Pseudoliparis swirei (Mariana hadal snailfish): 130188372
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Entry
130188372 CDS
T09868
Symbol
grin2ca
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04020
Calcium signaling pathway
pswi04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
130188372 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
130188372 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130188372 (grin2ca)
Ion channels [BR:
pswi04040
]
Ligand-gated channels
Glutamate (ionotropic)
130188372 (grin2ca)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
130188372
NCBI-ProteinID:
XP_056262682
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All DBs
Position
23:complement(2379609..2439251)
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AA seq
1407 aa
AA seq
DB search
MGVRPGSLSDSPWWPPLLPLLLLLLSSAPFCLGRPFAVPTPSVNVAVVFSGSAYQTEIKG
RLSRENFVDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQIL
DFISTQTAVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVI
TSRYPGYEAYVDYVKSFTDTSYFIWELQDVLTFDMSADGLNDVRARRLLQQVDAQVLLVY
CSHEEAQYLFSMASESRLVGPGYIWIVPSLAVGNPDAAPPDSFPVGLISIITNRWRMSLR
KRVRDGVAIVVKGVQSFRKQRGFVPEGQSDCHNPVRPAVANDTLFRHMLNVTWEHNDFSF
NSNGYLVNPTMIIITLDRERQWDKVGTFEMGIMQMRYPVWPRYGSYLEPVSDYRHLTVAT
LEERPFVIVEAVDPATGTCVSNTVSCRRQSNKTESIVGHTEPYTKLCCKGFCIDILKKLS
RTIRFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPF
VETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYCSPVGYNRSL
VSAKEPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTAN
LAAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKY
NQKGVEDALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKD
SRWKRLIDLALLQFLADGDIQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAM
GLSLLVFAWEHMLYWKLRHSVRKAQRLNFLLAISRGIYSCFNGVEQSDRNGSMPSPDVTA
NYTQANMLKMLKTAKDMVSSARVENSLDNATKTIENWSRRGVDNGRVGPPPPRLTAADVT
HGRLPYISSITDNHSPYSQRXLTPTFSIHYGDCTAQPLLEKPRSAAAPLRYTLPARSSQH
VLERTLPISSLSSPHIAMRDPLPSAASNPHHGSRLYVENPAGHPASPFVSYREFQVPDMY
MEHRGPLRRKFSYPPDCVSRRRRSHSYAFDTADPRVRGDYEEPRSCLAELRANHLLNNHA
PVAAPRRYPGSGAGCNSCMKSYLEPEMDDVPLLGKDKLNRRASFLKATWGNDRIHNVDET
KASTSASCGRVDMPDLFPRGVVANPKPHKLYGSLGHNLSCYPLSAEPAYLDPAHMGSYPY
KQKLKYSQSTQLPSYREAILQNSAALSRSSSSTVVHRHYSTYLNPYTDLPVYVTQRPSSQ
FYDAAKDQCHLFPCASHCPDNAAMLPRAGDRQVVYHDHMFGAYDGTGRRDDPGSGSRERR
QVLVARRVNSAYVPKPWGRVSSLESEV
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtccaggcagtttgagcgactccccttggtggccgccgctgctcccgctg
ctgctgctgctgttgagctccgcccccttctgtttgggccgtccctttgccgtccccacg
ccgtccgtgaacgtggcggtggtgttcagcggctccgcctaccagacggagatcaagggg
cgtctgagccgggagaactttgtggacctgcccctggaggtgaaccccatcaccgtgctg
gtcaacaacaccaacccgcgggcgctgctcacccgcatctgcgacacgctctccaccaac
cgcgtgcatggcgtggtgttcgaggacaacgtgggctccgaggccgtggcgcagatcctg
gacttcatctccacgcagacggccgtgcccatcgtgggcatcagcgggggctccgcggtg
gtcctgccctacaagggcgagggctccaacttcctccagctgggctcctccatcgagcag
cagatcaacggcatgttcaaggtgatggaggagtacaactgggacagcttcgtggtcatc
accagccggtacccgggctacgaggcctacgtggactacgtcaagtccttcacggacacc
agctacttcatctgggagctgcaggacgtgctgaccttcgacatgtcggccgacggcctg
aacgacgtgcgggcgcggcgcctcctgcagcaggtcgacgcccaggtgctgctggtgtac
tgctcccacgaggaggcgcagtacctgttcagcatggcgtccgagtcgcggctggtgggg
ccgggctacatctggatcgtgcccagcctggcggtggggaacccggacgcggcgccgccc
gacagcttccccgtgggcctcatcagcatcatcacgaaccgctggaggatgagcctgagg
aagagggtgcgcgacggcgtggccatcgtggtgaagggcgtgcagagcttccggaagcag
aggggcttcgtgcccgagggccagagcgactgccacaaccccgtccggccggcggtcgcc
aacgacacgctgttcaggcacatgttgaatgtgacctgggagcacaacgacttctccttc
aacagcaacggctacctggtgaacccgaccatgatcatcatcacgctggaccgggagagg
cagtgggacaaggtgggcaccttcgagatgggcatcatgcagatgagatacccggtgtgg
ccgcggtacggctcctacctggagccggtgtcggactacaggcacctgacggtggccacg
ctggaggagcggcccttcgtcatcgtggaggcggtggacccggcgaccggcacctgcgtc
agcaacaccgtgtcgtgccgccggcagtccaacaagaccgagtccattgtgggtcacact
gagccgtacaccaagctgtgctgcaaaggcttctgcatcgacatcctgaagaagttgtcc
cgcaccatcaggttctcctacgacctctacctggtcaccaacggcaagcacggcaagctg
gtccgcggcatctggaacgggatgatcggagaggtgttctacaagcgtgcggacatggcc
atcggctcgctgaccatcaacgaggagcgctccgagatcatcgacttctcggtgccgttc
gtggagacgggcatcagcgtgatggtcgccaggagcaacgggaccgtctcgccatccgcc
ttcttagagccctacagtccggcggtctgggtgatgatgttcgtcatgtgtctgacggtc
gtggccgtcaccgtcttcgtgttcgagtactgcagcccggtcgggtacaaccgcagcctg
gtcagcgccaaagagcccggtggccccaccttcaccatcgggaagtcggtgtggctgctg
tggggcatcgtcttcaacaactcggtgcccatcgagaaccccaaggggaccaccagcaag
atcatggtcctggtctgggccttcttcgccgtcatcttcctcgcctcctacacggccaac
ctggccgccttcatgatccaggagcagtacatcgacacggtgtccggcctgagcgacaag
aagtttcaaaagccacaggagcagtaccctccgttccgctttggcacggtcccaaacggc
agcacggagcgcaacatacggagcaactaccccgagatgcactcccacatggtcaaatac
aaccagaagggagtggaggacgccctcaacagcctcaaaacagggaaactggacgccttc
atctacgacgccgccgtgctgaactacatggctggcaaagacgagggctgcaagctggtg
accatcggcagcgggaaggtgttcgccacgactggatacggcatcgcgctgcagaaggac
tcgcggtggaagcgcctcatcgacctggcgctgctccagttcctggccgacggcgacatc
cagaagctgcagaccgtctggctcacggggatctgccgcaacgagaagaaggaggtgatg
agcagcaagctggacatcgacaacatggcgggcgtcttctacatgctgctcgtggccatg
ggcctgagcctgctggtgttcgcctgggaacacatgctctactggaagctacgccactcg
gtccgcaaagcacagcgcctgaacttcctcctcgccatcagcagaggcatctacagctgc
ttcaacggcgtggagcagagcgaccgcaacggcagcatgccgagtccggacgtcaccgcc
aactacacgcaggccaacatgctcaagatgctgaagacggctaaggacatggtgtcctcc
gcccgggtggagaactccctggacaacgccaccaagacgatagagaactggagccggcgg
ggcgtcgacaacgggcgcgtcggcccgcccccgccccgactgacggccgcggacgtgacc
cacggccgcctgccctacatctccagcatcacggacaaccactcgccctactctcagcgg
ngcctcacccccaccttctccatccactacggggactgcaccgcccagcccctcctggag
aagccccgctcggcggcggccccgctgcgctacacgctgcccgcccgcagcagccagcac
gtcctggagaggactctgcccatctccagcctcagcagccctcacatcgccatgcgggac
ccccttccctccgccgcctccaacccccaccacggcagcaggctgtatgtggagaacccg
gccgggcacccggcgtccccgtttgtttcctacagggagttccaggtgcccgacatgtac
atggagcacagagggccgctgaggaggaagttcagctacccgcccgactgcgtgagccgc
aggaggcggtcccacagctacgcctttgacaccgcggaccccagagtgaggggcgactac
gaggagcctcgatcctgcctcgccgagctgagggccaaccacctcctgaacaaccacgcc
ccggtggccgccccgagacgctacccgggcagcggcgccggctgcaactcctgcatgaag
tcctacctggagcccgagatggacgacgtgccgctcctggggaaggacaagctcaaccgc
cgcgcctccttcctcaaagccacgtggggcaacgaccggatccacaacgtggacgaaaca
aaggcctccacgtccgcgtcctgcggccgcgtagacatgcccgacctgttcccccggggg
gtcgtggccaacccgaagccccacaagctgtacggcagtctggggcacaacctgtcctgc
tacccgttgtctgcagagcccgcctacctggacccggcccacatgggctcctacccctac
aagcagaagctcaagtactcccagtccacccagctaccctcttacagagaagccatcctg
cagaactccgccgccctgagccgctcctcctcctccacggtggtgcacagacactactcc
acctacctgaacccgtacacggacttgccggtgtacgtgacccagagaccctcctcccag
ttctacgacgcggccaaggaccagtgccacttgttcccctgcgcgagccactgcccggac
aacgcggccatgctgcctcgcgcgggggaccggcaggtggtctaccacgaccacatgttc
ggggcctacgacggcaccgggaggcgggacgacccgggctccgggagcagggagcggcgg
caggtgttggtggcccgcagagtcaacagtgcctatgtgccaaagccctggggcagggtg
tcgagcctggagtctgaggtctga
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