Puntigrus tetrazona (Sumatra barb): 122357888
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Entry
122357888 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122357888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122357888
Enzymes [BR:
ptet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122357888
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122357888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
122357888
NCBI-ProteinID:
XP_043113468
LinkDB
All DBs
Position
14:4359333..4383104
Genome browser
AA seq
1705 aa
AA seq
DB search
MLFSKETPWRRLEGIVFGLFSADEIRKLSVKTITNSQLLDNVGNAAPNGLYDLALGPADN
KEICSTCMQDYTSCPGHFGHIDLPLPAYNPMFFXCKCHCAKLYLLMRGSCLACHTLKCPR
SAVHLLLGQLKLLDVGAMKEVYELESVLNQLVEGNAQLSGIEIQEAMNEFITPILKANED
KQHTSPIKHICEKKSSLINNFWRVHMRPKKCPNCRAGRMTVRREHNSKLIVIQGLFKAST
EKDDDSLITKRGFLTPSLAREHVINLWEKEGFFLKHLFSGFDMNNSEKGFSPEVFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNLQAVLKDNFMIQKLLALIAAEKTNSVEDTQTEVVQ
PSESADTGQIDQTFLSDIQGVNLTDKLYNMWIHLQSHVNIVFDSEMDKLSTEKFPGVRQL
LEKKDGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEL
RQAVLNGPSVHPGASMVINEDGSRTILSSSNLTQREAVAKQLLTPSTGQHRIPMKIVNRH
IKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQS
ELGRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTLRGCFFTRDQYTALVYRGL
TDKIGRVKLLPPALFKPVPLWTGKQVVSTLLLNVIPENSIPLNLMGKAKIPGKAWVKEPP
RVVPGYRPETMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCL
ARLFTAYLQLYRGFTLGVEDILVKNGANKQRRKIIQTSVTCGSKALRAAFNLPAAVGDTE
ARERWQDAHLNTDQRDFNVVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSG
AKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKP
PEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPQQFPFIKDNYEVIRKSKCLDEVLAKMDAGAALSHFKALKKWKAKHEH
VSLRDGAFLLYSQKKQSKLKSQVENKTLANGRDPSSLQLLENWRALDASGRKKYLKKTSH
CPDPCLALYRPDICFGSVSETFESIVESYLDQMCVKQEFPISSEIIDTDRLRHLLLLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKT
PMMSIPVLMTKKALKRVKTLRKKITRVCLSEVLHKVDVIETFRMPEKRIQKSRVFNITFH
FLPPERYQQDKLLTPDEILHFMEQRFFRLLPEAIKKLNAKMAAANVVXTCKVTANNSSQD
GDDIADKEDDGDEGTENHRIVDDEANEGDADASDSKRKEKQEEEVDYESEEGEAAIDDEV
EDVAEKEDEEDTQENTEENSGESQLADEAQSLNKSVQIKGASLDSNRISAVLQLSPTFED
YKYDTKHGLWCELTMVLPLTKVHFDLTSVVVKQAQNAVIMETKGITRCLLNEVTTKEGKK
EMVLNTEGINIHEMFKHADILELNRLYSNEVHAMANTYGIEVAIRVIEKEIKDVFAVYGI
EVDPRHLSLVADYMCFEGEFKPLNRFGIQSNSSPLQQMTFETSYKFLKQATMLGSYDKLR
SPSACLVVGKVVKGGTGLFDLKQPL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcaaaagaaacgccatggaggcgattagaaggaatagtgtttggcttgttc
tccgccgatgaaataaggaagctgagtgtgaaaactatcactaattcccagctgttggat
aatgtgggcaatgccgctccaaacgggctgtatgacctggcgctgggtccagctgataac
aaggagatctgctccacctgtatgcaggactacaccagctgtcctggccactttggtcac
atagatctgccccttcctgcctacaacccaatgtttttttgatgtaagtgtcattgtgcc
aaattatatctgctcatgcgaggttcatgccttgcatgccatacgttgaagtgtccgaga
tcggctgttcatttactgctgggccagctgaagctccttgatgtgggtgccatgaaggag
gtgtatgagcttgagagcgttctcaatcagttggtggagggcaatgctcagctgtctgga
atagaaatccaagaagctatgaatgagtttattacacccatcctaaaagccaatgaagac
aagcagcacacttctcctatcaaacatatctgtgagaaaaagtccagtctcattaacaat
ttctggagagtacacatgagaccaaagaagtgtccaaattgcagagctggtagaatgact
gtgcgcagggaacacaacagcaaactcattgtcatacaaggattattcaaagcaagcaca
gaaaaggatgatgattctctgattaccaaacgtggattcttgactccaagtttggcacga
gaacatgtcatcaacctctgggagaaggaaggtttcttcctgaagcatctgttttcagga
tttgacatgaataattcagagaaaggcttcagtcctgaagttttctttttggagttgctt
gtggttcctccatgcaggtacaggcctattaatcgtttgggagaccagatgttcaccaac
ggacagaccgtgaacctgcaggccgtgttaaaggataacttcatgattcagaaactactc
gcactcatcgctgctgagaaaaccaacagcgttgaagacacacagacagaggtggtgcag
cccagtgaatccgcagatactggtcagatagatcagaccttcttatcggacatccaagga
gtgaatctaacagacaagctctataacatgtggatccacctgcagagtcacgtcaacatt
gtgtttgacagcgaaatggacaaactgagtactgagaagttcccaggagtccgtcagctc
ttggagaagaaagatggcttgttcaggaagcatatgatgggaaagcgtgtggattatgct
gcgcgctctgtcatttgtcctgatatgtacatcggaaccaatgaaattggaataccaatg
gtctttgctaccaagttaacgtacccacagccagtgacaccctggaacgtgaaggaactc
aggcaggcggtgctgaatggacccagtgtccaccctggagcctccatggtcattaatgaa
gatgggtcccggaccatcctgagcagcagcaacctgacccagagagaagccgtggccaaa
cagctgctgacgcccagcaccggccagcacaggatacccatgaagattgtcaatcgccac
atcaagaatggggatgtgctgctattaaaccgtcagcccactctccacagaccatcgatt
caggcccactgtgctcgcattctgcctggagagaaagtgctccgattacattatgccaac
tgtaaggcctacaacgctgactttgatggtgacgagatgaacgctcacttccctcagagt
gagctaggcagggctgaggcctacacactagtgagcacagaccagcagtacttggtgcct
aaagatgggaagccattggccggcctgattcaggaccacatggtatctggcaccagcatg
actctccgtggctgtttttttacacgggatcagtacactgcactagtctacagaggccta
acagacaagatcggcagagtgaagctcttgcctcctgcgctctttaaacctgtgcctctc
tggacaggaaagcaggtggtgtcgacccttttgctgaatgtaattccagaaaatagcatc
cctttaaatttgatgggcaaagcaaagattccaggtaaagcctgggtgaaagaacctccc
agagttgttccaggatacaggccggaaactatgtgtgaatctcaggtggtcattcgtcag
ggagagctcttgatgggggttctggataaagctcactacggcagctcagcgtacggtttg
gtccactgctgctacgagctgtacggaggagagaccagcggcaaactgctcagctgtctg
gcacgactcttcactgcctacctgcagctttaccgtggtttcaccttgggtgtggaagac
attctagtaaaaaatggggccaacaaacagaggaggaaaattatccaaacgtcagtcacg
tgtggctccaaggcactccgagctgcgtttaacctccctgcagctgtgggagacactgaa
gccagagaacgctggcaagatgctcatctgaacacagaccagagagatttcaacgtggtg
gacctgaagtttaaagaggaggtcaatcaagtgaacaacaacatcaacaaggtgtgcatg
ccgctaggtctccaccgctccttcccagaaaacaacctacagctgatggtgcagtcggga
gccaagggttcaactgtcaatactatgcagatctcctgtttattgggtcagattgagctg
gagggccgccgaccgcctctgatgccttctgggaagtcccttccctgctttcagccctat
gaacctcagccgcgatccggaggattcgtaaccggcagattcttgacgggaatcaagcct
cctgagttcttttttcattgtatggctggtcgcgaaggtcttgtggacactgctgtcaaa
accagtcgatctggttatttgcagaggtgtgtgatcaagcatctagaaggtctggtggtc
cagtatgatttgactgtccgagacagtgatggaagtgtggtccaatttctttatggagag
gatgggctagacatccccaagacccagttcctgcagccgcagcagttccccttcatcaaa
gacaactacgaggttatcagaaagtcaaagtgtctggatgaagttctggctaaaatggat
gcaggggcagcacttagtcactttaaggctctcaagaaatggaaagccaaacatgagcat
gtttcactcagggatggtgccttcctgctctactcacagaagaaacagagcaagctgaag
tctcaagtagaaaacaagacactggccaatgggagagatccctcttctctacagcttttg
gagaactggagagctctggacgcctctggccgaaagaagtatttaaagaagacgtctcat
tgtccagacccgtgtctggctctttaccggccagacatctgcttcggttcagtgtctgag
acgtttgaatccattgttgagtcctacctggatcagatgtgcgtcaagcaggaatttccg
atctcctctgaaatcattgacacagatagattgaggcatctcctactgctgaagtggcag
cgctctctgtgtgaccccggggaggccgtgggtctcctagcagctcagagcattggcgaa
ccatccacacaaatgaccctcaacaccttccactttgctggcagaggagagatgaacgtt
accctgggtataccaagattaagagaaatactcatgattgcaagctctaacatcaaaacc
cctatgatgagcattcctgttctgatgaccaagaaagccttgaaacgtgttaagactttg
aggaagaagataacacgtgtgtgtttgtcagaggtgcttcacaaagtggatgtgatagaa
acttttcgcatgccagagaaaaggatccagaagtcacgagttttcaatatcacattccac
ttcctgcccccagagcgataccagcaagacaagctactcacccctgatgagattcttcat
ttcatggagcagagattcttccgcttgctgccggaggccattaagaagctgaatgctaaa
atggctgcagccaatgtggtgnngacgtgcaaagtcacagcaaataacagtagtcaagat
ggcgatgacattgcagacaaagaggatgatggcgatgaaggtacagaaaaccacaggatt
gtggatgatgaggcgaatgaaggggatgctgatgcctccgattccaagagaaaagaaaaa
caagaagaggaggtagactatgagagcgaggagggagaggcggccattgatgatgaggtg
gaggatgtggctgagaaagaggatgaggaagatactcaggaaaatacagaggaaaattct
ggtgaaagtcaattagcagacgaagcacagagtcttaacaaatctgtacagataaaggga
gcttcactggactccaataggatcagcgcagtgcttcaattgagccccacctttgaggac
tacaaatatgacaccaaacatgggctgtggtgtgagctaaccatggtcctacccctcact
aaagtgcactttgacctcacatcagtggtggtgaagcaggctcagaatgctgtcatcatg
gagaccaagggcatcacacgctgcttgttaaatgaagtcaccacaaaggagggcaaaaaa
gagatggtgctcaacacggagggcatcaacattcatgagatgttcaaacatgctgatatc
ctggagttgaaccggttatactccaatgaggttcacgctatggccaacacatacggtatt
gaggtggccatcagagtcattgagaaggagattaaagatgtgtttgctgtctatggtatt
gaggtggacccacgccatctctctctggtggctgactacatgtgttttgagggggagttc
aagcctctcaacagatttggcattcaatcaaacagttccccgcttcaacagatgaccttt
gagaccagttacaagtttttaaagcaagcaacgatgctaggttcttatgacaaactccgt
tcgccctcggcttgcttggttgtaggaaaagttgtgaaaggaggaactggcctcttcgat
ctaaaacagccgttatag
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