Pseudoliparis swirei (Mariana hadal snailfish): 130209966
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Entry
130209966 CDS
T09868
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130209966 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130209966 (polr1a)
Enzymes [BR:
pswi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130209966 (polr1a)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130209966 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box
HMG_box_2
DUF4604
Motif
Other DBs
NCBI-GeneID:
130209966
NCBI-ProteinID:
XP_056295891
LinkDB
All DBs
Position
19:complement(6552258..6585838)
Genome browser
AA seq
1712 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSTEEIRKLSVKAITNFRFLDSVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNNCPGHLGHVELPLPVYNPLFFDKLYMFIRGSCLSCHMLTCPRAAIHLL
LNQLRLVDHGAMQEVYQIEQVLFQHLEANPKATGDEIGQVLKQFTDTVLGVNAEGSKNTR
PIKLLVEKKNSLIGDFWRIQMKSRKCPHCRSGKFQLRREHNSKLIITMPSVPIGVETLDD
DLLAGKRVYMTASTAREHMMKLWEKEGFFLKCLFAGLEDETTSMEGEGRFSPDLFFLDLM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGVVSKLLALIAGEKAKQEEEPEEQQQQ
APEETDQSFLVGIPGITITDKLYNSWVRLQTHINIVFDSELDKMIVEKYPGIRQILEKKD
GLFRKHMMGKRVDYAARSVICPDMYIETNEIGVPMVFATKLTYPQPVTPWNVKELRQAVL
NGPNVHPGASMVINEDGRQTILSPDSLVQREAIAKQLLTPCPGPHKMPIKIVNRHIKNGD
ILLLNRQPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARA
EAYTLLSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRAQYIELVYRGLTDKPG
RIEMLPPAIFKPQPLWTGKQVVSTLLLNVIPKNAVPLNLAGKSKIPSKAWIQVPPRAAPG
YCPDSMCDSEVVIRQGELLVGVLDKAHYGCSAYGLVHCCYELYGGKTSGKLLSCLARLFT
AYLQLYRGFTLGVEDILVKAGANKRRKKIIQESLKIGTKALQAAFNLPATVGQAEARSRW
QDAHLNPDQKDFSMADQKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGST
VNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFF
HCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI
PKTPFLQQKQLSFIEDNYKVIKCSQGLDEVLARLDPQAANRHFASIQSWKAKREGACPRR
GAFLLFSQKKLAKLKKTAEPTNPDCYGRNDAESQLIEMWRSLDEPNRAKYSRKTSRCPGP
SLGLLKPDVCFGSVSETFHSITEEYLQNEAGRSRDAVDTHSLRQLLLYKWQRSLCDPGEA
VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSIPVLK
TKKALKRAKTLRKRLTRVCLAEVLQKVDVVETLRIEKNEKLRLFKVSFQFLPPERYSDDK
LLSPQKILHYMETRFFRLLLEAIKKRSAKLASLAMETRKASARDRDHDDDGPAEPAGLED
GEEEVAPEVVDDQANEGDADASDAKRKGKQEEEVDYESEEEDRVDDAEDKEDEDEEEEDE
AAAAATAAEEPTPEVSQLDVSQQLSTRGKGKGKATRRTKQPGSYSEETLDQMRTNSVLGS
NPAIEQYRYDQQHELWCEIDLVLPVCKVHFDLTSVLSALAHNAVIMETKGLTRCLLGETT
AKNGEKETVLNTEGINMQEMFNYGDILDINRLYSNEVHAMAKTYGIEVGLKVIEKEIKNV
FAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAIQSNPSPLQQMTFETSYKFLKQATMLG
LHDKLESPSACLVVGKIVKAGTGLFELKQPLQ
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgggaaagatgtgccatggcggcgactggagggcatgtcgtttggcatgtac
tctaccgaagagataaggaagctgagtgtgaaggcgatcaccaacttcaggttcctcgac
agcgttgggaacgtggccccgaacagcctgtacgacctggccctcgggccagcagacagc
aaagaggtgtgttcaacctgctgtcaggacttcaacaactgtccaggacacctgggacat
gtagagctacctctccctgtatacaacccgctgttctttgataaactctacatgtttatt
cgtggctcctgtctttcgtgtcacatgttaacatgtccccgagctgccatccacctgctc
ctcaaccaactgaggttagtggaccatggggccatgcaggaggtctaccaaatagagcaa
gttctcttccagcacctggaggcaaaccctaaagccactggagatgagatcgggcaggtg
ctgaagcagtttacagacaccgtacttggagtgaacgctgagggttccaaaaacaccaga
ccgatcaaactcctcgtggaaaagaagaacagtttgataggtgatttctggaggatccaa
atgaaatctaggaagtgccctcactgcaggagcggcaagttccaactgcgccgtgaacat
aacagtaagctgatcatcacaatgccatcagtaccaatcggcgtggagacccttgatgat
gatctgttggctggaaagagagtctacatgacggctagcactgctagagaacacatgatg
aaactgtgggaaaaagaaggtttcttcttgaagtgtctgttcgctgggttggaggatgag
acgacgtcaatggaaggagagggaaggttctctccggacctcttcttcctggaccttatg
gtggtcccaccctgcaggtatcgtccaatcaatcgactgggtgaccagatgtttacaaat
ggtcagacggtcaacatgcaggccgtcatgaaggactgtggagtcgttagtaaacttctg
gctctcatagcaggggagaaagcaaagcaggaggaggagccggaggagcagcagcagcag
gctcctgaagagacggaccaatcgtttctggttggcatccccgggataaccataacggat
aaactctacaactcctgggtgcgactacagacccacatcaacatagtcttcgacagcgaa
ttggacaaaatgattgtggagaaataccctggaatcagacagattttggagaagaaggac
ggattgttccggaaacacatgatgggaaaacgagtggactatgccgcgcgatctgtcatc
tgtccagacatgtacatcgagaccaacgagatcggcgtacctatggtgtttgccaccaag
ctgacctacccgcagcccgtcaccccgtggaacgtgaaggagctccgccaggccgtgctc
aacggacccaacgtccaccccggcgcgtccatggtgatcaacgaggacggcaggcaaacc
atcctctcgcccgacagcctcgtgcagagggaagccatcgccaagcaactgctgacgccc
tgtcccggtccacacaagatgcccatcaagatagtgaatcgccacataaagaacggagac
atcttgttgctcaacagacagccaactctgcacaggccctccatacaagcccactctgca
cgcatcttaccaggagagaaggtactgaggctccactacgccaactgcaaggcgtacaat
gctgactttgatggcgatgaaatgaacgcgcacttccctcaaagtgagctggccagagcg
gaggcctacacgttgctcagcacggaccagcagtacctcgtcccaaaggatggtaaacct
ttagcgggtctaatccaggaccacatggtgtctggtacgaggatgacgatacgaggctgt
ttcttcacccgggcccagtacattgagctggtgtacaggggtctcacggacaaaccgggc
cgaattgaaatgctgccgccggccatcttcaaaccccagccgctgtggacggggaagcag
gtggtgtccactctcctgctgaatgtcatcccaaagaatgcggtgcctctcaacctggcg
ggcaaatccaaaatccccagcaaagcatggatccaagtcccaccacgagctgctccaggg
tactgtcccgacagcatgtgtgactcagaggtggtgattcgtcagggcgagctgttggtg
ggggttctggacaaggcgcactacggctgctcggcctacggtctggtccactgctgctac
gagctgtacggagggaagaccagtggcaagctgctcagctgcctggctcgactcttcact
gcctacctgcagctgtacagaggcttcacgttgggtgtggaagatatcctggtgaaagcg
ggcgccaacaagcgaaggaaaaaaatcattcaagaatccctgaagattggcaccaaagcc
ctccaggccgcgttcaacctgcccgccaccgtgggtcaggccgaggcccggagccgttgg
caggacgctcacctcaacccggaccagaaagacttcagcatggccgaccagaagttcaaa
gaagtggccaaccaagtgaacaacgacatcaacaaggtgtgcatgcccgtcggactccac
acctctttcccagacaacaacctccaactgatggtccaatcaggagccaagggatctact
gtaaacaccatgcagatttcatgtctactaggtcagatcgagttggagggccgcaggcct
ccactgatgccttctgggaaatccttgccgtgcttccagccgtatgacccctcccccggt
gccgggggctttgtttctggaaggtttctcacgggcatcaaaccacaggagtttttcttc
cattgtatggctggcagagagggactggtcgacaccgccgtgaaaacatccagatcagga
tacctgcagagatgtgtcatcaagcatctggagggcctggtggtgcagtacgatctgacg
gtgagggacagcgatgggtccgtggtccagttcctgtacggcgaagacggactggatatc
cccaagacgccgttcctgcagcaaaagcagttgtctttcatcgaggacaactacaaggtc
atcaagtgttcccagggcctggacgaggtgttggcccgcctggaccctcaggctgccaac
cggcactttgcgtccatccagagctggaaagcaaagagagagggggcgtgtccgcgcaga
ggagcgtttttgctgttttctcaaaagaagttggccaagctgaagaagactgcagaacca
acgaatccagattgctacggcagaaatgatgcagagtcgcagctcatcgagatgtggcgc
tccctggacgagccgaaccgagcgaaatacagccgcaagacctcccgctgccccgggccc
tccctgggcctgttgaagcccgacgtctgcttcggctccgtgtcggagaccttccacagc
atcaccgaggagtaccttcagaacgaggccgggcggagccgagacgccgtggacacccac
agcctccggcagctgttgctctacaagtggcagcgttcgctgtgcgatccgggcgaggcg
gtgggcctgctcgcagcccagtccatcggcgagccgtccacccagatgaccctcaacacc
ttccacttcgccggcagaggagagatgaacgtgaccttgggaataccccgactcagagag
atcctgatggtggccagctccaacattaagacccccatgatgagcatcccagtgctaaag
accaagaaagccctaaagagggccaagacactccgaaagagactcaccagagtctgcctg
gctgaggtgctgcagaaggtggatgtggtagaaactttgcggattgaaaagaacgaaaag
cttcggttgttcaaagtcagctttcagttcctgcctccagagcgttacagtgacgataag
ctgctgtcaccccaaaagatcctccactacatggaaactaggtttttccgtctcctgctt
gaagccattaagaagcgcagtgctaagctggcgtccctcgccatggaaacgaggaaggcc
tccgccagagaccgggaccacgacgacgatggaccagccgaaccagcagggttggaggac
ggcgaggaagaagtggcgccagaggtcgttgatgaccaggcgaacgaaggagacgccgac
gcttcggacgccaagcgcaaaggcaaacaggaggaggaggtagactatgagagcgaggag
gaggacagagttgacgatgccgaggataaagaagatgaagatgaggaggaggaggatgaa
gctgctgcggccgcgaccgcggctgaggagccaacgccagaggtgtcccagctggatgtt
tcacagcagttgtccacgaggggaaaaggaaagggaaaggcgacgagaaggacgaagcaa
ccgggaagttactccgaggagacgttggatcagatgaggaccaactccgtcctggggtcc
aacccggcaatagagcaataccgctatgatcagcagcatgagctttggtgtgagattgac
ctggtcctaccggtgtgcaaagtgcactttgacctcacttcggtgctgtcggcgctggct
cacaacgccgtcatcatggagaccaagggcttgacgcgctgcctgctgggagaaaccacg
gcgaagaacggagagaaggagacggttctcaacacggaaggcatcaacatgcaggaaatg
ttcaactacggtgatatcttggacatcaacagactgtactccaacgaggtccacgccatg
gcaaagacgtatgggattgaagtgggcctgaaggtcatagagaaggagataaaaaatgtg
tttgccgtctatggtatcgaggtggaccccagacatctgtcactggtagcagactacatg
tgttttgaaggcgtctataagccgttgaaccggcacgccatccagtccaacccctcccct
ctgcagcagatgaccttcgagaccagctacaagttcctcaaacaggcaaccatgctgggg
ttacatgataagctggagtccccttcagcttgcctcgtggtgggaaagatagtcaaagct
ggaacgggactgtttgagctgaagcagcctctgcagtag
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integrated database retrieval system
