Pelodiscus sinensis (Chinese soft-shelled turtle): 102456308
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Entry
102456308 CDS
T02980
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102456308 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pss03400
]
102456308 (MSH6)
DNA repair and recombination proteins [BR:
pss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102456308 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
102456308
NCBI-ProteinID:
XP_006131820
Ensembl:
ENSPSIG00000004960
LinkDB
All DBs
Position
Unknown
AA seq
1307 aa
AA seq
DB search
MACFSEVLSIQLLGTCHLLIKLYLCVCSVSCDYSPGDLVWAKMEGYPWWPCLVYNHPTEG
TLVRVKGKSSRVHVQFFDESPTRGWVSVKYLKPYKGSAVKETERGGMFYSSKPEIKRAME
MADDAMRKDKTKRLELAVCNEPSDAEDEEEMEVSESASGNSEDYDSEDEERKKKLLGSKW
RSGGKAKKRRVLDSDSDNEGSDEEFKPDAKDEASSDEASSRLEEGESASSESDTKMDTDG
SVKVPSKRKRESDFKPTKRNSLEKDLPETPKRAVTISLEIKSRLTSFVAPENFESQPNVS
SGGVSSSNIWEHDKLEWLQEGKKRDGCRRRQTDPHYDPGTLYVPDDYLNKCTPGMRKWWQ
LKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMKGIWAHSGFPEIAFGRFSDVLVQ
KGYKVVRVEQTETPEMMEARCRSLAHPTKFDRVVRREICRIITKGTQTYGVLDGEPSEEL
NKYLLSVKEKVEDSSGHYRAYGVCFVDTSVGKFSVGQFPDDRHCSRFRTLVAHYTPVQIL
FEKGNLSADTHKILKGSLSSSMQEGLISGTQFWNASKTLKTLIEEGYFEDKQNVDNGFIL
PPVIKSITLESDSILGLAPAENCGLALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDI
DVTKAKGSNSFFAKTNQRMVLDGVTLTNLEILQNGTTGTTEGTLLEKIDTCCTPFGKRLL
KRWICAPLCNPHSINDRLDAIEDLVAVPDKMFEVSECLKKLPDLKRLLNKIHSIGSPLKS
DTHRDNRAIFYEETRYSKKKITDFLSALEGFKIMLETIEIMEEIAADFRSKILKQLVTLK
SKNPEGCFPDLSAELKRWDTAFDHNEARKTGVITPKAGFDPDYDTALKDITDIEEKLQEY
LVKQRKRLGLRAMLYWGAGKNRYQMEIPENAISHNLPEEYELKSTRKGYKRYWTKEIEKM
LAEMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECFAVLDVLMCLARYSQESDGPF
CRPVLLLPELSTPPFLELKGSRHPCITKTFFGDDFIPNDIVIGSKNEDEDCNSEAYCVLV
TGPNMGGKSTLMRQAGLLVIMAQLGCYVPAETCRLTPIDRVFTRLGASDRIMSGESTFFV
ELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAENIKCRTLFSTHYYSL
VEDYSHSAAVRLGHMACMVEKENEDPSQETITFLYKFIRGACPKSYGFNAAKLANIPEEI
IQKGHKKARDFEKVTLSLRLFRHLCLVAENAGRDKAVHKLMTAFNNL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcctgcttttcagaagtactcagcatccaactattggggacttgtcatctgttaatc
aagctgtatctttgtgtttgcagtgtctcctgtgattattcacctggtgatttggtttgg
gctaagatggaagggtacccctggtggccatgtcttgtgtataaccacccaactgaagga
acactagtcagagtgaaaggaaaatcttcccgtgtgcatgtacagttttttgatgagagc
ccaacaaggggctgggttagcgttaaatacttaaagccatataaagggtcagcagttaag
gaaacagagaggggaggtatgttttatagttcaaagcctgaaattaagagagcaatggaa
atggcagatgatgctatgcgcaaagataaaactaagcggcttgaactggcagtatgcaat
gaaccttcagatgctgaagatgaggaagagatggaggttagtgaaagtgcttctggcaac
agtgaagattatgatagcgaggatgaggagagaaaaaaaaagctgctgggaagcaagtgg
agaagtggcgggaaagctaaaaaacgaagagtgttggactccgacagtgataatgaaggt
tcagatgaagagtttaagccagatgctaaagatgaagcaagcagtgatgaagcaagcagc
agactggaggaaggtgaatctgccagctctgagtcagacacaaagatggatacagatggt
tctgtgaaagtcccttctaaacgaaagagagaatctgacttcaagcccactaaaaggaac
agcttggaaaaggaccttcctgaaacaccaaaaagagcggtaactatttcattagaaatc
aagtcaaggcttacctcttttgtagcacctgaaaactttgagtctcagccaaatgttagc
agtggaggagttagtagttctaatatatgggaacatgataaacttgaatggcttcaggaa
gggaaaaaaagagatggatgtagaagacggcaaactgatcctcattatgacccaggtacc
ctttatgtgccagatgactaccttaacaagtgtaccccaggaatgcggaagtggtggcag
ctaaagtctcaaaactttgatgctgtaatcttctacaaagttgggaagttctatgagttg
tatcatatggatgcagtcactggtgtaaatgagctgggactgatatttatgaaaggtatt
tgggcccattcaggttttccagaaattgcatttggcagattttctgatgttctagtacaa
aaggggtacaaagtagtccgggttgagcagacagagactcctgagatgatggaagcacgc
tgcagatccctggcccacccaacgaagtttgacagggttgtacgcagagaaatatgcagg
ataattaccaaaggaacacagacctatggtgttctggatggtgaaccttctgaggaactt
aacaaataccttctcagtgtaaaagaaaaagttgaagactcatctgggcactaccgtgca
tatggtgtctgttttgttgacacatcagtgggaaaattttctgtgggccagtttccagat
gaccgccactgctcaagattcagaactttggtggcacactacactcctgtgcagatcctg
tttgagaagggaaatctgtctgctgacacccacaagatactaaagggctcactgtcgtct
tccatgcaagaaggcttgatctctggcacccagttctggaatgcatctaaaacattgaaa
actctaattgaagagggatactttgaggataagcaaaatgttgataatgggtttattttg
cctcctgtgatcaaatctatcacattagaaagtgactctatcctgggtcttgctcctgcc
gaaaactgtgggttagctctgtcagctcttggtggatgtgtcttttacctcaagaaatgc
cttattgatcaggagcttttatctctggcaaactttgaggagtatgttcctgtggatatt
gatgttacaaaagctaagggatcaaacagtttttttgctaaaactaatcagcggatggtg
ttggatggggtgacgctaacaaacttggaaatcctgcagaatggaactactggcactaca
gaaggcacattgctggaaaagattgacacttgttgtaccccttttggaaagcgactcttg
aaacggtggatatgtgcacccctctgtaatccacattctatcaatgatcgtttggatgca
attgaagatcttgtggcagttcctgataaaatgtttgaagttagtgaatgcctgaagaaa
cttccagaccttaaaaggctcctgaacaaaattcacagtattggatcaccacttaaaagt
gatactcatcgagacaacagggctattttttatgaagaaaccagatacagcaaaaaaaag
atcactgacttcttgtctgcactggaaggatttaagataatgcttgagaccatagagatt
atggaagaaattgctgctgatttcagatctaaaatacttaagcagttagtcaccctcaag
tctaaaaatccagagggctgttttccagacctgagtgcagaactgaaaagatgggatact
gcttttgatcataatgaggctcgaaagactggagtgatcacacctaaggctggatttgac
ccagattatgatacagcattaaaggatattacagacattgaagagaaacttcaggaatat
ttagttaaacaacgcaaacgacttggactcagagctatgctgtattggggagcaggcaaa
aaccgctaccaaatggaaatcccagaaaatgcaatatcacataatttgcctgaggaatat
gaactgaagtccaccagaaagggttataaacgttattggaccaaggagatagagaagatg
ctggcagagatggtcaatgctgaagaacggagagatgcagccctgaaagactgtatgagg
agactgttctacaactttgataaaaatagcaaggactggcaaacagcagtggaatgcttt
gctgtattagatgtcttgatgtgccttgctcgctatagtcaagagagtgatggaccattc
tgccgacctgtacttctactgccagaactgagtactccacctttcttggaacttaaaggt
tcacgccatccatgcattacaaaaacattttttggagatgattttattccgaatgatatt
gtgattggctccaaaaatgaagatgaagactgcaatagtgaagcctactgtgttttagtg
actggcccaaacatgggtggcaaatctacattaatgagacaggctggccttttggtaata
atggctcaattgggatgctatgtacctgctgaaacttgcaggcttactcctattgacaga
gtatttacaagactaggtgcctcggacagaattatgtcaggagagagtaccttttttgtt
gaactgagcgagacttccagtatactccagcatgcaacagagcattcccttgtgcttgtg
gatgaactaggtagagggacggctacttttgatggtaccgctatagcaagtgcagttgtt
aaagaacttgcagaaaatataaagtgtcgtacactgttttcaacacactattattcatta
gtagaggactattcacatagtgctgctgtgcgactaggccatatggcctgtatggttgaa
aaggagaatgaagatccaagccaagaaactattacattcctttataaattcattagagga
gcttgtcctaaaagctatggcttcaatgcagcaaaacttgctaatattccagaggaaatt
atccagaaaggccataaaaaagccagagactttgagaaagttacactttcactgagactg
tttaggcacctttgcctggtggcagaaaatgcaggaagagataaagctgtacataaactg
atgactgcgttcaataatctgtaa
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