Pseudoliparis swirei (Mariana hadal snailfish): 130196466
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Entry
130196466 CDS
T09868
Name
(RefSeq) neurogenic locus notch homolog protein 1-like
KO
K02599
Notch 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
130196466
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
NOD
NODP
Notch
Ank_3
Ank_4
Ank_5
EGF_3
DL-JAG_EGF-like
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
130196466
NCBI-ProteinID:
XP_056274617
LinkDB
All DBs
Position
7:12474647..12515783
Genome browser
AA seq
2497 aa
AA seq
DB search
MPMFFVKLTFLLSLIALTRGLRCSMPTESCLNQGRCEATPDGNGECRCRDGYVGSRCQFR
DPCTTSPCMNGGVCRAVSKGNTVDFNCTCRLGFTDRRCLMPVNNVCISSPCRNGGTCELE
SLKTYKCRCPPGWSGKLCQQADPCASNPCAYGGQCSAIESHYSCACTPFFSGKTCKQDVN
ECDVSQSPCKHGGLCINEVGSYQCQCPPEYTGRHCESRYLPCNPSPCHNGGTCIQRGETS
YECSCVPGFTGKNCNHNIDDCPGHECQNGGTCVDGVNTYNCQCKPEFTGQLCTDDVDECQ
LMPNACQNGGTCHNTYGSYQCVCVNGWTGDDCSENIDDCASAACHTESTCHDRVASFYCE
CPLGRTGLLCQLDDACISNPCQKGSNCDTNPVSGNHFCTCPSGYFGASCDQDVDECSLGS
NPCEHAGKCINTKGSFQCKCQRGYVGPRCELDINECMSNPCMNEATCLDQIGDFHCICMP
GYEGEFCEIDTDECAHSPCLNNGNCIDKINAFHCQCPTGFTGNLCQIDIDECASTPCKNG
AKCTDGPNRYTCECTEGYSGRHCETDINECYSDPCHYGTCIDGLASFSCQCSPGYTGRLC
ETNINECLSQPCRNGGTCQDRENAYMCSCPKGTTGINCEINIDDCKSNPCDYGACIDKIN
GYECACEPGYTGTMCNINIDECAINPCHNGGTCIDGINGFTCACPDGYQDPTCFSQVNEC
LSNPCIHGHCEDKINGYNCLCDSGWSGKNCDINNNECESNPCMNGGTCKDMTSGYVCTCR
MGFTGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCVLPYTGDNCETLMAPCSSRPCKY
GGVCQESEDYQSFSCVCPEGWQGQTCEVDIKECVKNPCRNGATCQNTLGSYHCACKPGFT
GRNCESNIDDCKPNPCSNGGFCKDEVDGFLCTCLAGFRGTKCEEDINECESNPCKNGANC
TDCVNSYTCTCPPGFSGIHCENNTPDCTESSCFNGGSCMDGINTFTCLCPPGFTGSYCQH
DINECDSKPCLNGGTCHDSYGTYKCTCPHGYTGLNCQNLVRWCDSSPCKNRGTCWQRGTT
YSCECEIGWTGLYCDVPSVSCEVAAKQRGVDVAHLCRNSGQCLDAGNVHYCHCQVGYTGS
YCEEQVDECTPNPCQNGATCTDFLGGYTCKCMPGYVGTNCSDEINECFSQPCQNGGTCID
LINTYKCSCPRGSQGVHCEINIDDCNPFADPVTKEPKCFNKGKCVDRVGGYHCICSAGYV
GERCEGDINECLSNPCDPRGTHSCIQLTNNYRCDCRTGYTGQRCDTVFDGCKGKPCRNGG
SCAVASNTPHGFICKCPPGFTGSTCEYDAQACGSLNCRNGGTCISGHKSPKCLCTPSFTG
PECQYPTDSPCNSNPCYNGGMCEYTSEAPFYHCVCPTNFNGLRCHILDYSFQGGFGHDIA
PPPEVEAPCDIPLCEEAKHNKYCDVLCNNHACGWDNGDCSLNFDGPWKNCSAALQCWRYF
NDGKCDSQCDNAGCLYDGFDCQNLEGQCNPLYDQYCKDHYADRHCDQGCNNAECRWDGLD
CANNMPEKLAVGQLVLVVHIPPQQLLNNSFGFLRELSRVLRTNVVFTVDANGETMVYPYY
GNEHELKKYNVKRSLDSWAEVPGKVLSVVKRSVRGVAGGGGRAKRELDHLQIKGSVVHLE
VDNRQCFQQSTECFQSTDDAAAFLGALASSGKLDVPYTIEAVFSGVDPKPSQDLYPIYLV
LGGIGMLAFIAVGMVAARKRHNEHGRLWLPEGFKTTETSKKKRREPVGEDSVGLKPLKNT
SDISLMDDNQNEWGEDEPSDAKRSRFDEQAILEVDDQTDHRQWTQQHLDAADLRIPSIAP
TPPQGEIENDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDASANVINDFIYQGAD
LHNQTDRTGETALHLAARYARSDAAKRLLEASADANVQDNMGRTPLHAAVAADAQGVFQI
LIRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADVNAIDDFGKSALHWAAAVN
NVEAVNVLLKNSANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANREITDHMDRLPRD
IAQERMHHDIVRLMDDYNLVRSPHMHGGSLGTTLSPPLCSPNGYLGGMKQPMPHGHGKKA
RKPSAKEGKDMKVKKKNLQDGKPGSLLDGSGVLSPVDSLESPHGYVSDVASPPMMTSPFQ
QSPSVSLNHLQGMSDAHLSVNHLVMPNKQELARMQFDPLPPRLSHQGAINGQCDWLSRMH
GGMSQPGQFNPMRGAPGGQGGLHPGGQHGMMASLHNGHPAGLSQMMTYQGIQSGRLGPQP
HIMQQQMQQLQKLQQLQQQQQSIQLQHQNSNTTNSQSFISGELSSPELQQGTGNSSMPIH
TILPQETQIMPSSINQSMPSTQFLTPPSQHSYSGPMDNTPNHQVQVPDHPFLTPSPGSPD
QWSSSSPHSNMSDWSEGISSPPTSMQAQIAHLPEQFK
NT seq
7494 nt
NT seq
+upstream
nt +downstream
nt
atgcctatgttctttgtgaaactaactttcttgttgtcgctgatagcactaacacgaggt
ctaagatgctccatgcccacggagtcgtgtttgaaccaggggaggtgtgaagcaacgcca
gatggcaacggggagtgcaggtgccgggacgggtacgtgggaagcaggtgccagttccgc
gacccgtgcaccacatcgccgtgcatgaatggcggcgtgtgccgcgccgtctccaagggc
aacacggtggacttcaactgcacctgcagactgggcttcaccgaccgccgctgcctgatg
cccgtcaacaacgtctgcatcagctcgccgtgtcgcaacggaggcacctgcgagctggag
agtctcaagacgtacaagtgccgctgcccacctggatggtcaggtaaactgtgccaacaa
gccgacccctgtgcctcgaacccgtgcgcctacggtggccagtgctccgccatcgagtcc
cactactcgtgcgcctgcacgcccttcttctccggaaagacgtgcaagcaggacgtcaac
gagtgcgacgtgagccagtcgccctgcaagcacggcgggctgtgcatcaacgaggtcggc
agctaccagtgccagtgcccgcccgagtacacggggaggcactgcgagagccgctacctg
ccctgcaacccgtcgccctgccacaacggaggcacctgcatccagaggggcgagaccagc
tacgagtgctcctgtgtgccaggttttacaggaaaaaactgcaaccacaacatcgacgac
tgcccgggtcacgagtgtcagaacgggggcacgtgtgtcgacggagtcaacacctacaac
tgccagtgcaaaccagagttcacaggtcagctctgcacggacgacgttgatgagtgccag
ctgatgcccaacgcctgccaaaatggcggcacgtgccacaacacctacggcagctaccag
tgcgtgtgcgtgaacggctggacgggcgacgactgcagcgagaacatcgacgactgcgcc
agcgccgcgtgccacacggagtccacgtgtcacgaccgcgtcgcttccttctactgcgag
tgccccctgggacgcacaggactgctgtgccagctggacgacgcctgcatcagcaacccg
tgtcagaaaggctccaactgcgacaccaaccccgtcagcgggaatcacttctgcacctgc
ccgtccggatacttcggagcctcctgcgaccaggacgtggacgagtgctccctgggttcc
aacccgtgcgagcacgcggggaagtgcatcaacaccaaagggtcgttccagtgtaagtgc
cagcggggttacgtggggccgcgctgcgagctggacatcaacgagtgcatgtccaacccg
tgtatgaatgaggccacatgcctggaccagataggagacttccactgtatctgcatgcca
ggttacgagggggagttctgcgagatcgatacggacgagtgcgcccacagcccctgcctg
aacaacggcaactgtatcgacaagatcaacgccttccactgccagtgccccacaggcttc
actgggaacctttgccagatagacatcgacgagtgtgccagcacgccatgcaaaaatggc
gccaagtgcacagacggacccaatagatacacctgcgagtgcactgaaggttactctggg
agacactgtgagacggacatcaacgagtgttactccgacccgtgccactacggcacctgc
atcgacggcctggcctccttcagctgccagtgcagccccggctacaccgggcggctgtgc
gagaccaacatcaacgagtgcctgagccagccgtgcaggaacggaggcacctgccaggac
cgagagaacgcctacatgtgcagctgccccaagggcaccaccggaatcaactgcgagatc
aacatcgacgactgcaagagcaacccctgtgactacggggcctgcatcgacaagatcaac
ggctacgagtgcgcctgcgagcccggctacacgggcaccatgtgtaacattaacatcgac
gagtgtgccatcaacccctgccacaacggcggcacctgcatcgacggcatcaacggcttc
acctgcgcgtgtccagacggctaccaggaccccacctgcttctcccaggtcaacgagtgc
ctcagcaacccctgcatccacggccactgtgaggacaagatcaacggctacaactgcctg
tgtgattctggctggagcggaaaaaactgcgacatcaacaacaacgagtgtgaatccaac
ccgtgtatgaatggaggcacctgcaaggacatgaccagcggatacgtttgcacctgtcgc
atgggcttcaccggaccaaactgccaaaccaacatcaacgagtgtgcctccaacccctgc
ctcaaccaggggacgtgcatcgacgacgtcgccggctacaagtgcaactgcgtcctgcct
tacacgggagacaactgtgagaccttgatggctccctgcagctccagaccctgcaagtat
ggaggagtgtgccaggagtcggaggactaccagagcttctcctgcgtctgtccggaagga
tggcaaggccaaacatgcgaggtggacatcaaagagtgtgtgaagaatccctgtcgcaac
ggcgcgacctgccagaacacgctgggcagctaccactgcgcctgcaaaccaggcttcacc
gggcgcaactgcgaaagcaacatcgacgactgcaagcccaacccttgcagcaacgggggc
ttctgcaaggacgaggtggacggcttcctgtgcacctgcctcgccggctttcggggcacc
aagtgcgaggaggacatcaacgagtgcgagagcaacccgtgcaaaaacggagccaactgc
accgactgcgtcaacagctacacctgcacctgcccgcccgggttcagcggaatccactgt
gaaaacaacacccccgactgcaccgagagctcctgcttcaatggcggctcctgtatggac
ggcatcaacaccttcacgtgtctgtgcccgccgggcttcacgggtagctactgccagcac
gacatcaacgagtgtgactccaagccctgcctgaacggtggcacgtgccacgacagctac
ggcacctacaagtgcacctgcccgcacggatacaccggcctcaactgtcagaacctggtc
cgctggtgcgactcgtcgccctgtaagaaccggggcacttgctggcagaggggaaccacc
tacagctgcgagtgcgagatcggctggacgggactctactgcgacgtcccgagcgtctcc
tgcgaggtggcagccaagcagagaggtgtcgacgtcgcccacctgtgtcgtaactcgggt
cagtgtctggatgcggggaacgtccactactgccactgccaggtgggatacactgggagt
tactgtgaggagcaggtggacgaatgcacccccaacccctgccagaacggagccacctgt
accgacttcttaggcggatacacctgcaagtgcatgccaggatacgtggggaccaactgc
tccgacgagatcaatgagtgtttctcccaaccgtgccagaacgggggcacctgcattgac
ctgatcaatacctacaaatgctcctgtccccggggaagccaaggtgtgcactgcgagatc
aacatcgacgactgcaacccgttcgccgacccggtcaccaaggagcccaagtgcttcaac
aaagggaagtgcgtggaccgcgtgggcggctaccactgcatctgctcggcgggctacgtg
ggcgagcgctgcgagggcgacatcaacgagtgtctgtccaacccgtgtgacccgcggggc
acgcacagctgcatccagctcaccaacaactaccgctgcgactgtcgcaccggatacacg
ggtcagcgctgtgacacggtgtttgatggatgcaaggggaaaccgtgtcgcaatggaggg
tcctgcgctgtggccagtaacacgccacatggcttcatctgcaaatgtccccctggcttc
accggctccacgtgtgaatatgacgcccaggcctgcggcagcctcaactgccgcaacggg
ggcacctgcatctctggccacaagagtcccaagtgtctgtgcaccccgtcgttcaccggg
cccgagtgccagtatcccaccgacagcccctgtaattcaaacccctgctacaacggcggc
atgtgcgaatacacgtcagaggcgccgttctaccactgcgtctgccccaccaacttcaac
ggcctccgctgccacatcctggactacagcttccagggcggcttcggccacgacatcgcg
ccgccgcccgaggtggaggcgccctgcgacatcccgctgtgcgaggaggcgaagcacaac
aagtactgcgacgtgctctgcaacaaccacgcgtgcggctgggacaacggcgactgctcg
ctcaacttcgacggcccgtggaagaactgctcggccgcactgcagtgctggcgctacttc
aacgacggcaagtgcgactcgcagtgcgacaacgccggatgcctttacgacggcttcgac
tgccagaatctggaggggcagtgcaaccctctgtatgaccaatactgcaaggaccactac
gccgaccgccactgcgaccagggctgcaacaacgcagagtgccggtgggacggcctggac
tgcgccaacaacatgcccgagaagctcgccgtgggccagctggtgctggtggtccacatc
cccccgcagcagctcctcaacaactccttcggcttcctgcgcgagctgagccgcgtcctg
cgcaccaacgtggtgttcacggtggacgccaacggcgagacgatggtgtacccgtactac
ggcaacgagcacgagctgaagaagtacaacgtgaagcgctcgctggactcgtgggccgag
gtccccggcaaggttctgagcgtagtgaagaggagcgtgcgcggcgtggcaggcggcggc
gggagagcgaagagggaactggatcacctgcagatcaaaggctcggtcgtccacttggag
gtggacaaccgccagtgcttccagcagtccaccgagtgtttccagagcaccgacgacgcc
gcagctttcctcggggcgttggcctccagtggcaaactggatgttccctacaccattgaa
gccgtttttagcggagtggaccccaagccttcacaggacctctaccccatctacttggtc
ctgggcggcatcgggatgctggccttcatcgccgtgggaatggtggcggcccgaaagcga
cacaacgaacacgggcgcctgtggctccccgagggcttcaagaccacggagaccagcaag
aagaagagacgcgagcccgtcggggaggattcggtgggattaaagccactgaaaaacacc
tcggacatttcactcatggatgacaaccagaatgagtggggcgaagacgagccctcggac
gctaaacgctccaggtttgacgaacaggcgatcctggaggtggacgaccagacggaccac
cgccagtggacgcagcagcacctggacgccgccgacctgcgcatcccctccatcgctccc
acgccgcctcagggcgagattgagaacgactgcatggacgtcaacgtccggggaccagac
ggattcacgccgctgatgatcgcgtcctgcagcgggggcggtttagagacgggcaacagc
gaggaagaggaggacgcctccgccaatgtgatcaacgacttcatctaccagggcgccgac
ctccacaaccagacggaccgcacgggcgaaacggccctccacctggccgcccgctacgcc
cgatcggacgccgccaagcgcctgctggaggccagcgccgacgccaacgtgcaagacaac
atgggcaggacgccgctgcacgccgcggtggctgctgacgcccagggggtgttccagatt
ctgataaggaaccgcgccacagatctggacgcccgcatgcatgacggcaccacccccctg
atcctggctgccaggctggcggtggagggcatggtggaggagctcatcaactgccacgcc
gacgtcaacgcaatcgacgatttcggtaaatcagctctgcactgggccgcggctgtgaat
aacgtggaggctgtgaatgtgcttctcaagaacagtgccaacaaggacatgcagaacaac
aaggaggaaactcctctgttcttggctgccagggaaggaagctacgagaccgccaaggtc
ttactggaccactttgccaacagggaaataaccgaccacatggaccggctccccagagac
attgcacaggagcggatgcaccacgacatcgtgcggctgatggacgactacaacctggtg
cggagtccccacatgcacggcggctcgctcggcaccaccttgtcgccgccgctgtgctcg
cccaacggctacctgggcggcatgaagcagcccatgcctcacggccacggcaagaaggcg
cgcaagcccagcgccaaggagggcaaagacatgaaggtgaagaagaagaacctgcaggac
gggaagcccggcagcctcctggacggctccggcgtgctgtcgccggtcgactcgttggag
tctccgcacggctacgtctccgacgtggcctcgccgcccatgatgacctcgccgttccag
cagtcgccgtccgtctccctgaaccacctgcagggcatgtccgatgcgcacctgtccgtc
aaccacctggtgatgccgaacaagcaggagctggctcggatgcagtttgacccgctgccg
ccgcgtctctcccaccagggcgccatcaacggccagtgcgattggctgtccaggatgcac
ggcggcatgagccagccgggccagttcaaccccatgcggggagctcccggcggccaggga
ggcctgcacccgggggggcagcacgggatgatggcgtccctccacaacggccaccccgcc
ggcctctcgcagatgatgacctaccaggggatccagagcggcaggctgggtccgcagccg
cacatcatgcagcagcagatgcagcagctgcagaaactgcagcagctgcagcagcagcag
cagagcatccagctgcagcaccagaactccaacaccaccaacagccagagcttcatcagc
ggggagctcagttccccggagctccagcagggcaccggcaactccagcatgcccatccac
accatcctgccgcaggagacacagattatgccttcctccatcaaccagtcgatgcccagc
acccagttcctcaccccgccctcccagcacagctattcaggccccatggacaacaccccg
aaccaccaggtgcaggtgcccgaccacccctttctgaccccgtcccccggctctcccgac
cagtggtcgagttcctcgcctcattccaacatgtccgactggtccgagggcatttcaagt
cccccgacgagcatgcaggctcagatcgcacatctacctgaacagttcaaataa
DBGET
integrated database retrieval system
