Pseudoliparis swirei (Mariana hadal snailfish): 130197704
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Entry
130197704 CDS
T09868
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130197704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130197704
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130197704
BRITE hierarchy
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
130197704
NCBI-ProteinID:
XP_056276505
LinkDB
All DBs
Position
8:22277009..22323545
Genome browser
AA seq
2515 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKGAQNKLEKFVTELQNANEELRTQHERFKADSEQQYFDIDKR
LAESQEQILSATRDVQTLKEDNRKLNEELSALKGIEGETPEDKPPQQQTKAKYEIEAEKR
ELARLLEKKTQEAENLTATVMGLNEKLAETSKVKTELQLQLDGIQSSVASVQHRETRMEQ
EKELHEKKMEWLTAELKTKTEELLTTTREKGTEILELQGVQKNSKEQVARLEGQLASLKQ
TGESQNRRAEDLNSKLKQAKDEQSAMEEKYRNELNANVKLCSLYKGAATDTEMKNQELSR
AVEELSKLVKDTGEANKTLEKKLSDGAELKTRLEAELQEKIVKMETELENSMLKASGKHC
CAPSLTEEELDSMCPSAAAIAAIVKPGMKFFELYNAYAECQKQLQLQRQESQCANRVLDE
IVLEVEAKAPVLRRQREEYESMQRSMASLCNKLEQARTEIYSLQREREEAKQRCDGMERD
KLRTERHMEDTSKQVCTLLVQLEEARGNQVTREDGSSASISSTSEVISPRQLSFRSVEEL
QRQNQSLLRRLRELEEEKERQQSQRTAACVSELEAGVAALQKEAEQLREQRNQQKQLADS
SARQRDMYKALLTQSTGFSLPPQAGSDSPSHPSPVKPPTVPPPRSTPQRAAAESAQNTQA
RAALKQLSDAFTLYKKEKAENDRMLNDANDRLQRQLTELRSSHARLTSQLEFSSKRYEML
QETVSAYRREISALQDRNQKMAATTQRHEHIIHTMSQDLRQANEKLALEEVRVENLTKER
DLLRRAESRLGREKEAVLSEQRNQNLLLVNLKSIQLTMERTETQTHQRLDDKIEHLEAEV
SSMKTRLDQEVAQRHALGRTMDAQLLEAKKQLETQNTLQQKTRELLHGAEQQVAALKAQL
AFASSSEATTTTTPASRAAALRAPLRVRSPVPAASQQLGQSEQELAEVNGLLRTAEEQKA
ELAEQLKNANASVEQYRAVVLTLEDSLKKEKESHCPLEVRLKESEEVQNQLDKRILEGEK
MRQQEREERRKAVEAVEKQVCELQRSLKLSQTEQQEALERSTAAVTLEQKAIQDSLLQTK
LAGEAQAKYERELMLHAADVEALQELKKRSQQDAARRRELEEQLSKTLGLLQERTAALNA
AERTLKEDLTNKTRRCAELGKQNTLLHQQMDDMATRGRQQQQQPDLSFSEEGKTTEQILE
ILRFVRRDKEIALAQCEASDGEASRYKQRVEHQDRELKELQEALNAEREKMQETAKTLAQ
QEEQLKKMEIISTLQESTRILKMDRDKLQQELQQAQAKVAKLQSDISPLHHSLSMLSEKN
GSMQADKRILEEDLKRWKARAQQLVSQQKDGDVEERQKLSSEREAQQRRITQLAEETGRL
KAELARTSVSSNSAQSQLQGFRDSVARLSSERDTLKKDMETKNKDILEKNKTITQVKKIG
RRYKTQYDELKAQHDKLVQDTAAKAGSEAAPSQEVQQDVTKAQEELKKTVEELGALKEEA
RKKLEEAQKTQQELEEAKKETQQSKDKIQEVQNQLTQKQNQLTQVQSQLSQIQTQLQQNQ
NQLTQSQKELQQAKTHSLQVHNQLKSAQSISQARLNQIQQAKDGLQQLQKTQQSSQQSHN
QEVGNLKTALSQSESKVTELQGHLEGQQKLLGEREAEVKRLQEQLTEAKRAGDATSANRS
QSSQSGDANAAGDVNPALHEELAQLRQELSDSKTTEEQLRKQIAEKEEKTKKVFMGAKTK
INQLNGAKERLSQEVAEAKQSREEQEGRMNALKSQYEGRLLRLDRELRELRESHAHPEPR
EEPQDQGGAKGGDQTRCADQRQVSLKSPSQDRASSSMSDPPTANIRPTTSTPSPSGKPSP
SPGSKATPRASIRPMVTEATVPVPTPTATVMPTTQSDSQEAPMSSGTSVHSTCSGLVTVS
MNQPTSSQVTAFVQPTQQQAANQDAAMEAERPSTSSSLSGTVGSKRMREEVDLEEKSSRP
ESSQVPPTTKKLRLKPTISLQMEGDEDVERELREEPQDSPDDSQWFKILRNGFGLQELPE
DCFPALAEEDEDVEEGGVSQSVPSELMSSQDSASGAVVLDVIVIDTDSESHESKEGEEQP
EDDDGEEDEEEEEEEDDDDDDDDGYKEEVEDGDEDEDDAGDCAMMEGDEERQRAEEEGRA
REPSNPEETACGASSDASHSGEVCSGPTSESDAPRDHVHFSPTPSAPSHSSPSSSSSLTP
RLPHPRRPPHPLPPRLYIQPPAPELGPPHTQRQSSQLRRPSVGRGPQLTPGIGSMQHFFD
DDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFGPPEDLMPQTSASHSDLGQLA
SQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSDSGDNMASQSVPMV
TTSTGMASAADDGDEVFMEHEGDGPGVESSLESHADTESTGQQSDDSSLASTSQDPDGGG
ATQRRGAPGLTSIPPTRGTSRGGRGGRGEARTLLSRRGTSFRGGRGGAMGRGGFA
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcctgcttcaagtcctggagcggacagagttgaataaactcccgaaaggc
gcccagaacaagctcgagaagtttgtaacggagctgcaaaatgctaacgaggagctccgg
acgcagcacgagcggttcaaagcggacagcgagcagcagtactttgacattgacaagagg
ctggcggagagtcaggaacagatcctgtctgccaccagggacgtgcagacgctcaaggag
gacaataggaagctcaacgaagagctgagcgccctgaagggaatcgagggagagacccct
gaagacaaaccaccacagcagcaaaccaaggccaagtatgagatcgaggcagagaagaga
gagctggcgaggctcctggagaagaaaacgcaggaggcggaaaacctcactgcgactgtg
atgggtctgaatgagaagctggccgagaccagcaaagtgaagacggagctgcagctccaa
ctggacggcatccagtcctctgtggcttctgtgcagcaccgggagacgcgcatggagcag
gagaaggagctgcacgagaagaagatggagtggctgaccgcggaactgaagaccaaaact
gaagagctgttgaccaccaccagggagaaagggaccgagatcctggagctgcagggggtc
cagaagaacagcaaggagcaggtggccaggctggaaggacagctggcgtctctgaagcaa
accggcgagagccagaaccggagagccgaggacctgaacagcaaactgaagcaggctaaa
gacgagcagagcgccatggaggagaaataccgcaacgagctgaacgccaacgtcaagctg
tgttccctctacaagggggcagcaaccgacacggagatgaagaatcaagagctgagcaga
gccgtggaggagcttagcaagctggttaaagacaccggggaagccaataagactctggaa
aagaagctgtcggacggggcggagctaaagacgcggctggaggcggagcttcaagagaag
atcgtgaaaatggagacggagctggaaaacagcatgttgaaagcttccggcaaacactgc
tgtgcgccctctctgaccgaggaggagctggactccatgtgtccgtcggcggcggccatc
gctgccatcgtcaagcccggcatgaagttctttgaactgtacaacgcctacgccgagtgc
cagaagcagctgcagctgcagcggcaggagagccagtgcgcgaaccgcgtcctggacgag
atcgtcctggaggtggaggccaaggccccggtgctccggcgccagagggaggagtacgag
agcatgcagaggtccatggcctcgctgtgcaacaagctggagcaggcccgcacggagatc
tacagcctgcagagagagagagaggaggccaagcagcgctgtgacggcatggagagagac
aagctgaggacagagagacacatggaggacacgtccaaacaggtgtgcaccctcctggtg
cagctggaggaagccagaggcaaccaggtgaccagggaggacggcagctccgccagcatc
tccagcacctctgaggtcatcagtccgcgccagctgtctttccgcagcgtggaggagctg
cagaggcagaaccagagcctgctgaggcggctgagggagctggaggaggagaaggagcgg
cagcagagccagaggacggcggcgtgcgtgtcggagctggaggccggcgtggccgcgctg
cagaaggaggcggagcagctgcgggagcagaggaaccagcagaagcagctggccgactcc
agcgcccggcagagggacatgtacaaggccctgctgacgcagagcaccggcttcagcctg
ccgcctcaggcaggttctgactctccctcccacccttcacccgttaaaccgccgacggtg
ccgcccccccgctccaccccccagagagccgccgccgagtcggcacagaacactcaggcc
agggcggcgctgaaacagctgagcgacgccttcacgctctacaagaaggagaaggcggag
aacgaccgcatgctgaacgacgccaacgaccggctgcagaggcagctgacggagctgcgc
tccagccacgccaggctcacctcgcagctggagttcagcagcaagaggtacgagatgctc
caggagacggtgtcggcctaccgcagggagatctccgccctgcaggaccgcaaccagaag
atggccgccaccacccaacggcacgagcacatcatccacacgatgagccaggacctgaga
caggccaatgagaagctggcgctggaggaggtgcgcgtggagaacttgaccaaagagaga
gacctgttgagacgagcagagagtcgactcgggcgagagaaggaggccgtgctgtccgag
cagcggaaccagaacctgctgctcgtcaacctcaagtccatccagctgacgatggagcgg
acggagactcagactcaccagcggctggacgacaagatcgagcacctggaggcggaagtg
tcttcgatgaagaccaggctggaccaggaagtggcacagagacacgccctcgggcgcacc
atggacgcccagctgctggaagccaagaaacagctggagacccagaacaccttgcagcag
aagaccagggagctgctgcacggtgctgagcagcaggtggcggcgctgaaggctcagctg
gctttcgcttcatcctccgaggccaccaccaccaccaccccggcttccagagccgcggcc
ctccgagcaccactccgagtgcgctctccggtgccggcggcttcccagcagctcggccaa
tcggagcaggagctggcggaggtgaatggcctcctgcgtaccgccgaggagcagaaggcg
gaactggcggagcagctgaagaacgccaacgcctccgtggagcagtaccgggccgtggtg
ctgacgctggaggacagtctgaagaaggagaaggagtcccactgccctctggaggtccgg
ctgaaggagtccgaggaggtgcagaatcagctggacaagaggattctggagggggagaaa
atgaggcagcaggagagagaggagaggaggaaggccgtggaggccgtagaaaaacaggtg
tgtgagctgcagcgcagtctgaagctgagccagacggagcagcaggaagcgctggagaga
tcaacagctgctgtcaccctggagcagaaggccatacaggacagcctgttgcagacgaag
ctggctggagaggctcaggccaagtacgagcgtgagctcatgcttcacgccgcggacgtg
gaggcgctgcaggagctgaagaagagatcccagcaggacgcggcgcggaggagggagctg
gaggagcagctgagcaagaccttgggcctcctgcaggagagaaccgcggccctgaacgcg
gcggagaggacgctgaaggaggatctgaccaataagacgcgccgctgtgcggagctgggc
aagcagaacactctgctgcaccagcagatggatgacatggccaccagggggcgccagcag
cagcagcagccggacctgtccttcagtgaggaggggaagaccaccgagcagatactggag
atcctcaggtttgtgcggcgcgataaggagatcgccctggctcagtgcgaggcgtcggac
ggagaggcgtctcgctacaaacagcgagtggagcatcaagaccgagagctgaaggagctt
caggaagccctgaacgccgagagggagaagatgcaggagacagccaagactctggcccag
caggaggagcagctcaagaagatggagatcatcagcactctgcaggagagcacccggatc
ctgaagatggaccgagataaactgcaacaggagctccagcaagcccaggctaaggtcgcc
aagctgcagtcggacatcagcccactgcatcactccctgtccatgctgtcggagaagaac
ggctccatgcaggcggacaagaggatactggaggaggacctgaagcgctggaaggccaga
gcacagcaactggtcagccagcagaaagatggcgatgtggaggagcgacagaaactctcc
agcgagagagaagctcagcagagacgcatcacacaactcgctgaggagacgggccggctg
aaggcggagctggccagaaccagcgtcagcagcaactcggctcagtcccagctgcagggc
ttcagagactcggtggcccgtctgagctcggagagagacactctgaagaaggacatggag
accaaaaacaaggacattctggagaagaacaagaccatcacccaggtcaagaagatcgga
cggcgctacaagactcagtacgacgagctcaaagcccagcacgacaagctggttcaggac
acggccgctaaagcaggaagcgaggcggcaccgagccaggaggtgcagcaggacgtgact
aaagcccaggaggagctcaagaagaccgtagaggagctcggcgctctgaaggaggaggcg
cgcaaaaagctggaggaggcccagaagacgcagcaggagctggaggaggccaagaaggaa
acccagcagagcaaggacaagatccaggaggtccagaaccagctgacgcagaaacagaac
cagctgacgcaggtccagtcccagttgtcccagatccagactcaactgcaacagaaccag
aaccagctgacacaaagtcagaaggagcttcagcaagccaagactcacagcctgcaggta
cacaaccagctgaagtcggcccagtctatatcccaggcccgtctcaaccagatccagcag
gctaaagacggcctccagcagctccagaagacccagcagagcagtcagcagagccacaac
caggaagtgggcaacctcaagacggctctgagccaatcagagagcaaggtgacggagctt
cagggacacctggagggccagcagaagctgctgggcgaacgcgaggcggaggtcaagcgt
ctgcaggagcagctgacggaggccaagcgggccggcgacgccacgtcggccaatcggagc
cagagctcccagtcaggggacgccaacgctgccggagacgtcaatccagcgctccacgag
gagctggcacaactcagacaagagctgtcggacagcaagaccaccgaggagcagctccgg
aagcagatcgccgagaaagaggagaagacgaagaaggtcttcatgggagccaagactaag
atcaaccagctgaacggtgccaaggagcgtctgagtcaggaggtggcggaggccaagcag
agcagagaggagcaggagggccggatgaacgccctcaagtctcagtacgaggggcggctg
ctccgcctggaccgggagctgagggagctgagggagagccacgcccacccggagccccgg
gaggagccgcaagaccagggcggggccaaggggggcgatcagaccaggtgtgcagaccag
aggcaggtctctctgaagagtccctcccaggacagagccagctccagcatgtctgacccg
cccacggccaacatccgccccaccacgagcacgccgtcgcccagcggcaagcccagcccc
tcccccgggagcaaggccacgccccgggccagcatccggccaatggttaccgaggcaacc
gtccccgtcccgacacccaccgccaccgtgatgccgaccacgcagagtgacagccaagag
gcgccgatgagttcagggacctccgtccactccacctgctccgggctggtgaccgtgtca
atgaatcagccaaccagctcccaggtcacggcctttgtccagcccactcagcagcaggcg
gccaatcaggacgcggccatggaagcggagcggccgtccacgtcgtcgtccctgagcgga
acagttggttcaaagcgcatgagagaggaagtggacttggaggagaagagttccagacca
gagagttctcaagtgccaccgaccaccaaaaagctacgactgaaaccaacgatatcgctg
cagatggagggcgatgaggatgttgagcgggagctgagggaggaaccacaggactcgccg
gacgacagtcagtggtttaagattctcagaaacgggtttgggctgcaggaacttcccgag
gattgtttccccgcgctcgccgaagaggacgaggatgtggaggaagggggcgtgtcccag
tccgtcccctctgagctgatgtcctctcaggactccgcctccggcgccgtcgttctggac
gtcatcgtgatcgacacggacagcgagagccacgagagcaaagagggggaggagcagcca
gaggatgacgatggagaggaagatgaggaggaggaggaagaagaagacgatgatgatgac
gatgacgacgggtacaaggaggaggtggaggatggcgatgaagacgaggatgatgctggc
gactgcgcgatgatggaaggagatgaggagagacagagggccgaagaagagggaagggcg
cgtgagccgtccaaccccgaggagaccgcgtgcggagcgtcctccgacgcgtcgcacagc
ggcgaggtctgcagcggccccacgtccgagtccgacgcccccagagaccacgtgcacttc
tccccgaccccctctgcaccctcccactcctccccctcctcctcctcctccctcacgccc
cgcctcccccacccgcgtaggcccccgcatcccctcccaccgcggctctacatccaaccg
ccggctccggagttgggacccccgcacactcagagacaatcctctcagctgcgcagaccg
tcggtgggacgcggccctcagctgacccctggaatcggcagcatgcaacatttctttgat
gatgacgacaggatggttcccagtactcccactctggtggtccctcaccgcaccgatggc
tttgctgaggctatacattctcctcaggtggccggtctgtccaccaggttcaggtttgga
ccgccagaggacctgatgcctcagacatcagcctcacactctgacctgggccagctggcc
tctcaaggaggtctggggatgtacgagtcgcctctgttcctggccgctcacgatgaagac
ggaggaggacggagtgtccctaccacaccgttacaggtggcggcaccagtgacggtgttc
acggagtccctgccctcggacagtggcgacaacatggcgtcccagtctgttcccatggta
accacctccaccgggatggcttctgctgcggatgatggagatgaagtcttcatggagcac
gagggagacggtcctggtgttgaatcctctttggagagccacgcagacacggagtcgacg
gggcagcagagtgacgactcatcactggcgtccaccagccaggaccccgacggcggcggc
gccactcagcggcgcggcgcgcccggtctgacgagcatcccgcccaccagaggaacctcc
agggggggcagaggggggcggggcgaggcccgcacgctgctcagccgcagaggcacttcc
tttcggggaggaaggggaggagccatgggcagagggggcttcgcctga
DBGET
integrated database retrieval system
