Puntigrus tetrazona (Sumatra barb): 122358237
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Entry
122358237 CDS
T08985
Symbol
polr1a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122358237 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122358237 (polr1a)
Enzymes [BR:
ptet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122358237 (polr1a)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122358237 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
Motif
Other DBs
NCBI-GeneID:
122358237
NCBI-ProteinID:
XP_043113961
LinkDB
All DBs
Position
14:4453744..4467881
Genome browser
AA seq
1699 aa
AA seq
DB search
MLFSKETPWRRLEGIVFGLFSADEIRKLSVKTITNSQLLDNVGNAAPNGLYDLALGPADN
KEICSTCMQDYTSCPGHFGHIDLPLPAYNPMFFDKLYLLMRGSCLACHTMKCPRSAVHLL
LGQLKLLDVGAMKEVYELESVLNQLVEGNAQLSGIEIQEAMNEFITPILKANEDKQHTSP
IKHICEKKSSLINNFWRVHMRPKKCPNCRAGRMTVRREHNSKLIVIQGLFKASTEKDDDS
LITKRGFLTPSLAREHVINLWEKEGFFLKHLFSGFDMNNSEKGFSPEVFFLELLVVPPCR
YRPINRLGDQMFTNGQTVNLQAVLKDNFMIQKLLALIAAEKTNSVEDTQTEVVQPSESAD
IGQIDQTFLSDIQGVNLTDKLYNMWIHLQSHVNIVFDSEMDKLSTEKFPGVRQLLEKKDG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPSVHPGASMVINEDGSRTILSSSNLTQREAVAKQLLTPSTXQHRIPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTLRGCFFTRDQYTALVYRGLTDKIGR
VKLLPPALFKPVPLWTGKQVVSTLLLNVIPENSIPLNLMGKAKIPGKAWVKEPPRVVPGY
XAETMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTLGVEDILVKNGANKQRRKIIQTSVTCGSKALRAAFNLPAAVGDTEARERWQ
DAHLNTDQRDFNVVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSEDFRIGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPQQFPFIKDNYEVIRKSKCLDEVLAKMDAGAALSHFKALKKWKAKHEHVSXQDG
AFLLYSQKKQSKLKSQVENKTLANGRDPSSLQLLENWRALDASGRKKYLKKTSHCPDPCL
VSLPPDICFGSVSETLESIVESYLDQMCAKQEFPISSEIIDTDRLRHLLLLKWQRSLCDP
GXAVGLLAAQSIGRTIHTNDLNTFHFAGRGEMNVTLHIQRLREILMIASSNIKXPMMSIP
VLMTKKALKRVKTLRKKITRVCLSEVLHKVDVIETFRMPEKRIQKSRVFNITFHFLPPER
YQQDKLLTPDEILHFMEQRFFRLLPEAIKKLNAKMAAANVVDTCKVTANNSSQDGDDIAD
KEDDGDEGTENHRIVDDEANEGDADASDSKRKEKQEEEVDYESERGEAAIDDEVEDVAEK
EDEEDTQENTEENSGESQLADEAQSLNKSVQIKGASLDSNRISARLQLSPTFEDYKYDTK
HGLWCELTMVLPLTKVHFDLTSVVVKQAQNAVIMETKGITRCLLNEVTTKEGXKEMVLNT
EGINIHEMFKHADILELNRLYSNEVHAMANTYGIEVAIRVIEKEIKDVFAVYGIEVDPRH
LSLVADYMCFEGEFKPLNRFGIQSNSSPLQQMTFETSYKFLKQATMLGSYDKLRSPSACL
VVGKVVKGGTGLFDLKQPL
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcaaaagaaacgccatggaggcgattagaaggaatagtgtttggcttgttc
tccgccgatgaaataaggaagctgagtgtgaaaactatcactaattcccagctgttggat
aatgtgggcaatgccgctccaaacgggctgtatgacctggcgctgggtccagctgataac
aaggagatctgctccacctgtatgcaggactacaccagctgtcctggccactttggtcac
atagatctgccccttcctgcctacaacccaatgttttttgataaattatatctgctcatg
cgaggttcatgccttgcatgccatacgatgaagtgtccgagatcggctgttcatttactg
ctgggccagctgaagctccttgatgtgggtgccatgaaggaggtgtatgagcttgagagc
gttctcaatcagttggtggagggcaatgctcagctgtctggaatagaaatccaagaagct
atgaatgagtttattacacccatcctaaaagccaatgaagacaagcagcacacttctcct
atcaaacatatctgtgagaaaaagtccagtctcattaacaatttctggagagtacacatg
agaccaaagaagtgtccaaattgcagagctggtagaatgactgtgcgcagggaacacaac
agcaaactcattgtcatacaaggattattcaaagcaagcacagaaaaggatgatgattct
ctgattaccaaacgtggattcttgactccaagtttggcacgagaacatgtcatcaacctc
tgggagaaggaaggtttcttcctgaagcatctgttttcaggatttgacatgaataattca
gagaaaggcttcagtcctgaagttttctttttggagttgcttgtggttcctccatgcagg
tacaggcctattaatcgtttgggagaccagatgttcaccaacggacagaccgtgaacctg
caggccgtgttaaaggataacttcatgattcagaaactactcgcactcatcgctgctgag
aaaaccaacagcgttgaagacacacagacagaggtggtgcagcccagtgaatccgcagat
attggtcagatagatcagaccttcttatcggacatccaaggagtgaatctaacagacaag
ctctataacatgtggatccacctgcagagtcacgtcaacattgtgtttgacagcgaaatg
gacaaactgagtactgagaagttcccaggagtccgtcagctcttggagaagaaagatggc
ttgttcaggaagcatatgatgggaaagcgtgtggattatgctgcgcgctctgtcatttgt
cctgatatgtacatcggaaccaatgaaattggaataccaatggtctttgctaccaagtta
acgtacccacagccagtgacaccctggaacgtgaaggaactcaggcaggcggtgctgaat
ggacccagtgtccaccctggagcctccatggtcattaatgaagatgggtcccggaccatc
ctgagcagcagcaacctgacccagagagaagccgtggccaaacagctgctgacgcccagc
accngccagcacaggatacccatgaagattgtcaatcgccacatcaagaatggggatgtg
ctgctattaaaccgtcagcccactctccacagaccatcgattcaggcccactgtgctcgc
attctgcctggagagaaagtgctccgattacattatgccaactgtaaggcctacaacgct
gactttgatggtgacgagatgaacgctcacttccctcagagtgagctaggcagggctgag
gcctacacactagtgagcacagaccagcagtacttggtgcctaaagatgggaagccattg
gccggcctgattcaggaccacatggtatctggcaccagcatgactctccgtggctgtttt
tttacacgggatcagtacactgcactagtctacagaggcctaacagacaagatcggcaga
gtgaagctcttgcctcctgcgctctttaaacctgtgcctctctggacaggaaagcaggtg
gtgtcgacccttttgctgaatgtaattccagaaaatagcatccctttaaatttgatgggc
aaagcaaagattccaggtaaagcctgggtgaaagaacctcccagagttgttccaggatac
naggccgaaactatgtgtgaatctcaggtggtcattcgtcagggagagctcttgatgggg
gttctggataaagctcactacggcagctcagcgtacggtttggtccactgctgctacgag
ctgtacggaggagagaccagcggcaaactgctcagctgtctggcacgactcttcactgcc
tacctgcagctttaccgtggtttcaccttaggtgtggaagacattctagtaaaaaatggg
gccaacaaacagaggaggaaaattatccaaacgtcagtcacgtgtggctccaaggcactc
cgagctgcgtttaacctccctgcagctgtgggagacactgaagccagagaacgctggcaa
gatgctcatctgaacacagaccagagagatttcaacgtggtggacctgaagtttaaagag
gaggtcaatcaagtgaacaacaacatcaacaaggtgtgcatgccgctaggtctccaccgt
tccttcccagaaaacaacctacagctgatggtgcagtcaggagccaagggttcaactgtc
aatactatgcagatctcctgtttattgggtcagattgagctggagggccgccgaccgcct
ctgatgccttctgggaagtcccttccctgctttcagccctatgaacctcagccacgatcc
gaggatttcagaatcggcagattcttgacgggaatcaagcctcctgagttcttttttcat
tgtatggctggtcgcgaaggtcttgtggacactgctgtcaaaaccagtcgatctggttat
ttgcagaggtgtgtgatcaagcatctagaaggtctggtggtccagtatgatttgactgtc
cgagacagtgatggaagtgtggtccaatttctttatggagaggatgggctagacatcccc
aagacccagttcctgcagccgcagcagttccccttcatcaaagacaactacgaggttatc
agaaagtcaaagtgtctggatgaagttctggctaaaatggatgcaggggcagcacttagt
cactttaaggctctcaagaaatggaaagccaaacatgagcatgtttcanctcaggatggt
gccttcctgctctactcacagaagaaacagagcaagctgaagtctcaagtagaaaacaag
acactggccaatgggagagatccctcttctctacagcttttggagaactggagagctctg
gacgcctctggccgaaagaagtatttaaagaagacgtctcattgtccagacccgtgtctg
gtttctttaccgccagacatctgcttcggttcagtgtctgagacgcttgaatccattgtt
gagtcctacctggatcagatgtgcgccaagcaggaatttccgatctcctctgaaatcatt
gacacagatagattgaggcatctcctactgctgaagtggcagcgctctctgtgtgacccc
gggnaggccgtgggtctcctagcagctcagagcattggcagaaccatccacacaaatgac
ctcaacaccttccactttgctggcagaggagagatgaacgttaccctgcatatacaaaga
ttaagagaaatactcatgattgcaagctctaacatcaaanaccctatgatgagcattcct
gttctgatgaccaagaaagccttgaaacgtgttaagactttgaggaagaagataacacgt
gtgtgtttgtcagaggtgcttcacaaagtggatgtgatagaaacttttcgcatgccagag
aaaaggatccagaagtcacgagttttcaatatcacattccacttcctgcccccagagcga
taccagcaagacaagctactcacccctgatgagattcttcatttcatggagcagagattc
ttccgcttgctgccggaggccattaagaagctgaatgctaaaatggctgcagccaatgtg
gtggacacgtgcaaagtcacagcaaataacagtagtcaagatggcgatgacattgcagac
aaagaggatgatggcgatgaaggtacagaaaaccacaggattgtggatgatgaggcgaat
gaaggggatgctgatgcctccgattccaagagaaaagaaaaacaagaagaggaggtagac
tatgagagcgagagaggagaggcggccattgatgatgaggtggaggatgtggctgagaaa
gaggatgaggaagatactcaggaaaatacagaggaaaattctggtgaaagtcaattagca
gacgaagcacagagtcttaacaaatctgtacagataaagggagcttcactggactccaat
aggatcagcgccaggcttcaattgagccccacctttgaggactacaaatatgacaccaaa
catgggctgtggtgtgagctaaccatggtcctacccctcactaaagtgcactttgacctc
acatcggtggtggtgaagcaggctcagaatgctgtcatcatggagaccaagggcatcaca
cgctgcttgttaaatgaagtcaccacaaaggagggcnaaaaagagatggtgctcaacacg
gagggcatcaacattcatgagatgttcaaacatgctgatatcctggagttgaaccggtta
tactccaatgaggttcacgctatggccaacacatacggtattgaggtggccatcagagtc
attgagaaggagattaaagatgtgtttgctgtctatggtattgaggtggacccacgccat
ctctctctagtggctgactacatgtgttttgagggggagttcaagcctctcaacagattt
ggcattcaatcaaacagttccccgcttcaacagatgacctttgagaccagttacaagttt
ttaaagcaagcaacgatgctaggttcttatgacaaactccgttcgccctcggcttgcttg
gttgtaggaaaagttgtgaaaggaggaactggcctcttcgatctaaaacagccgttatag
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integrated database retrieval system
