Pseudoliparis swirei (Mariana hadal snailfish): 130213389
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Entry
130213389 CDS
T09868
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130213389 (cdkal1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
130213389 (cdkal1)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
130213389 (cdkal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
130213389
NCBI-ProteinID:
XP_056300957
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Position
22:16343762..16573840
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AA seq
565 aa
AA seq
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MPSDCDSLIDDIEDMVSSSDPTPHERQSARKSIMPRSRKKKELLSNEELQTDSLIPGTQT
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDNPSDADLWVLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKKVVDFLKERVPGVTIATDLICG
FPGETETDFQETVDLVKLYRFPSLFINQFYPRPGTPAAKMEQVPAQMKKQRTKELSQLFH
SYNPYDHKVGERQHVLVTEESFDAQYFVSHNKFYEQVLVPKRAEFKGKMIEVDIYEAGKH
FLKGRPVEESKPFTPSIAKPLQKGEVSGLIKEQIAHGIQGPASSTPSSSALWIGSYSLDR
ELLKTLGVGLTLAAAILAFIIEKLY
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgactgtgactctctgattgacgacattgaggacatggtgtcctctagtgac
cccacgccgcacgagagacagtcagctagaaagagcatcatgccaaggtccaggaagaaa
aaagagcttctgagcaacgaggagctccaaactgacagtttgatccctggcacccaaaca
atctggatgaaaacgtggggctgcagtcacaacaactctgatggagagtacatggccggg
cagctagctgccagcggatacaagatgactgataacccatcagacgctgacctctgggtg
ctcaacagctgcactgtgaaaaaccccgcagaagaccacttcagaaactcaatcaaaaaa
gcccaggaacagcagaaaaaagtggtactagcaggttgtgtaccccaggctcagccacgg
atggactacctcaaaggactcagcatcattggggtgcaacagattgatcgagtggtggaa
gtagtggacgaggctattaaaggccactcggttcgtcttttgggtcagaagaaagatgga
ggccggaggctcgggggagccagactggacctgcccaagatcaggaagaatcctctcatt
gaaatcatctccattaacactgggtgtctgaatgcatgtacctactgcaagacgaagcat
gccagaggagacctcgccagctatcccatcgaggagctagtggaaagagccaggcagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcgtatggcaga
gacatcgggacagacctgcccactttgctgtggaggttggtggaggagattcctgaagga
gccatgctgaggctgggtatgaccaaccctccatatatcctggaacacctggaggagatg
gctaagatattgaatcatccacgcgtctatgccttccttcatgttcccgtccaatcggcc
tcggacagcgtcctgatggacatgaagagagagtattgcatcgatgacttcaaaaaagtg
gtagatttcctcaaagagagggtcccaggtgtaaccatcgcaacagatttaatctgcggt
tttcctggtgagacggagacggacttccaagagacggtagacttggtgaagctctatcga
ttccccagtctcttcatcaaccagttctaccccagacccggtacacctgctgctaagatg
gagcaagtaccagcacaaatgaagaagcagaggactaaagagctgtcacaactgttccac
tcgtacaacccctacgaccacaaggtcggggagaggcaacatgtgttggtgaccgaggag
tcatttgatgctcaatactttgtgtctcacaacaagttctacgaacaggtgctggtgcct
aagagggctgaattcaaagggaagatgattgaggtggacatctacgaggcaggaaaacac
ttcctgaaaggccgaccagtagaagaaagtaagcccttcactccctccattgccaaacca
cttcagaagggagaggtgtctggcctgataaaggaacagattgcccacggcatccaaggt
cctgcttcatcgacgccttcctcctctgctctgtggatcggctcgtacagtctggaccgg
gagctactgaagacgctgggagtcgggctcactctggcagcagccatcttggccttcatc
atagagaaactttactga
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