgtaagaaacggaacggatcctcgcgc
gtgccgttgaacgtgcaaagcgatttcgcgtatctggtgaagctggcgatgggcgtaacg
aagctgccggaggacccggtgaggaaaagggagacgttggtggtgatgaagaaggctgtg
gcgagctgtctgctcgcgtctggcgcgtccgtggcgtcgtcctga
DBGET
integrated database retrieval system
