Pseudoliparis swirei (Mariana hadal snailfish): 130209577
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Entry
130209577 CDS
T09868
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130209577 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130209577 (clp1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
130209577 (clp1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130209577 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
CbiA
AAA_18
Motif
Other DBs
NCBI-GeneID:
130209577
NCBI-ProteinID:
XP_056295301
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All DBs
Position
19:15834487..15838371
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AA seq
441 aa
AA seq
DB search
MATEGVETTSEDVPVLGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMGEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEGNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGLTFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTHVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggagggtgtggaaacgaccagtgaagatgttccagttcttgggaaggtcagc
accaggtttgacctggagaaggagactgaacttcggtttgaggtggaggcaggggaggca
gcagagcaagttgagctggagctcctgacaggaatgggtgaggtgtttggctcagagctg
aaccgcaacaagaagtacacattcggaccaggctccaagattgcagttttcacctggcaa
ggctgcagcgtgaatctttatggaaaaccagaggtagcttatgtgtccaaggatactccc
atgctgctctacctgaacacacatgctgccctggaacagatgagaaaacaagcagagagg
gacaatgagagggggccgagggtgatggtcgtgggacctacagatgtaggaaagtcaaca
gtgtgccgcctgctattaagctatgctgtaagggtgggccggaggccaacactggtggaa
ctggatgttggtcagagtggggtgtctgtacctggtacagtgtcggcactctgcattgag
cgcccagcagacgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tcaactacccctgggaccaatatcaaactttacaataagctgacatcatgcttagcagag
gtgttttcccagcgctgtgaggggaacagaaaggctagcgtgggcggctgtatcatcaac
acctgcggttgggtgaagggctctggctaccaggctctagtccactgtgcctctgccttt
gaggtggatgtggtgctggtgctggaccatgagagactctacaatgaactcaaacgagac
ctccctcactttgtccgggttgtgctcctacccaagtccggaggggtggtggagcgctca
aaggagtgcaggagggatactcgggatgagaagatccgcgagtatttctacggcttccgt
ggactgaccttctaccctttctcctatgaagtgcgtttctcagacgtccgcatctataag
atcggagcaccatccatcccggactcctgcttgcccctgggaatgtctcaggatgacaca
cagctaaagcttgtgcctgtaacaccagggagagacctcacgtatcatgtcttaagcgtg
agcagtgcagaggatggagaggaaggtgccagaaaggggatagtcgagagccctgtgtgt
ggctttatagtggtgactcatgtggacacacaaacacaagtgatgaaagtgctgtcccca
gcacccagaccactgcccagacacactctacttatcatggacatccgcttcatggacatg
aaatga
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